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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs2736100

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr5:1286401 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
C>A
Variation Type
SNV Single Nucleotide Variation
Frequency
A=0.493547 (134230/271970, ALFA)
C=0.471707 (124856/264690, TOPMED)
C=0.477917 (66852/139882, GnomAD) (+ 21 more)
C=0.45039 (35440/78688, PAGE_STUDY)
C=0.39503 (11162/28256, 14KJPN)
C=0.39629 (6641/16758, 8.3KJPN)
C=0.4849 (3105/6404, 1000G_30x)
C=0.4846 (2427/5008, 1000G)
C=0.4547 (2037/4480, Estonian)
A=0.4883 (1882/3854, ALSPAC)
A=0.4811 (1784/3708, TWINSUK)
C=0.3816 (1118/2930, KOREAN)
A=0.4770 (994/2084, HGDP_Stanford)
C=0.4906 (836/1704, HapMap)
A=0.479 (478/998, GoNL)
C=0.444 (352/792, PRJEB37584)
C=0.369 (231/626, Chileans)
C=0.452 (271/600, NorthernSweden)
C=0.298 (108/362, SGDP_PRJ)
A=0.356 (77/216, Qatari)
C=0.467 (99/212, Vietnamese)
C=0.33 (30/90, Ancient Sardinia)
A=0.42 (17/40, GENOME_DK)
C=0.38 (15/40, Siberian)
Clinical Significance
Reported in ClinVar
Gene : Consequence
TERT : Intron Variant
Publications
246 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 277100 C=0.506157 A=0.493843 0.259531 0.247218 0.493252 14
European Sub 240198 C=0.509655 A=0.490345 0.262067 0.242758 0.495175 6
African Sub 12032 C=0.46476 A=0.53524 0.216423 0.286902 0.496676 0
African Others Sub 416 C=0.483 A=0.517 0.240385 0.274038 0.485577 0
African American Sub 11616 C=0.46410 A=0.53590 0.215565 0.287362 0.497073 0
Asian Sub 828 C=0.421 A=0.579 0.181159 0.338164 0.480676 0
East Asian Sub 650 C=0.405 A=0.595 0.166154 0.356923 0.476923 0
Other Asian Sub 178 C=0.483 A=0.517 0.235955 0.269663 0.494382 0
Latin American 1 Sub 930 C=0.422 A=0.578 0.180645 0.337634 0.48172 0
Latin American 2 Sub 4964 C=0.3817 A=0.6183 0.149073 0.385576 0.465351 0
South Asian Sub 5056 C=0.6064 A=0.3936 0.377769 0.164953 0.457278 3
Other Sub 13092 C=0.49985 A=0.50015 0.259395 0.259701 0.480904 6


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
Allele Frequency Aggregator Total Global 271970 C=0.506453 A=0.493547
Allele Frequency Aggregator European Sub 237028 C=0.509750 A=0.490250
Allele Frequency Aggregator Other Sub 12274 C=0.50024 A=0.49976
Allele Frequency Aggregator African Sub 10890 C=0.46584 A=0.53416
Allele Frequency Aggregator South Asian Sub 5056 C=0.6064 A=0.3936
Allele Frequency Aggregator Latin American 2 Sub 4964 C=0.3817 A=0.6183
Allele Frequency Aggregator Latin American 1 Sub 930 C=0.422 A=0.578
Allele Frequency Aggregator Asian Sub 828 C=0.421 A=0.579
TopMed Global Study-wide 264690 C=0.471707 A=0.528293
gnomAD - Genomes Global Study-wide 139882 C=0.477917 A=0.522083
gnomAD - Genomes European Sub 75750 C=0.49966 A=0.50034
gnomAD - Genomes African Sub 41902 C=0.46174 A=0.53826
gnomAD - Genomes American Sub 13636 C=0.40136 A=0.59864
gnomAD - Genomes Ashkenazi Jewish Sub 3324 C=0.5560 A=0.4440
gnomAD - Genomes East Asian Sub 3126 C=0.4127 A=0.5873
gnomAD - Genomes Other Sub 2144 C=0.4869 A=0.5131
The PAGE Study Global Study-wide 78688 C=0.45039 A=0.54961
The PAGE Study AfricanAmerican Sub 32510 C=0.46324 A=0.53676
The PAGE Study Mexican Sub 10810 C=0.37650 A=0.62350
The PAGE Study Asian Sub 8312 C=0.3982 A=0.6018
The PAGE Study PuertoRican Sub 7916 C=0.4773 A=0.5227
The PAGE Study NativeHawaiian Sub 4534 C=0.5801 A=0.4199
The PAGE Study Cuban Sub 4230 C=0.5031 A=0.4969
The PAGE Study Dominican Sub 3828 C=0.4598 A=0.5402
The PAGE Study CentralAmerican Sub 2450 C=0.3751 A=0.6249
The PAGE Study SouthAmerican Sub 1982 C=0.3658 A=0.6342
The PAGE Study NativeAmerican Sub 1260 C=0.4429 A=0.5571
The PAGE Study SouthAsian Sub 856 C=0.586 A=0.414
14KJPN JAPANESE Study-wide 28256 C=0.39503 A=0.60497
8.3KJPN JAPANESE Study-wide 16758 C=0.39629 A=0.60371
1000Genomes_30x Global Study-wide 6404 C=0.4849 A=0.5151
1000Genomes_30x African Sub 1786 C=0.4658 A=0.5342
1000Genomes_30x Europe Sub 1266 C=0.5055 A=0.4945
1000Genomes_30x South Asian Sub 1202 C=0.6065 A=0.3935
1000Genomes_30x East Asian Sub 1170 C=0.4197 A=0.5803
1000Genomes_30x American Sub 980 C=0.421 A=0.579
1000Genomes Global Study-wide 5008 C=0.4846 A=0.5154
1000Genomes African Sub 1322 C=0.4675 A=0.5325
1000Genomes East Asian Sub 1008 C=0.4147 A=0.5853
1000Genomes Europe Sub 1006 C=0.4990 A=0.5010
1000Genomes South Asian Sub 978 C=0.605 A=0.395
1000Genomes American Sub 694 C=0.428 A=0.572
Genetic variation in the Estonian population Estonian Study-wide 4480 C=0.4547 A=0.5453
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 C=0.5117 A=0.4883
UK 10K study - Twins TWIN COHORT Study-wide 3708 C=0.5189 A=0.4811
KOREAN population from KRGDB KOREAN Study-wide 2930 C=0.3816 A=0.6184
HGDP-CEPH-db Supplement 1 Global Study-wide 2084 C=0.5230 A=0.4770
HGDP-CEPH-db Supplement 1 Est_Asia Sub 470 C=0.451 A=0.549
HGDP-CEPH-db Supplement 1 Central_South_Asia Sub 414 C=0.570 A=0.430
HGDP-CEPH-db Supplement 1 Middle_Est Sub 350 C=0.660 A=0.340
HGDP-CEPH-db Supplement 1 Europe Sub 320 C=0.553 A=0.447
HGDP-CEPH-db Supplement 1 Africa Sub 242 C=0.525 A=0.475
HGDP-CEPH-db Supplement 1 America Sub 216 C=0.185 A=0.815
HGDP-CEPH-db Supplement 1 Oceania Sub 72 C=0.93 A=0.07
HapMap Global Study-wide 1704 C=0.4906 A=0.5094
HapMap African Sub 684 C=0.477 A=0.523
HapMap American Sub 596 C=0.534 A=0.466
HapMap Asian Sub 248 C=0.395 A=0.605
HapMap Europe Sub 176 C=0.534 A=0.466
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 C=0.521 A=0.479
CNV burdens in cranial meningiomas Global Study-wide 792 C=0.444 A=0.556
CNV burdens in cranial meningiomas CRM Sub 792 C=0.444 A=0.556
Chileans Chilean Study-wide 626 C=0.369 A=0.631
Northern Sweden ACPOP Study-wide 600 C=0.452 A=0.548
SGDP_PRJ Global Study-wide 362 C=0.298 A=0.702
Qatari Global Study-wide 216 C=0.644 A=0.356
A Vietnamese Genetic Variation Database Global Study-wide 212 C=0.467 A=0.533
Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 90 C=0.33 A=0.67
The Danish reference pan genome Danish Study-wide 40 C=0.57 A=0.42
Siberian Global Study-wide 40 C=0.38 A=0.62
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 5 NC_000005.10:g.1286401C>A
GRCh37.p13 chr 5 NC_000005.9:g.1286516C>A
TERT RefSeqGene (LRG_343) NG_009265.1:g.13647G>T
LOC110806264 genomic region NG_055468.1:g.28C>A
Gene: TERT, telomerase reverse transcriptase (minus strand)
Molecule type Change Amino acid[Codon] SO Term
TERT transcript variant 2 NM_001193376.3:c.1574-377…

NM_001193376.3:c.1574-3777G>T

N/A Intron Variant
TERT transcript variant 1 NM_198253.3:c.1574-3777G>T N/A Intron Variant
TERT transcript variant 3 NR_149162.3:n. N/A Intron Variant
TERT transcript variant 4 NR_149163.3:n. N/A Intron Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Allele: A (allele ID: 362289 )
ClinVar Accession Disease Names Clinical Significance
RCV000497563.2 Chronic osteomyelitis Association
RCV001523672.4 Dyskeratosis congenita, autosomal dominant 2,Idiopathic Pulmonary Fibrosis Benign
RCV001788211.1 Idiopathic Pulmonary Fibrosis Association
