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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs6180

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr5:42719137 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
A>C / A>G
Variation Type
SNV Single Nucleotide Variation
Frequency
C=0.459151 (171572/373672, ALFA)
C=0.430062 (113833/264690, TOPMED)
C=0.436149 (109339/250692, GnomAD_exome) (+ 25 more)
C=0.426161 (59654/139980, GnomAD)
C=0.443386 (53569/120818, ExAC)
C=0.41155 (32389/78700, PAGE_STUDY)
A=0.44306 (12520/28258, 14KJPN)
A=0.44189 (7406/16760, 8.3KJPN)
C=0.4399 (2817/6404, 1000G_30x)
C=0.4445 (2226/5008, 1000G)
C=0.4335 (1942/4480, Estonian)
C=0.4455 (1717/3854, ALSPAC)
C=0.4461 (1654/3708, TWINSUK)
A=0.3874 (1135/2930, KOREAN)
C=0.4779 (996/2084, HGDP_Stanford)
C=0.4677 (883/1888, HapMap)
A=0.3865 (708/1832, Korea1K)
A=0.4903 (555/1132, Daghestan)
C=0.456 (455/998, GoNL)
C=0.398 (239/600, NorthernSweden)
A=0.479 (282/589, Vietnamese)
C=0.455 (243/534, MGP)
A=0.340 (123/362, SGDP_PRJ)
C=0.385 (117/304, FINRISK)
C=0.403 (87/216, Qatari)
C=0.47 (38/80, Ancient Sardinia)
C=0.47 (19/40, GENOME_DK)
A=0.26 (10/38, Siberian)
Clinical Significance
Reported in ClinVar
Gene : Consequence
GHR : Missense Variant
Publications
13 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 390148 A=0.541369 C=0.458631 0.293801 0.211063 0.495135 1
European Sub 332856 A=0.540943 C=0.459057 0.292847 0.210962 0.496191 0
African Sub 16542 A=0.60410 C=0.39590 0.362592 0.154395 0.483013 0
African Others Sub 592 A=0.627 C=0.373 0.381757 0.128378 0.489865 0
African American Sub 15950 A=0.60326 C=0.39674 0.361881 0.155361 0.482759 0
Asian Sub 6960 A=0.3955 C=0.6045 0.15546 0.364368 0.480172 0
East Asian Sub 4994 A=0.3859 C=0.6141 0.144974 0.373248 0.481778 0
Other Asian Sub 1966 A=0.4201 C=0.5799 0.182096 0.341811 0.476094 0
Latin American 1 Sub 1424 A=0.5400 C=0.4600 0.283708 0.203652 0.51264 0
Latin American 2 Sub 3158 A=0.6409 C=0.3591 0.416719 0.134896 0.448385 1
South Asian Sub 5224 A=0.5412 C=0.4588 0.301302 0.218989 0.479709 2
Other Sub 23984 A=0.53336 C=0.46664 0.282522 0.215811 0.501668 0


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
Allele Frequency Aggregator Total Global 373672 A=0.540849 C=0.459151
Allele Frequency Aggregator European Sub 322670 A=0.541175 C=0.458825
Allele Frequency Aggregator Other Sub 22532 A=0.53275 C=0.46725
Allele Frequency Aggregator African Sub 11704 A=0.60680 C=0.39320
Allele Frequency Aggregator Asian Sub 6960 A=0.3955 C=0.6045
Allele Frequency Aggregator South Asian Sub 5224 A=0.5412 C=0.4588
Allele Frequency Aggregator Latin American 2 Sub 3158 A=0.6409 C=0.3591
Allele Frequency Aggregator Latin American 1 Sub 1424 A=0.5400 C=0.4600
TopMed Global Study-wide 264690 A=0.569938 C=0.430062
gnomAD - Exomes Global Study-wide 250692 A=0.563851 C=0.436149
gnomAD - Exomes European Sub 134854 A=0.558760 C=0.441240
gnomAD - Exomes Asian Sub 48940 A=0.48445 C=0.51555
gnomAD - Exomes American Sub 34490 A=0.67538 C=0.32462
gnomAD - Exomes African Sub 16226 A=0.61309 C=0.38691
gnomAD - Exomes Ashkenazi Jewish Sub 10070 A=0.56753 C=0.43247
gnomAD - Exomes Other Sub 6112 A=0.5458 C=0.4542
gnomAD - Genomes Global Study-wide 139980 A=0.573839 C=0.426161
gnomAD - Genomes European Sub 75826 A=0.55555 C=0.44445
gnomAD - Genomes African Sub 41948 A=0.60782 C=0.39218
gnomAD - Genomes American Sub 13628 A=0.61366 C=0.38634