RCV001788212.1 Chronic obstructive pulmonary disease Uncertain-Significance
RCV001788213.1 Combined pulmonary fibrosis-emphysema syndrome Association
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement C= A
GRCh38.p14 chr 5 NC_000005.10:g.1286401= NC_000005.10:g.1286401C>A
GRCh37.p13 chr 5 NC_000005.9:g.1286516= NC_000005.9:g.1286516C>A
TERT RefSeqGene (LRG_343) NG_009265.1:g.13647= NG_009265.1:g.13647G>T
LOC110806264 genomic region NG_055468.1:g.28= NG_055468.1:g.28C>A
TERT transcript variant 2 NM_001193376.1:c.1574-3777= NM_001193376.1:c.1574-3777G>T
TERT transcript variant 2 NM_001193376.3:c.1574-3777= NM_001193376.3:c.1574-3777G>T
TERT transcript variant 1 NM_198253.2:c.1574-3777= NM_198253.2:c.1574-3777G>T
TERT transcript variant 1 NM_198253.3:c.1574-3777= NM_198253.3:c.1574-3777G>T
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

149 SubSNP, 24 Frequency, 5 ClinVar submissions
No Submitter Submission ID Date (Build)
1 SC_JCM ss3862475 Sep 28, 2001 (100)
2 SSAHASNP ss22256843 Apr 05, 2004 (121)
3 ABI ss44632215 Mar 13, 2006 (126)
4 EGP_SNPS ss49784115 Mar 13, 2006 (126)
5 ILLUMINA ss66679267 Nov 30, 2006 (127)
6 ILLUMINA ss67270819 Nov 30, 2006 (127)
7 ILLUMINA ss67671414 Nov 30, 2006 (127)
8 PERLEGEN ss68923805 May 17, 2007 (127)
9 ILLUMINA ss70749274 May 25, 2008 (130)
10 ILLUMINA ss71321429 May 17, 2007 (127)
11 ILLUMINA ss75568511 Dec 07, 2007 (129)
12 AFFY ss76547446 Dec 07, 2007 (129)
13 HGSV ss78706660 Dec 07, 2007 (129)
14 ILLUMINA ss79145397 Dec 15, 2007 (130)
15 KRIBB_YJKIM ss80734069 Dec 15, 2007 (130)
16 KRIBB_YJKIM ss84074980 Dec 15, 2007 (130)
17 HGSV ss86082464 Dec 15, 2007 (130)
18 HUMANGENOME_JCVI ss98589293 Feb 05, 2009 (130)
19 BGI ss104160048 Dec 01, 2009 (131)
20 1000GENOMES ss108733073 Jan 23, 2009 (130)
21 1000GENOMES ss111293136 Jan 25, 2009 (130)
22 ILLUMINA-UK ss116428639 Feb 14, 2009 (130)
23 ILLUMINA ss122096122 Dec 01, 2009 (131)
24 ENSEMBL ss143869993 Dec 01, 2009 (131)
25 ILLUMINA ss154231468 Dec 01, 2009 (131)
26 GMI ss154911351 Dec 01, 2009 (131)
27 ILLUMINA ss159407968 Dec 01, 2009 (131)
28 ILLUMINA ss160574818 Dec 01, 2009 (131)
29 COMPLETE_GENOMICS ss164027102 Jul 04, 2010 (132)
30 ILLUMINA ss171362387 Jul 04, 2010 (132)
31 ILLUMINA ss173448224 Jul 04, 2010 (132)
32 BUSHMAN ss199766850 Jul 04, 2010 (132)
33 BCM-HGSC-SUB ss207061662 Jul 04, 2010 (132)
34 ILLUMINA ss209088633 Jul 04, 2010 (132)
35 1000GENOMES ss221466746 Jul 14, 2010 (132)
36 1000GENOMES ss232792216 Jul 14, 2010 (132)
37 1000GENOMES ss239996964 Jul 15, 2010 (132)
38 ILLUMINA ss244291719 Jul 04, 2010 (132)
39 BL ss253148781 May 09, 2011 (134)
40 GMI ss278133460 May 04, 2012 (137)
41 GMI ss285102859 Apr 25, 2013 (138)
42 PJP ss293340545 May 09, 2011 (134)
43 ILLUMINA ss410925450 Sep 17, 2011 (135)
44 PAGE_STUDY ss469414447 May 04, 2012 (137)
45 PAGE_STUDY ss469415344 May 04, 2012 (137)
46 ILLUMINA ss480650792 May 04, 2012 (137)
47 ILLUMINA ss480666143 May 04, 2012 (137)
48 ILLUMINA ss481513389 Sep 08, 2015 (146)
49 ILLUMINA ss485120302 May 04, 2012 (137)
50 EXOME_CHIP ss491364061 May 04, 2012 (137)
51 ILLUMINA ss537121950 Sep 08, 2015 (146)
52 TISHKOFF ss558146376 Apr 25, 2013 (138)
53 SSMP ss651990147 Apr 25, 2013 (138)
54 ILLUMINA ss778504966 Sep 08, 2015 (146)
55 ILLUMINA ss783006503 Sep 08, 2015 (146)
56 ILLUMINA ss783966866 Sep 08, 2015 (146)
57 ILLUMINA ss825475915 Apr 01, 2015 (144)
58 ILLUMINA ss832263762 Sep 08, 2015 (146)
59 ILLUMINA ss832919658 Jul 13, 2019 (153)
60 ILLUMINA ss833961141 Sep 08, 2015 (146)
61 EVA-GONL ss981163826 Aug 21, 2014 (142)
62 JMKIDD_LAB ss1072325218 Aug 21, 2014 (142)
63 1000GENOMES ss1313599708 Aug 21, 2014 (142)
64 DDI ss1430216428 Apr 01, 2015 (144)
65 EVA_GENOME_DK ss1580975912 Apr 01, 2015 (144)
66 EVA_DECODE ss1590679925 Apr 01, 2015 (144)
67 EVA_UK10K_ALSPAC ss1612108653 Apr 01, 2015 (144)
68 EVA_UK10K_TWINSUK ss1655102686 Apr 01, 2015 (144)
69 EVA_SVP ss1712736875 Apr 01, 2015 (144)
70 ILLUMINA ss1752547693 Sep 08, 2015 (146)
71 HAMMER_LAB ss1802921028 Sep 08, 2015 (146)
72 WEILL_CORNELL_DGM ss1924419830 Feb 12, 2016 (147)
73 ILLUMINA ss1946136648 Feb 12, 2016 (147)
74 ILLUMINA ss1958759503 Feb 12, 2016 (147)
75 GENOMED ss1969991105 Jul 19, 2016 (147)
76 JJLAB ss2022803407 Sep 14, 2016 (149)
77 ILLUMINA ss2094817572 Dec 20, 2016 (150)
78 ILLUMINA ss2095152780 Dec 20, 2016 (150)
79 USC_VALOUEV ss2150953358 Dec 20, 2016 (150)
80 HUMAN_LONGEVITY ss2270758029 Dec 20, 2016 (150)
81 SYSTEMSBIOZJU ss2625900217 Nov 08, 2017 (151)
82 ILLUMINA ss2634233960 Nov 08, 2017 (151)
83 ILLUMINA ss2634233961 Nov 08, 2017 (151)
84 ILLUMINA ss2635140320 Nov 08, 2017 (151)
85 GRF ss2706474475 Nov 08, 2017 (151)
86 ILLUMINA ss2711026284 Nov 08, 2017 (151)
87 GNOMAD ss2820318762 Nov 08, 2017 (151)
88 AFFY ss2985313705 Nov 08, 2017 (151)
89 AFFY ss2985941591 Nov 08, 2017 (151)
90 SWEGEN ss2996313816 Nov 08, 2017 (151)
91 ILLUMINA ss3022458621 Nov 08, 2017 (151)
92 BIOINF_KMB_FNS_UNIBA ss3025184456 Nov 08, 2017 (151)
93 CSHL ss3346200075 Nov 08, 2017 (151)
94 ILLUMINA ss3625864436 Oct 12, 2018 (152)
95 ILLUMINA ss3629159227 Oct 12, 2018 (152)
96 ILLUMINA ss3632163390 Oct 12, 2018 (152)
97 ILLUMINA ss3634082311 Oct 12, 2018 (152)
98 ILLUMINA ss3634987389 Oct 12, 2018 (152)
99 ILLUMINA ss3635764615 Oct 12, 2018 (152)
100 ILLUMINA ss3636696061 Oct 12, 2018 (152)
101 ILLUMINA ss3637517211 Oct 12, 2018 (152)
102 ILLUMINA ss3638533760 Oct 12, 2018 (152)
103 ILLUMINA ss3639269314 Oct 12, 2018 (152)
104 ILLUMINA ss3639657346 Oct 12, 2018 (152)
105 ILLUMINA ss3640694682 Oct 12, 2018 (152)
106 ILLUMINA ss3643481301 Oct 12, 2018 (152)
107 ILLUMINA ss3644869520 Oct 12, 2018 (152)
108 URBANLAB ss3647965323 Oct 12, 2018 (152)
109 ILLUMINA ss3652950965 Oct 12, 2018 (152)
110 ILLUMINA ss3654086335 Oct 12, 2018 (152)
111 EGCUT_WGS ss3664202735 Jul 13, 2019 (153)
112 EVA_DECODE ss3713952113 Jul 13, 2019 (153)
113 ILLUMINA ss3726206569 Jul 13, 2019 (153)
114 ACPOP ss3732016561 Jul 13, 2019 (153)
115 ILLUMINA ss3744247613 Jul 13, 2019 (153)
116 ILLUMINA ss3744532999 Jul 13, 2019 (153)
117 ILLUMINA ss3745287563 Jul 13, 2019 (153)
118 EVA ss3762965689 Jul 13, 2019 (153)
119 PAGE_CC ss3771181106 Jul 13, 2019 (153)
120 ILLUMINA ss3772781943 Jul 13, 2019 (153)
121 KHV_HUMAN_GENOMES ss3806135060 Jul 13, 2019 (153)
122 EVA ss3829051937 Apr 26, 2020 (154)
123 EVA ss3837985427 Apr 26, 2020 (154)
124 EVA ss3843427866 Apr 26, 2020 (154)
125 HGDP ss3847778353 Apr 26, 2020 (154)
126 SGDP_PRJ ss3861041135 Apr 26, 2020 (154)
127 KRGDB ss3907477928 Apr 26, 2020 (154)
128 EVA ss3984541527 Apr 26, 2021 (155)
129 EVA ss3985119504 Apr 26, 2021 (155)
130 EVA ss4017188633 Apr 26, 2021 (155)
131 TOPMED ss4647124428 Apr 26, 2021 (155)
132 TOMMO_GENOMICS ss5170043381 Apr 26, 2021 (155)
133 1000G_HIGH_COVERAGE ss5262607335 Oct 13, 2022 (156)
134 EVA ss5315024752 Oct 13, 2022 (156)
135 EVA ss5355156619 Oct 13, 2022 (156)
136 HUGCELL_USP ss5460980391 Oct 13, 2022 (156)
137 EVA ss5507890474 Oct 13, 2022 (156)
138 1000G_HIGH_COVERAGE ss5545525029 Oct 13, 2022 (156)
139 SANFORD_IMAGENETICS ss5624579652 Oct 13, 2022 (156)
140 SANFORD_IMAGENETICS ss5637024992 Oct 13, 2022 (156)
141 TOMMO_GENOMICS ss5705622623 Oct 13, 2022 (156)
142 EVA ss5799638471 Oct 13, 2022 (156)
143 YY_MCH ss5805951055 Oct 13, 2022 (156)
144 EVA ss5834408606 Oct 13, 2022 (156)
145 EVA ss5847259624 Oct 13, 2022 (156)
146 EVA ss5854644984 Oct 13, 2022 (156)
147 EVA ss5892681248 Oct 13, 2022 (156)
148 EVA ss5965432456 Oct 13, 2022 (156)
149 EVA ss5979728587 Oct 13, 2022 (156)
150 1000Genomes NC_000005.9 - 1286516 Oct 12, 2018 (152)
151 1000Genomes_30x NC_000005.10 - 1286401 Oct 13, 2022 (156)
152 The Avon Longitudinal Study of Parents and Children NC_000005.9 - 1286516 Oct 12, 2018 (152)
153 Chileans NC_000005.9 - 1286516 Apr 26, 2020 (154)
154 Genetic variation in the Estonian population NC_000005.9 - 1286516 Oct 12, 2018 (152)
155 The Danish reference pan genome NC_000005.9 - 1286516 Apr 26, 2020 (154)
156 gnomAD - Genomes NC_000005.10 - 1286401 Apr 26, 2021 (155)
157 Genome of the Netherlands Release 5 NC_000005.9 - 1286516 Apr 26, 2020 (154)
158 HGDP-CEPH-db Supplement 1 NC_000005.8 - 1339516 Apr 26, 2020 (154)
159 HapMap NC_000005.10 - 1286401 Apr 26, 2020 (154)
160 KOREAN population from KRGDB NC_000005.9 - 1286516 Apr 26, 2020 (154)
161 Northern Sweden NC_000005.9 - 1286516 Jul 13, 2019 (153)
162 The PAGE Study NC_000005.10 - 1286401 Jul 13, 2019 (153)
163 Ancient Sardinia genome-wide 1240k capture data generation and analysis NC_000005.9 - 1286516 Apr 26, 2021 (155)
164 CNV burdens in cranial meningiomas NC_000005.9 - 1286516 Apr 26, 2021 (155)
165 Qatari NC_000005.9 - 1286516 Apr 26, 2020 (154)
166 SGDP_PRJ NC_000005.9 - 1286516 Apr 26, 2020 (154)
167 Siberian NC_000005.9 - 1286516 Apr 26, 2020 (154)
168 8.3KJPN NC_000005.9 - 1286516 Apr 26, 2021 (155)
169 14KJPN NC_000005.10 - 1286401 Oct 13, 2022 (156)
170 TopMed NC_000005.10 - 1286401 Apr 26, 2021 (155)
171 UK 10K study - Twins NC_000005.9 - 1286516 Oct 12, 2018 (152)
172 A Vietnamese Genetic Variation Database NC_000005.9 - 1286516 Jul 13, 2019 (153)
173 ALFA NC_000005.10 - 1286401 Apr 26, 2021 (155)
174 ClinVar RCV000497563.2 Oct 13, 2022 (156)
175 ClinVar RCV001523672.4 Oct 13, 2022 (156)
176 ClinVar RCV001788211.1 Oct 13, 2022 (156)
177 ClinVar RCV001788212.1 Oct 13, 2022 (156)
178 ClinVar RCV001788213.1 Oct 13, 2022 (156)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs59399762 May 25, 2008 (130)
rs386572964 Aug 21, 2014 (142)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
456245, ss76547446, ss78706660, ss86082464, ss108733073, ss111293136, ss116428639, ss164027102, ss199766850, ss207061662, ss253148781, ss278133460, ss285102859, ss293340545, ss480650792, ss825475915, ss1590679925, ss1712736875, ss2635140320, ss3639269314, ss3639657346, ss3643481301, ss3847778353 NC_000005.8:1339515:C:A NC_000005.10:1286400:C:A (self)
25143998, 13984083, 336702, 9940983, 7140851, 6207379, 14655322, 5301426, 345431, 90891, 6461760, 13058115, 3469712, 28012688, 13984083, 3100401, ss221466746, ss232792216, ss239996964, ss480666143, ss481513389, ss485120302, ss491364061, ss537121950, ss558146376, ss651990147, ss778504966, ss783006503, ss783966866, ss832263762, ss832919658, ss833961141, ss981163826, ss1072325218, ss1313599708, ss1430216428, ss1580975912, ss1612108653, ss1655102686, ss1752547693, ss1802921028, ss1924419830, ss1946136648, ss1958759503, ss1969991105, ss2022803407, ss2094817572, ss2095152780, ss2150953358, ss2625900217, ss2634233960, ss2634233961, ss2706474475, ss2711026284, ss2820318762, ss2985313705, ss2985941591, ss2996313816, ss3022458621, ss3346200075, ss3625864436, ss3629159227, ss3632163390, ss3634082311, ss3634987389, ss3635764615, ss3636696061, ss3637517211, ss3638533760, ss3640694682, ss3644869520, ss3652950965, ss3654086335, ss3664202735, ss3732016561, ss3744247613, ss3744532999, ss3745287563, ss3762965689, ss3772781943, ss3829051937, ss3837985427, ss3861041135, ss3907477928, ss3984541527, ss3985119504, ss4017188633, ss5170043381, ss5315024752, ss5355156619, ss5507890474, ss5624579652, ss5637024992, ss5799638471, ss5834408606, ss5847259624, ss5965432456, ss5979728587 NC_000005.9:1286515:C:A NC_000005.10:1286400:C:A (self)
RCV000497563.2, RCV001523672.4, RCV001788211.1, RCV001788212.1, RCV001788213.1, 33050964, 177825216, 2789937, 402575, 39459727, 484501985, 2023365766, ss2270758029, ss3025184456, ss3647965323, ss3713952113, ss3726206569, ss3771181106, ss3806135060, ss3843427866, ss4647124428, ss5262607335, ss5460980391, ss5545525029, ss5705622623, ss5805951055, ss5854644984, ss5892681248 NC_000005.10:1286400:C:A NC_000005.10:1286400:C:A (self)
ss3862475, ss44632215, ss49784115, ss66679267, ss67270819, ss67671414, ss68923805, ss70749274, ss71321429, ss75568511, ss79145397, ss80734069, ss84074980, ss98589293, ss104160048, ss122096122, ss143869993, ss154231468, ss154911351, ss159407968, ss160574818, ss171362387, ss173448224, ss209088633, ss244291719, ss410925450, ss469414447, ss469415344 NT_006576.16:1276515:C:A NC_000005.10:1286400:C:A (self)
ss22256843 NT_023089.13:1269253:C:A NC_000005.10:1286400:C:A (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

246 citations for rs2736100
PMID Title Author Year Journal
18835860 A genome-wide association study identifies an association of a common variant in TERT with susceptibility to idiopathic pulmonary fibrosis. Mushiroda T et al. 2008 Journal of medical genetics
18978790 Lung cancer susceptibility locus at 5p15.33. McKay JD et al. 2008 Nature genetics
19369581 Common genetic variants on 5p15.33 contribute to risk of lung adenocarcinoma in a Chinese population. Jin G et al. 2009 Carcinogenesis
19578366 Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility. Wrensch M et al. 2009 Nature genetics
19578367 Genome-wide association study identifies five susceptibility loci for glioma. Shete S et al. 2009 Nature genetics
19654303 Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study. Broderick P et al. 2009 Cancer research
19836008 A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma. Landi MT et al. 2009 American journal of human genetics
19903803 Re: Discriminatory accuracy from single-nucleotide polymorphisms in models to predict breast cancer risk. Spitz MR et al. 2009 Journal of the National Cancer Institute
19955392 Role of 5p15.33 (TERT-CLPTM1L), 6p21.33 and 15q25.1 (CHRNA5-CHRNA3) variation and lung cancer risk in never-smokers. Wang Y et al. 2010 Carcinogenesis
20022891 The evolving discipline of molecular epidemiology of cancer. Spitz MR et al. 2010 Carcinogenesis
20056641 Multiple genetic variants in telomere pathway genes and breast cancer risk. Shen J et al. 2010 Cancer epidemiology, biomarkers & prevention
20056643 A rigorous and comprehensive validation: common genetic variations and lung cancer. Yang P et al. 2010 Cancer epidemiology, biomarkers & prevention
20061363 Individuals susceptible to lung adenocarcinoma defined by combined HLA-DQA1 and TERT genotypes. Kohno T et al. 2010 Carcinogenesis