gnomAD - Genomes Ashkenazi Jewish Sub 3322 A=0.5527 C=0.4473
gnomAD - Genomes East Asian Sub 3110 A=0.4164 C=0.5836
gnomAD - Genomes Other Sub 2146 A=0.5638 C=0.4362
ExAC Global Study-wide 120818 A=0.556614 C=0.443386
ExAC Europe Sub 72972 A=0.55440 C=0.44560
ExAC Asian Sub 25100 A=0.48733 C=0.51267
ExAC American Sub 11472 A=0.67530 C=0.32470
ExAC African Sub 10382 A=0.61115 C=0.38885
ExAC Other Sub 892 A=0.526 C=0.474
The PAGE Study Global Study-wide 78700 A=0.58845 C=0.41155
The PAGE Study AfricanAmerican Sub 32516 A=0.61336 C=0.38664
The PAGE Study Mexican Sub 10810 A=0.65939 C=0.34061
The PAGE Study Asian Sub 8318 A=0.4419 C=0.5581
The PAGE Study PuertoRican Sub 7916 A=0.5757 C=0.4243
The PAGE Study NativeHawaiian Sub 4534 A=0.5340 C=0.4660
The PAGE Study Cuban Sub 4230 A=0.5650 C=0.4350
The PAGE Study Dominican Sub 3828 A=0.5797 C=0.4203
The PAGE Study CentralAmerican Sub 2450 A=0.6465 C=0.3535
The PAGE Study SouthAmerican Sub 1982 A=0.6085 C=0.3915
The PAGE Study NativeAmerican Sub 1260 A=0.5849 C=0.4151
The PAGE Study SouthAsian Sub 856 A=0.525 C=0.475
14KJPN JAPANESE Study-wide 28258 A=0.44306 C=0.55694
8.3KJPN JAPANESE Study-wide 16760 A=0.44189 C=0.55811
1000Genomes_30x Global Study-wide 6404 A=0.5601 C=0.4399
1000Genomes_30x African Sub 1786 A=0.6232 C=0.3768
1000Genomes_30x Europe Sub 1266 A=0.5679 C=0.4321
1000Genomes_30x South Asian Sub 1202 A=0.5507 C=0.4493
1000Genomes_30x East Asian Sub 1170 A=0.4316 C=0.5684
1000Genomes_30x American Sub 980 A=0.600 C=0.400
1000Genomes Global Study-wide 5008 A=0.5555 C=0.4445
1000Genomes African Sub 1322 A=0.6210 C=0.3790
1000Genomes East Asian Sub 1008 A=0.4306 C=0.5694
1000Genomes Europe Sub 1006 A=0.5815 C=0.4185
1000Genomes South Asian Sub 978 A=0.538 C=0.462
1000Genomes American Sub 694 A=0.599 C=0.401
Genetic variation in the Estonian population Estonian Study-wide 4480 A=0.5665 C=0.4335
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 A=0.5545 C=0.4455
UK 10K study - Twins TWIN COHORT Study-wide 3708 A=0.5539 C=0.4461
KOREAN population from KRGDB KOREAN Study-wide 2930 A=0.3874 C=0.6126, G=0.0000
HGDP-CEPH-db Supplement 1 Global Study-wide 2084 A=0.5221 C=0.4779
HGDP-CEPH-db Supplement 1 Est_Asia Sub 470 A=0.419 C=0.581
HGDP-CEPH-db Supplement 1 Central_South_Asia Sub 414 A=0.464 C=0.536
HGDP-CEPH-db Supplement 1 Middle_Est Sub 350 A=0.414 C=0.586
HGDP-CEPH-db Supplement 1 Europe Sub 320 A=0.531 C=0.469
HGDP-CEPH-db Supplement 1 Africa Sub 242 A=0.736 C=0.264
HGDP-CEPH-db Supplement 1 America Sub 216 A=0.750 C=0.250
HGDP-CEPH-db Supplement 1 Oceania Sub 72 A=0.61 C=0.39
HapMap Global Study-wide 1888 A=0.5323 C=0.4677
HapMap American Sub 766 A=0.522 C=0.478
HapMap African Sub 692 A=0.605 C=0.395
HapMap Asian Sub 254 A=0.382 C=0.618
HapMap Europe Sub 176 A=0.506 C=0.494
Korean Genome Project KOREAN Study-wide 1832 A=0.3865 C=0.6135
Genome-wide autozygosity in Daghestan Global Study-wide 1132 A=0.4903 C=0.5097
Genome-wide autozygosity in Daghestan Daghestan Sub 628 A=0.479 C=0.521
Genome-wide autozygosity in Daghestan Near_East Sub 144 A=0.472 C=0.528
Genome-wide autozygosity in Daghestan Central Asia Sub 118 A=0.492 C=0.508
Genome-wide autozygosity in Daghestan Europe Sub 108 A=0.528 C=0.472
Genome-wide autozygosity in Daghestan South Asian Sub 98 A=0.58 C=0.42
Genome-wide autozygosity in Daghestan Caucasus Sub 36 A=0.39 C=0.61
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 A=0.544 C=0.456