20142248 Cumulative effect of multiple loci on genetic susceptibility to familial lung cancer. Liu P et al. 2010 Cancer epidemiology, biomarkers & prevention
20211558 Genetic advances in glioma: susceptibility genes and networks. Liu Y et al. 2010 Current opinion in genetics & development
20212223 New insights into susceptibility to glioma. Liu Y et al. 2010 Archives of neurology
20368557 Polymorphisms of LIG4, BTBD2, HMGA2, and RTEL1 genes involved in the double-strand break repair pathway predict glioblastoma survival. Liu Y et al. 2010 Journal of clinical oncology
20462933 Interaction between 5 genetic variants and allergy in glioma risk. Schoemaker MJ et al. 2010 American journal of epidemiology
20505153 A compendium of genome-wide associations for cancer: critical synopsis and reappraisal. Ioannidis JP et al. 2010 Journal of the National Cancer Institute
20543847 Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer. Turnbull C et al. 2010 Nature genetics
20548021 Replication of lung cancer susceptibility loci at chromosomes 15q25, 5p15, and 6p21: a pooled analysis from the International Lung Cancer Consortium. Truong T et al. 2010 Journal of the National Cancer Institute
20549820 Telomere length and genetic analyses in population-based studies of endometrial cancer risk. Prescott J et al. 2010 Cancer
20585100 Genome-wide association studies of cancer. Stadler ZK et al. 2010 Journal of clinical oncology
20597107 The association of telomere length and genetic variation in telomere biology genes. Mirabello L et al. 2010 Human mutation
20628624 Evaluation of candidate stromal epithelial cross-talk genes identifies association between risk of serous ovarian cancer and TERT, a cancer susceptibility "hot-spot". Johnatty SE et al. 2010 PLoS genetics
20700438 The 5p15.33 locus is associated with risk of lung adenocarcinoma in never-smoking females in Asia. Hsiung CA et al. 2010 PLoS genetics
20847058 Genetic risk profiles identify different molecular etiologies for glioma. Simon M et al. 2010 Clinical cancer research
20871597 Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations. Miki D et al. 2010 Nature genetics
20937264 Genetic variants in eleven telomere-associated genes and the risk of incident cardio/cerebrovascular disease: The Women's Genome Health Study. Zee RY et al. 2011 Clinica chimica acta; international journal of clinical chemistry
21081471 Genetic variations on chromosomes 5p15 and 15q25 and bladder cancer risk: findings from the Los Angeles-Shanghai bladder case-control study. Gago-Dominguez M et al. 2011 Carcinogenesis
21116649 Genetic variants in telomere-maintaining genes and skin cancer risk. Nan H et al. 2011 Human genetics
21203894 Cancer susceptibility variants and the risk of adult glioma in a US case-control study. Egan KM et al. 2011 Journal of neuro-oncology
21219822 [Recent progress in genetic variants associated with cancer and their implications in diagnostics development]. Cho WC et al. 2011 Zhongguo fei ai za zhi = Chinese journal of lung cancer
21258621 Genetic Variations in Telomere Maintenance, with Implications on Tissue Renewal Capacity and Chronic Disease Pathologies. Trudeau MA et al. 2010 Current pharmacogenomics and personalized medicine
21500120 Lung cancer in never smokers. Yang P et al. 2011 Seminars in respiratory and critical care medicine
21531791 Chromosome 7p11.2 (EGFR) variation influences glioma risk. Sanson M et al. 2011 Human molecular genetics
21551455 A second independent locus within DMRT1 is associated with testicular germ cell tumor susceptibility. Kanetsky PA et al. 2011 Human molecular genetics
21564132 A stratified genetic risk assessment for testicular cancer. Kratz CP et al. 2011 International journal of andrology
21617256 Variants in or near KITLG, BAK1, DMRT1, and TERT-CLPTM1L predispose to familial testicular germ cell tumour. Kratz CP et al. 2011 Journal of medical genetics
21708826 TERC polymorphisms are associated both with susceptibility to colorectal cancer and with longer telomeres. Jones AM et al. 2012 Gut
21725308 A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese. Hu Z et al. 2011 Nature genetics
21731055 Worldwide genetic structure in 37 genes important in telomere biology. Mirabello L et al. 2012 Heredity
21742680 Associations of high-grade glioma with glioma risk alleles and histories of allergy and smoking. Lachance DH et al. 2011 American journal of epidemiology
21771723 Novel genetic variants in the chromosome 5p15.33 region associate with lung cancer risk. Pande M et al. 2011 Carcinogenesis
21825990 Genetic causes of glioma: new leads in the labyrinth. Melin B et al. 2011 Current opinion in oncology
21827660 Combinations of newly confirmed Glioma-Associated loci link regions on chromosomes 1 and 9 to increased disease risk. Yang TH et al. 2011 BMC medical genomics
21920947 Joint associations between genetic variants and reproductive factors in glioma risk among women. Wang SS et al. 2011 American journal of epidemiology
21949822 Functional polymorphisms in the TERT promoter are associated with risk of serous epithelial ovarian and breast cancers. Beesley J et al. 2011 PloS one
21966413 Smoking related cancers and loci at chromosomes 15q25, 5p15, 6p22.1 and 6p21.33 in the Polish population. Jaworowska E et al. 2011 PloS one
22037553 A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor-negative breast cancer. Haiman CA et al. 2011 Nature genetics
22037877 Genome-wide high-density SNP linkage search for glioma susceptibility loci: results from the Gliogene Consortium. Shete S et al. 2011 Cancer research
22134622 Lack of association between common single nucleotide polymorphisms in the TERT-CLPTM1L locus and breast cancer in women of African ancestry. Zheng Y et al. 2012 Breast cancer research and treatment
22221621 The TERT rs2736100 polymorphism and cancer risk: a meta-analysis based on 25 case-control studies. Zou P et al. 2012 BMC cancer
22228261 Common genetic variants in TERT contribute to risk of cervical cancer in a Chinese population. Wang S et al. 2012 Molecular carcinogenesis
22267287 Telomere length and genetic variation in telomere maintenance genes in relation to ovarian cancer risk. Terry KL et al. 2012 Cancer epidemiology, biomarkers & prevention
22276117 The association between ATM IVS 22-77 T>C and cancer risk: a meta-analysis. Zhao L et al. 2012 PloS one
22351525 TERT's role in colorectal carcinogenesis. Pellatt AJ et al. 2013 Molecular carcinogenesis
22370939 Multiple variants of TERT and CLPTM1L constitute risk factors for lung adenocarcinoma. Chen XF et al. 2012 Genetics and molecular research
22382497 Lung cancer and DNA repair genes: multilevel association analysis from the International Lung Cancer Consortium. Kazma R et al. 2012 Carcinogenesis
22404340 Replication of results of genome-wide association studies on lung cancer susceptibility loci in a Korean population. Bae EY et al. 2012 Respirology (Carlton, Vic.)
22510351 Defining a gene promoter methylation signature in sputum for lung cancer risk assessment. Leng S et al. 2012 Clinical cancer research
22523397 Telomerase reverse transcriptase locus polymorphisms and cancer risk: a field synopsis and meta-analysis. Mocellin S et al. 2012 Journal of the National Cancer Institute
22539396 hTERT cancer risk genotypes are associated with telomere length. Melin BS et al. 2012 Genetic epidemiology
22585858 Inherited variation at chromosome 12p13.33, including RAD52, influences the risk of squamous cell lung carcinoma. Shi J et al. 2012 Cancer discovery
22586632 Variants in inflammation genes are implicated in risk of lung cancer in never smokers exposed to second-hand smoke. Spitz MR et al. 2011 Cancer discovery
22662130 Using prior information from the medical literature in GWAS of oral cancer identifies novel susceptibility variant on chromosome 4--the AdAPT method. Johansson M et al. 2012 PloS one
22711262 Systematic evaluation of bladder cancer risk-associated single-nucleotide polymorphisms in a Chinese population. Ma Z et al. 2013 Molecular carcinogenesis
22878375 The TERT variant rs2736100 is associated with colorectal cancer risk. Kinnersley B et al. 2012 British journal of cancer
22886559 Genome-wide association study of glioma and meta-analysis. Rajaraman P et al. 2012 Human genetics
22889990 Natural and orthogonal interaction framework for modeling gene-environment interactions with application to lung cancer. Ma J et al. 2012 Human heredity
22899653 Influence of common genetic variation on lung cancer risk: meta-analysis of 14 900 cases and 29 485 controls. Timofeeva MN et al. 2012 Human molecular genetics
22945651 Epigenetic screen identifies genotype-specific promoter DNA methylation and oncogenic potential of CHRNB4. Scherf DB et al. 2013 Oncogene
22988944 Network-based SNP meta-analysis identifies joint and disjoint genetic features across common human diseases. Arnold M et al. 2012 BMC genomics
23050049 Genetic and lifestyle influence on telomere length and subsequent risk of colon cancer in a case control study. Pellatt AJ et al. 2012 International journal of molecular epidemiology and genetics
23050056 Genetic variation in telomere maintenance genes in relation to ovarian cancer survival. Harris HR et al. 2012 International journal of molecular epidemiology and genetics
23091480 Leveraging ethnic group incidence variation to investigate genetic susceptibility to glioma: a novel candidate SNP approach. Jacobs DI et al. 2012 Frontiers in genetics
23115063 Known glioma risk loci are associated with glioma with a family history of brain tumours -- a case-control gene association study. Melin B et al. 2013 International journal of cancer
23161787 Association between glioma susceptibility loci and tumour pathology defines specific molecular etiologies. Di Stefano AL et al. 2013 Neuro-oncology
23221128 Fine-mapping of the 5p15.33, 6p22.1-p21.31, and 15q25.1 regions identifies functional and histology-specific lung cancer susceptibility loci in African-Americans. Walsh KM et al. 2013 Cancer epidemiology, biomarkers & prevention
23228068 Prediction of lung cancer risk in a Chinese population using a multifactorial genetic model. Li H et al. 2012 BMC medical genetics
23236348 EGFR gene variants are associated with specific somatic aberrations in glioma. Wibom C et al. 2012 PloS one
23267696 Association of genetic polymorphisms with chronic obstructive pulmonary disease in the Chinese Han population: a case-control study. Guo Y et al. 2012 BMC medical genomics
23349013 Genetic susceptibility to lung cancer--light at the end of the tunnel? Marshall AL et al. 2013 Carcinogenesis
23368278 Significant association of 5p15.33 (TERT-CLPTM1L genes) with lung cancer in Chinese Han population. Zhao Z et al. 2013 Experimental lung research
23370545 Hierarchical modeling identifies novel lung cancer susceptibility variants in inflammation pathways among 10,140 cases and 11,012 controls. Brenner DR et al. 2013 Human genetics
23408875 Getting more out of biomedical documents with GATE's full lifecycle open source text analytics. Cunningham H et al. 2013 PLoS computational biology
23433592 Genetic polymorphisms of TERT and CLPTM1L and risk of lung cancer--a case-control study in a Chinese population. Myneni AA et al. 2013 Lung cancer (Amsterdam, Netherlands)
23454887 Role of selected genetic variants in lung cancer risk in African Americans. Spitz MR et al. 2013 Journal of thoracic oncology
23469231 Pathway analysis for genome-wide association study of lung cancer in Han Chinese population. Zhang R et al. 2013 PloS one
23535824 Fine-mapping identifies multiple prostate cancer risk loci at 5p15, one of which associates with TERT expression. Kote-Jarai Z et al. 2013 Human molecular genetics
23583980 Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis. Fingerlin TE et al. 2013 Nature genetics
23707794 Genetic variants in TERT-CLPTM1L genetic region associated with several types of cancer: a meta-analysis. Li C et al. 2013 Gene
23733245 Genetic variants in telomerase-related genes are associated with an older age at diagnosis in glioma patients: evidence for distinct pathways of gliomagenesis. Walsh KM et al. 2013 Neuro-oncology
23772147 Genome-wide association study of lung cancer in Korean non-smoking women. Kim JH et al. 2013 Journal of Korean medical science
23870182 Bridging the clinical gaps: genetic, epigenetic and transcriptomic biomarkers for the early detection of lung cancer in the post-National Lung Screening Trial era. Brothers JF et al. 2013 BMC medicine
23903690 Joint effects between five identified risk variants, allergy, and autoimmune conditions on glioma risk. Safaeian M et al. 2013 Cancer causes & control
23946381 Genetic variants associated with colorectal cancer risk: comprehensive research synopsis, meta-analysis, and epidemiological evidence. Ma X et al. 2014 Gut
24269974 Genetic variants in telomerase reverse transcriptase (TERT) and telomerase-associated protein 1 (TEP1) and the risk of male infertility. Yan L et al. 2014 Gene
24274136 Biobanking across the phenome - at the center of chronic disease research. Imboden M et al. 2013 BMC public health
24283584 TERT genetic polymorphism rs2736100 was associated with lung cancer: a meta-analysis based on 14,492 subjects. Wang HM et al. 2013 Genetic testing and molecular biomarkers
24390616 Association between TERT rs2736100 polymorphism and lung cancer susceptibility: evidence from 22 case-control studies. Yuan Y et al. 2014 Tumour biology
24420154 TERT rs2736100T/G polymorphism upregulates interleukin 6 expression in non-small cell lung cancer especially in adenocarcinoma. Wang F et al. 2014 Tumour biology
24425829 Leukocyte telomere length associates with prospective mortality independent of immune-related parameters and known genetic markers. Deelen J et al. 2014 International journal of epidemiology
24434656 Association between MUC5B and TERT polymorphisms and different interstitial lung disease phenotypes. Wei R et al. 2014 Translational research
24476768 The germline sequence variant rs2736100_C in TERT associates with myeloproliferative neoplasms. Oddsson A et al. 2014 Leukemia