Northern Sweden ACPOP Study-wide 600 A=0.602 C=0.398
A Vietnamese Genetic Variation Database Global Study-wide 589 A=0.479 C=0.521
Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 A=0.545 C=0.455
SGDP_PRJ Global Study-wide 362 A=0.340 C=0.660
FINRISK Finnish from FINRISK project Study-wide 304 A=0.615 C=0.385
Qatari Global Study-wide 216 A=0.597 C=0.403
Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 80 A=0.53 C=0.47
The Danish reference pan genome Danish Study-wide 40 A=0.53 C=0.47
Siberian Global Study-wide 38 A=0.26 C=0.74
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 5 NC_000005.10:g.42719137A>C
GRCh38.p14 chr 5 NC_000005.10:g.42719137A>G
GRCh37.p13 chr 5 NC_000005.9:g.42719239A>C
GRCh37.p13 chr 5 NC_000005.9:g.42719239A>G
GHR RefSeqGene NG_011688.2:g.300214A>C
GHR RefSeqGene NG_011688.2:g.300214A>G
Gene: GHR, growth hormone receptor (plus strand)
Molecule type Change Amino acid[Codon] SO Term
GHR transcript variant 12 NM_001242462.1:c.*672= N/A 3 Prime UTR Variant
GHR transcript variant 10 NM_001242460.1:c.1564A>C I [ATC] > L [CTC] Coding Sequence Variant
growth hormone receptor isoform 3 precursor NP_001229389.1:p.Ile522Leu I (Ile) > L (Leu) Missense Variant
GHR transcript variant 10 NM_001242460.1:c.1564A>G I [ATC] > V [GTC] Coding Sequence Variant
growth hormone receptor isoform 3 precursor NP_001229389.1:p.Ile522Val I (Ile) > V (Val) Missense Variant
GHR transcript variant 2 NM_001242399.2:c.1651A>C I [ATC] > L [CTC] Coding Sequence Variant
growth hormone receptor isoform 2 precursor NP_001229328.1:p.Ile551Leu I (Ile) > L (Leu) Missense Variant
GHR transcript variant 2 NM_001242399.2:c.1651A>G I [ATC] > V [GTC] Coding Sequence Variant
growth hormone receptor isoform 2 precursor NP_001229328.1:p.Ile551Val I (Ile) > V (Val) Missense Variant
GHR transcript variant 3 NM_001242400.2:c.1630A>C I [ATC] > L [CTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229329.1:p.Ile544Leu I (Ile) > L (Leu) Missense Variant
GHR transcript variant 3 NM_001242400.2:c.1630A>G I [ATC] > V [GTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229329.1:p.Ile544Val I (Ile) > V (Val) Missense Variant
GHR transcript variant 5 NM_001242402.2:c.1630A>C I [ATC] > L [CTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229331.1:p.Ile544Leu I (Ile) > L (Leu) Missense Variant
GHR transcript variant 5 NM_001242402.2:c.1630A>G I [ATC] > V [GTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229331.1:p.Ile544Val I (Ile) > V (Val) Missense Variant
GHR transcript variant 7 NM_001242404.2:c.1630A>C I [ATC] > L [CTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229333.1:p.Ile544Leu I (Ile) > L (Leu) Missense Variant
GHR transcript variant 7 NM_001242404.2:c.1630A>G I [ATC] > V [GTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229333.1:p.Ile544Val I (Ile) > V (Val) Missense Variant
GHR transcript variant 8 NM_001242405.2:c.1630A>C I [ATC] > L [CTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229334.1:p.Ile544Leu I (Ile) > L (Leu) Missense Variant
GHR transcript variant 8 NM_001242405.2:c.1630A>G I [ATC] > V [GTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229334.1:p.Ile544Val I (Ile) > V (Val) Missense Variant
GHR transcript variant 9 NM_001242406.2:c.1630A>C I [ATC] > L [CTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229335.1:p.Ile544Leu I (Ile) > L (Leu) Missense Variant