24535778 TERT rs2736100 polymorphism contributes to lung cancer risk: a meta-analysis including 49,869 cases and 73,464 controls. Nie W et al. 2014 Tumour biology
24580776 Stability SCAD: a powerful approach to detect interactions in large-scale genomic study. Gou J et al. 2014 BMC bioinformatics
24587672 New genes emerging for colorectal cancer predisposition. Esteban-Jurado C et al. 2014 World journal of gastroenterology
24590268 Increased lung cancer risk associated with the TERT rs2736100 polymorphism: an updated meta-analysis. Yang J et al. 2014 Tumour biology
24615522 Quantitative assessment of common genetic variants on chromosome 5p15 and lung cancer risk. Wu H et al. 2014 Tumour biology
24692499 Associations between 25 lung cancer risk-related SNPs and polycyclic aromatic hydrocarbon-induced genetic damage in coke oven workers. Dai X et al. 2014 Cancer epidemiology, biomarkers & prevention
24888789 Association between telomerase reverse transcriptase rs2736100 polymorphism and risk of glioma. Zhou P et al. 2014 The Journal of surgical research
24904205 Association between previously identified loci affecting telomere length and coronary heart disease (CHD) in Han Chinese population. Ding H et al. 2014 Clinical interventions in aging
25007268 TERT-CLPTM1L Rs401681 C>T polymorphism was associated with a decreased risk of esophageal cancer in a Chinese population. Yin J et al. 2014 PloS one
25037574 Genetic polymorphisms of TERT and CLPTM1L, cooking oil fume exposure, and risk of lung cancer: a case-control study in a Chinese non-smoking female population. Yin Z et al. 2014 Medical oncology (Northwood, London, England)
25196853 Common germline variation at the TERT locus contributes to familial clustering of myeloproliferative neoplasms. Jäger R et al. 2014 American journal of hematology
25233467 Role of nicotine dependence on the relationship between variants in the nicotinic receptor genes and risk of lung adenocarcinoma. Tseng TS et al. 2014 PloS one
25296732 TERT polymorphisms rs2853669 and rs7726159 influence on prostate cancer risk in Russian population. Shadrina AS et al. 2015 Tumour biology
25314060 TERT promoter mutations in gliomas, genetic associations and clinico-pathological correlations. Labussière M et al. 2014 British journal of cancer
25381796 Telomere length and the risk of atrial fibrillation: insights into the role of biological versus chronological aging. Roberts JD et al. 2014 Circulation. Arrhythmia and electrophysiology
25415319 Association of GWAS-identified lung cancer susceptibility loci with survival length in patients with small-cell lung cancer treated with platinum-based chemotherapy. Li D et al. 2014 PloS one
25487306 Candidate locus analysis of the TERT-CLPTM1L cancer risk region on chromosome 5p15 identifies multiple independent variants associated with endometrial cancer risk. Carvajal-Carmona LG et al. 2015 Human genetics
25516442 Genetic variants associated with longer telomere length are associated with increased lung cancer risk among never-smoking women in Asia: a report from the female lung cancer consortium in Asia. Machiela MJ et al. 2015 International journal of cancer
25738283 Association of genetic polymorphisms in the telomerase reverse transcriptase gene with prostate cancer aggressiveness. Wu D et al. 2015 Molecular medicine reports
25849990 Genetic variation at MECOM, TERT, JAK2 and HBS1L-MYB predisposes to myeloproliferative neoplasms. Tapper W et al. 2015 Nature communications
25940397 TERT gene harbors multiple variants associated with pancreatic cancer susceptibility. Campa D et al. 2015 International journal of cancer
26014354 CCDC26, CDKN2BAS, RTEL1 and TERT Polymorphisms in pediatric brain tumor susceptibility. Adel Fahmideh M et al. 2015 Carcinogenesis
26025910 Telomere length, genetic variants and gastric cancer risk in a Chinese population. Du J et al. 2015 Carcinogenesis
26138067 Genetic determinants of telomere length and risk of common cancers: a Mendelian randomization study. Zhang C et al. 2015 Human molecular genetics
26143636 TERT promoter mutations and polymorphisms as prognostic factors in primary glioblastoma. Mosrati MA et al. 2015 Oncotarget
26149460 TERT Polymorphism rs2736100-C Is Associated with EGFR Mutation-Positive Non-Small Cell Lung Cancer. Wei R et al. 2015 Clinical cancer research
26201603 Sequence variation in telomerase reverse transcriptase (TERT) as a determinant of risk of cardiovascular disease: the Atherosclerosis Risk in Communities (ARIC) study. Bressler J et al. 2015 BMC medical genetics
26243184 An Updated and Comprehensive Meta-Analysis of Association Between Seven Hot Loci Polymorphisms from Eight GWAS and Glioma Risk. Wu Q et al. 2016 Molecular neurobiology
26294352 Association of human telomerase reverse transcriptase gene polymorphisms, serum levels, and telomere length with renal cell carcinoma risk and pathology. de Martino M et al. 2016 Molecular carcinogenesis
26298771 Association between TERT promoter polymorphisms and acute myeloid leukemia risk and prognosis. Mosrati MA et al. 2015 Oncotarget
26309358 Influence of the hTERT rs2736100 polymorphism on telomere length in gastric cancer. Choi BJ et al. 2015 World journal of gastroenterology
26352532 Lung Cancer Risk Prediction Using Common SNPs Located in GWAS-Identified Susceptibility Regions. Weissfeld JL et al. 2015 Journal of thoracic oncology
26406970 hTERT genetic variation in depression. Wei YB et al. 2016 Journal of affective disorders
26487696 Co-occurrence of Myeloproliferative Neoplasms and Solid Tumors Is Attributed to a Synergism Between Cytoreductive Therapy and the Common TERT Polymorphism rs2736100. Krahling T et al. 2016 Cancer epidemiology, biomarkers & prevention
26501986 Telomerase Reverse Transcriptase (TERT) Gene Variations and Susceptibility of Colorectal Cancer. Jannuzzi AT et al. 2015 Genetic testing and molecular biomarkers
26590902 Fine mapping of chromosome 5p15.33 based on a targeted deep sequencing and high density genotyping identifies novel lung cancer susceptibility loci. Kachuri L et al. 2016 Carcinogenesis
26608520 TERT promoter mutations and rs2853669 polymorphism: prognostic impact and interactions with common alterations in glioblastomas. Nencha U et al. 2016 Journal of neuro-oncology
26621837 Common variations in TERT-CLPTM1L locus are reproducibly associated with the risk of nasopharyngeal carcinoma in Chinese populations. Zhang Y et al. 2016 Oncotarget
26646793 Longer genotypically-estimated leukocyte telomere length is associated with increased adult glioma risk. Walsh KM et al. 2015 Oncotarget
26716642 The identification of two regulatory ESCC susceptibility genetic variants in the TERT-CLPTM1L loci. Zhou L et al. 2016 Oncotarget
26792595 Genetic susceptibility loci of idiopathic interstitial pneumonia do not represent risk for systemic sclerosis: a case control study in Caucasian patients. Wu M et al. 2016 Arthritis research & therapy
26839018 Genetic risk variants in the CDKN2A/B, RTEL1 and EGFR genes are associated with somatic biomarkers in glioma. Ghasimi S et al. 2016 Journal of neuro-oncology
26843622 A TET2 rs3733609 C/T genotype is associated with predisposition to the myeloproliferative neoplasms harboring JAK2(V617F) and confers a proliferative potential on erythroid lineages. Shen XH et al. 2016 Oncotarget
26857734 Telomere length, genetic variants and risk of squamous cell carcinoma of the head and neck in Southeast Chinese. Gu Y et al. 2016 Scientific reports
26893575 Candidate genes of idiopathic pulmonary fibrosis: current evidence and research. Zhou W et al. 2016 The application of clinical genetics
26906551 Pre-diagnostic serum levels of EGFR and ErbB2 and genetic glioma risk variants: a nested case-control study. Späth F et al. 2016 Tumour biology
27016301 Polymorphisms in human telomerase reverse transcriptase (hTERT) gene and susceptibility to gastric cancer in a Turkish population: Hospital-based case-control study. Bayram S et al. 2016 Gene
27029497 Telomere length connects melanoma and glioma predispositions. Endicott AA et al. 2016 Aging
27078840 Genetic Variants Associated with Colorectal Adenoma Susceptibility. Abulí A et al. 2016 PloS one
27079684 Genome-wide association studies and epigenome-wide association studies go together in cancer control. Verma M et al. 2016 Future oncology (London, England)
27154632 Case-Control Study on Impact of the Telomerase Reverse Transcriptase Gene Polymorphism and Additional Single Nucleotide Polymorphism (SNP)- SNP Interaction on Non-Small Cell Lung Cancers Risk in Chinese Han Population. Xing YL et al. 2016 Journal of clinical laboratory analysis
27162544 Combining Telomerase Reverse Transcriptase Genetic Variant rs2736100 with Epidemiologic Factors in the Prediction of Lung Cancer Susceptibility. Wang X et al. 2016 Journal of Cancer
27167335 Relative telomere lengths in tumor and normal mucosa are related to disease progression and chromosome instability profiles in colorectal cancer. Suraweera N et al. 2016 Oncotarget
27185198 Functional evaluation of TERT-CLPTM1L genetic variants associated with susceptibility of papillary thyroid carcinoma. Ge M et al. 2016 Scientific reports
27186328 Genes, environment and gene expression in colon tissue: a pathway approach to determining functionality. Slattery ML et al. 2016 International journal of molecular epidemiology and genetics
27191258 Rs2853677 modulates Snail1 binding to the TERT enhancer and affects lung adenocarcinoma susceptibility. Li X et al. 2016 Oncotarget
27336831 Association Between Human Telomerase Reverse Transcriptase Gene Variations and Risk of Developing Breast Cancer. Oztas E et al. 2016 Genetic testing and molecular biomarkers
27365426 Germ line variants predispose to both JAK2 V617F clonal hematopoiesis and myeloproliferative neoplasms. Hinds DA et al. 2016 Blood
27367732 Human Specific Regulation of the Telomerase Reverse Transcriptase Gene. Zhang F et al. 2016 Genes
27391763 Longitudinal decline of leukocyte telomere length in old age and the association with sex and genetic risk. Berglund K et al. 2016 Aging
27424552 Genomics era and complex disorders: Implications of GWAS with special reference to coronary artery disease, type 2 diabetes mellitus, and cancers. Pranavchand R et al. 2016 Journal of postgraduate medicine
27462317 Association Study for 26 Candidate Loci in Idiopathic Pulmonary Fibrosis Patients from Four European Populations. Kishore A et al. 2016 Frontiers in immunology
27501781 Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma. Shiraishi K et al. 2016 Nature communications
27561898 TERT rs2736100 genotypes are associated with differential risk of myeloproliferative neoplasms in Swedish and Chinese male patient populations. Dahlström J et al. 2016 Annals of hematology
27780202 Relation between Established Glioma Risk Variants and DNA Methylation in the Tumor. Dahlin AM et al. 2016 PloS one
27804980 Novel identified associations of RGS1 and RASGRP1 variants in IgA Nephropathy. Zhou XJ et al. 2016 Scientific reports
27805284 Susceptibility loci of CNOT6 in the general mRNA degradation pathway and lung cancer risk-A re-analysis of eight GWASs. Zhou F et al. 2017 Molecular carcinogenesis
27812514 Association between Genetic Variations Affecting Mean Telomere Length and the Prevalence of Hypertension and Coronary Heart Disease in Koreans. Paik JK et al. 2016 Clinical nutrition research
27929092 The known genetic loci for telomere length may be involved in the modification of telomeres length after birth. Weng Q et al. 2016 Scientific reports
28195142 A genome-wide association study yields five novel thyroid cancer risk loci. Gudmundsson J et al. 2017 Nature communications
28233473 Genetic variants in telomere-maintenance genes are associated with ovarian cancer risk and outcome. Sun Y et al. 2017 Journal of cellular and molecular medicine
28233563 Genetic predisposition to advanced biological ageing increases risk for childhood-onset recurrent major depressive disorder in a large UK sample. Michalek JE et al. 2017 Journal of affective disorders
28264873 Genetically Predicted Telomere Length is not Associated with Pancreatic Cancer Risk. Antwi SO et al. 2017 Cancer epidemiology, biomarkers & prevention
28300824 Association Between the Telomerase rs2736098_TT Genotype and a Lower Risk of Chronic Hepatitis B and Cirrhosis in Chinese Males. Cheng G et al. 2017 Clinical and translational gastroenterology
28416747 The TERT promoter mutation incidence is modified by germline TERT rs2736098 and rs2736100 polymorphisms in hepatocellular carcinoma. Yuan X et al. 2017 Oncotarget
28418878 The TERT rs2736100 polymorphism increases cancer risk: A meta-analysis. Li H et al. 2017 Oncotarget
28423629 Polymorphisms in human telomerase reverse transcriptase (hTERT) gene, gene- gene and gene-smoking interaction with susceptibility to gastric cancer in Chinese Han population. Zhang J et al. 2017 Oncotarget
28587656 The correlations between DNA methylation and polymorphisms in the promoter region of the human telomerase reverse transcriptase (hTERT) gene with postoperative recurrence in patients with thyroid carcinoma (TC). Li JJ et al. 2017 World journal of surgical oncology
28827732 Genetic predisposition to lung cancer: comprehensive literature integration, meta-analysis, and multiple evidence assessment of candidate-gene association studies. Wang J et al. 2017 Scientific reports
28862766 Genomic profiles of lung cancer associated with idiopathic pulmonary fibrosis. Hwang JA et al. 2018 The Journal of pathology
29047144 MECOM, HBS1L-MYB, THRB-RARB, JAK2, and TERT polymorphisms defining the genetic predisposition to myeloproliferative neoplasms: A study on 939 patients. Trifa AP et al. 2018 American journal of hematology
29100304 Germline variations at JAK2, TERT, HBS1L-MYB and MECOM and the risk of myeloproliferative neoplasms in Taiwanese population. Chiang YH et al. 2017 Oncotarget
29133146 Association of genetic polymorphisms with erythrocyte traits: Verification of SNPs reported in a previous GWAS in a Japanese population. Seiki T et al. 2018 Gene
29332343 Clinical relevance of telomerase polymorphism for breast cancer: A systematic review. de Souza Rodrigues K et al. 2017 Journal of B.U.ON.
29450669 Association of TERT-CLPTM1L and 8q24 Common Genetic Variants with Gallbladder Cancer Susceptibility and Prognosis in North Indian Population. Yadav S et al. 2018 Biochemical genetics
29506639 Genetic polymorphisms in human telomerase reverse transcriptase (hTERT) gene polymorphisms do not associated with breast cancer in patients in a turkish population: hospital-based case-control study. Aydin M et al. 2018 Cellular and molecular biology (Noisy-le-Grand, France)
29536006 Telomerase Reverse Transcriptase Polymorphism rs2736100: A Balancing Act between Cancer and Non-Cancer Disease, a Meta-Analysis. Snetselaar R et al. 2018 Frontiers in medicine
29688369 The SNPcurator: literature mining of enriched SNP-disease associations. Tawfik NS et al. 2018 Database
29771920 Maternal human telomerase reverse transcriptase variants are associated with preterm labor and preterm premature rupture of membranes. Marrs C et al. 2018 PloS one
29809284 Fine mapping in TERT-CLPTM1L region identified three independent lung cancer susceptibility signals: A large-scale multi-ethnic population study. Li Z et al. 2018 Molecular carcinogenesis
29967663 Occupational Exposure to Pesticides in Tobacco Fields: The Integrated Evaluation of Nutritional Intake and Susceptibility on Genomic and Epigenetic Instability. Kahl VFS et al. 2018 Oxidative medicine and cellular longevity
30012914 Genotyping of single nucleotide polymorphisms using the SNP-RFLP method. Saifullah et al. 2018 Bioscience trends
30325019 Genetic determinants of telomere length and risk of pancreatic cancer: A PANDoRA study. Campa D et al. 2019 International journal of cancer
30337837 Single nucleotide polymorphisms and sporadic colorectal cancer susceptibility: a field synopsis and meta-analysis. Wen J et al. 2018 Cancer cell international
30685566 Telomere shortening in blood leukocytes of patients with posttraumatic stress disorder. Avetyan D et al. 2019 Journal of psychiatric research
30738744 The TERT locus genotypes of rs2736100-CC/CA and rs2736098-AA predict shorter survival in renal cell carcinoma. Ma R et al. 2019 Urologic oncology
30769869 No Causal Effect of Telomere Length on Ischemic Stroke and Its Subtypes: A Mendelian Randomization Study. Cao W et al. 2019 Cells
30796745 Longer genotypically-estimated leukocyte telomere length is associated with increased meningioma risk. Muskens IS et al. 2019 Journal of neuro-oncology
31146136 Genetic polymorphisms, mRNA expression levels of telomere-binding proteins, and associates with telomere damage in PAHs-Exposure workers. Duan X et al. 2019 Chemosphere
31239704 Variability within the human TERT gene, telomere length and predisposition to chronic lymphocytic leukemia. Wysoczanska B et al. 2019 OncoTargets and therapy
31388112 Association between common telomere length genetic variants and telomere length in an African population and impacts of HIV and TB. Wang S et al. 2019 Journal of human genetics
31429604 Polymorphisms of the TERT-CLPTM1L Gene Are Associated with Pharynx-Larynx Cancer. Yu J et al. 2019 DNA and cell biology
31538903 Association between hTERT Polymorphisms and Female Papillary Thyroid Carcinoma. Liu Y et al. 2019 Recent patents on anti-cancer drug discovery
31571131 TERT and JAK2 polymorphisms define genetic predisposition to myeloproliferative neoplasms in Japanese patients. Matsuguma M et al. 2019 International journal of hematology
31651569 Associations of telomerase reverse transcriptase rs10069690 and rs2736100 polymorphisms with papillary thyroid carcinoma. Liu Y et al. 2020 European journal of cancer prevention
31653936 The relationship between MUC5B promoter, TERT polymorphisms and telomere lengths with radiographic extent and survival in a Chinese IPF cohort. Wang H et al. 2019 Scientific reports
31721021 Replication of GWAS identifies RTEL1, CDKN2A/B, and PHLDB1 SNPs as risk factors in Portuguese gliomas patients. Viana-Pereira M et al. 2020 Molecular biology reports
31818908 Systematic meta-analyses, field synopsis and global assessment of the evidence of genetic association studies in colorectal cancer. Montazeri Z et al. 2020 Gut
32022527 Synchronous and multiple renal cell carcinoma, clear cell and papillary: An approach to clinically significant genetic abnormalities. Cifuentes-C L et al. 2020 International braz j urol
32202925 The TERT rs2736100 Polymorphism and Susceptibility to Myeloproliferative Neoplasms: A Systematic Review and Meta-Analysis. Hong T et al. 2020 Genetic testing and molecular biomarkers
32212792 Association between Telomere-Related Polymorphisms and the Risk of IPF and COPD as a Precursor Lesion of Lung Cancer: Findings from the Fukuoka Tobacco-Related Lung Disease (FOLD) Registry. Arimura-Omori M et al. 2020 Asian Pacific journal of cancer prevention
32333749 NAF1 rs4691896 Is Significantly Associated with Coal Workers' Pneumoconiosis in a Chinese Han Population: A Case-Control Study. Yuan B et al. 2020 Medical science monitor
32366311 The telomerase gene polymorphisms, but not telomere length, increase susceptibility to primary glomerulonephritis/end stage renal diseases in females. Sun Q et al. 2020 Journal of translational medicine
32401182 Association of hTERT SNP (rs2736100) with implantation failure after in vitro fertilization and embryo transfer (IVF-ET). Tajalli S et al. 2021 British journal of biomedical science
32694935 Association between TERT gene polymorphisms and acute myeloid leukemia susceptibility in a Chinese population: a case-control study. Tong Y et al. 2020 Cancer cell international
32728337 Computational Prediction of Probable Single Nucleotide Polymorphism-Cancer Relationships. Bakhtiari S et al. 2020 Cancer informatics
32783258 Association of strong risk of hTERT gene polymorphic variants to malignant glioma and its prognostic implications with respect to different histological types and survival of glioma cases. Pandith AA et al. 2020 The journal of gene medicine
32873778 Genetic polymorphisms associated with telomere length and risk of developing myeloproliferative neoplasms. Giaccherini M et al. 2020 Blood cancer journal
32894086 MassARRAY-based single nucleotide polymorphism analysis in breast cancer of north Indian population. Bakshi D et al. 2020 BMC cancer
32922179 Shorter Leukocyte Telomere Length coupled with lower expression of Telomerase Genes in patients with Essential Hypertension. Cheng G et al. 2020 International journal of medical sciences
32922609 Patients with benign prostatic hyperplasia show shorter leukocyte telomere length but no association with telomerase gene polymorphisms in Han Chinese males. Cheng G et al. 2020 International journal of clinical and experimental pathology
32937184 The influence of TERC, TERT and ACYP2 genes polymorphisms on plasma telomerase concentration, telomeres length and T2DM. AlDehaini DMB et al. 2021 Gene
33020596 Searching for causal relationships of glioma: a phenome-wide Mendelian randomisation study. Saunders CN et al. 2021 British journal of cancer
33076992 Association of TERT and DSP variants with microscopic polyangiitis and myeloperoxidase-ANCA positive vasculitis in a Japanese population: a genetic association study. Kawasaki A et al. 2020 Arthritis research & therapy
33718071 Association of TERT gene polymorphisms with clinical benign prostatic hyperplasia in a Chinese Han population of the Northwest region. Fan G et al. 2021 Translational andrology and urology
33906323 The Association of Aging-Related Polymorphisms with Susceptibility to Lung Cancer: A Case-Control Study in a Japanese Population. Furuie H et al. 2021 Asian Pacific journal of cancer prevention
33993221 Pulmonary fibrosis in relation to genetic loci in an inception cohort of patients with early rheumatoid arthritis from northern Sweden. Jönsson E et al. 2022 Rheumatology (Oxford, England)
34113796 Analogous telomeres shortening and different metabolic profile: hypertension versus hypertension/type 2 diabetes mellitus comorbidity. AlDehaini DMB et al. 2021 Cardiovascular endocrinology & metabolism
34181135 TERT Gene rs2736100 and rs2736098 Polymorphisms are Associated with Increased Cancer Risk: A Meta-Analysis. Zhang X et al. 2022 Biochemical genetics
34490311 Differential Genomic Profile in TERT, DSP, and FAM13A Between COPD Patients With Emphysema, IPF, and CPFE Syndrome. Guzmán-Vargas J et al. 2021 Frontiers in medicine
34540891 Umbrella Review on Associations Between Single Nucleotide Polymorphisms and Lung Cancer Risk. Li X et al. 2021 Frontiers in molecular biosciences
34850768 Association between the rs2736100 polymorphisms of telomerase reverse transcriptase gene and digestive cancers: A meta-analysis. Song H et al. 2021 Journal of cancer research and therapeutics
34950210 Genetic Variants Associated with Thyroid Cancer Risk: Comprehensive Research Synopsis, Meta-Analysis, and Cumulative Epidemiological Evidence. Ran R et al. 2021 Journal of oncology
35098380 The association of telomere maintenance and TERT expression with susceptibility to human papillomavirus infection in cervical epithelium. Wang LN et al. 2022 Cellular and molecular life sciences
35101137 Gene-gene interaction of AhRwith and within the Wntcascade affects susceptibility to lung cancer. Rosenberger A et al. 2022 European journal of medical research
35154531 TERT rs2853669 as a predictor for overall survival in patients with acute myeloid leukaemia. Tripon F et al. 2022 Archives of medical science
35159976 Assessment of Telomerase Reverse Transcriptase Single Nucleotide Polymorphism in Sleep Bruxism. Macek P et al. 2022 Journal of clinical medicine
35251326 Role of hTERT rs2736100 in pathological scarring. Ilieș RF et al. 2022 Experimental and therapeutic medicine
35368045 Predicted leukocyte telomere length and risk of germ cell tumours. Cigan SS et al. 2022 British journal of cancer
35760210 Genetic susceptibility to telomere shortening through the rs2293607 polymorphism is associated with a greater risk of alcohol use disorder. Llorente H et al. 2022 Mechanisms of ageing and development
35847915 Cumulative Evidence for Relationships Between Multiple Variants in the TERT and CLPTM1L Region and Risk of Cancer and Non-Cancer Disease. Tian J et al. 2022 Frontiers in oncology
Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d