GHR transcript variant 9 NM_001242406.2:c.1630A>G I [ATC] > V [GTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229335.1:p.Ile544Val I (Ile) > V (Val) Missense Variant
GHR transcript variant 1 NM_000163.5:c.1630A>C I [ATC] > L [CTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_000154.1:p.Ile544Leu I (Ile) > L (Leu) Missense Variant
GHR transcript variant 1 NM_000163.5:c.1630A>G I [ATC] > V [GTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_000154.1:p.Ile544Val I (Ile) > V (Val) Missense Variant
GHR transcript variant 4 NM_001242401.4:c.1630A>C I [ATC] > L [CTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229330.1:p.Ile544Leu I (Ile) > L (Leu) Missense Variant
GHR transcript variant 4 NM_001242401.4:c.1630A>G I [ATC] > V [GTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229330.1:p.Ile544Val I (Ile) > V (Val) Missense Variant
GHR transcript variant 6 NM_001242403.3:c.1630A>C I [ATC] > L [CTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229332.1:p.Ile544Leu I (Ile) > L (Leu) Missense Variant
GHR transcript variant 6 NM_001242403.3:c.1630A>G I [ATC] > V [GTC] Coding Sequence Variant
growth hormone receptor isoform 1 precursor NP_001229332.1:p.Ile544Val I (Ile) > V (Val) Missense Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Allele: C (allele ID: 23697 )
ClinVar Accession Disease Names Clinical Significance
RCV000009190.8 Hypercholesterolemia, familial, 1 Risk-Factor
RCV000173652.7 not specified Benign
RCV000392579.5 Laron-type isolated somatotropin defect Benign
RCV001701562.2 Short stature due to partial GHR deficiency Benign
RCV001719693.4 not provided Benign
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement A= C G
GRCh38.p14 chr 5 NC_000005.10:g.42719137= NC_000005.10:g.42719137A>C NC_000005.10:g.42719137A>G
GRCh37.p13 chr 5 NC_000005.9:g.42719239= NC_000005.9:g.42719239A>C NC_000005.9:g.42719239A>G
GHR RefSeqGene NG_011688.2:g.300214= NG_011688.2:g.300214A>C NG_011688.2:g.300214A>G
GHR transcript variant 1 NM_000163.5:c.1630= NM_000163.5:c.1630A>C NM_000163.5:c.1630A>G
GHR transcript variant 1 NM_000163.4:c.1630= NM_000163.4:c.1630A>C NM_000163.4:c.1630A>G
GHR transcript variant 4 NM_001242401.4:c.1630= NM_001242401.4:c.1630A>C NM_001242401.4:c.1630A>G
GHR transcript variant 4 NM_001242401.3:c.1630= NM_001242401.3:c.1630A>C NM_001242401.3:c.1630A>G
GHR transcript variant 6 NM_001242403.3:c.1630= NM_001242403.3:c.1630A>C NM_001242403.3:c.1630A>G
GHR transcript variant 6 NM_001242403.2:c.1630= NM_001242403.2:c.1630A>C NM_001242403.2:c.1630A>G
GHR transcript variant 3 NM_001242400.2:c.1630= NM_001242400.2:c.1630A>C NM_001242400.2:c.1630A>G
GHR transcript variant 9 NM_001242406.2:c.1630= NM_001242406.2:c.1630A>C NM_001242406.2:c.1630A>G
GHR transcript variant 2 NM_001242399.2:c.1651= NM_001242399.2:c.1651A>C NM_001242399.2:c.1651A>G
GHR transcript variant 7 NM_001242404.2:c.1630= NM_001242404.2:c.1630A>C NM_001242404.2:c.1630A>G
GHR transcript variant 5 NM_001242402.2:c.1630= NM_001242402.2:c.1630A>C NM_001242402.2:c.1630A>G
GHR transcript variant 8 NM_001242405.2:c.1630= NM_001242405.2:c.1630A>C NM_001242405.2:c.1630A>G
GHR transcript variant 10 NM_001242460.1:c.1564= NM_001242460.1:c.1564A>C NM_001242460.1:c.1564A>G
GHR transcript variant 12 NM_001242462.1:c.*672= NM_001242462.1:c.*672A>C NM_001242462.1:c.*672A>G
GHR transcript variant 11 NM_001242461.1:c.*710= NM_001242461.1:c.*710A>C NM_001242461.1:c.*710A>G
growth hormone receptor isoform 1 precursor NP_000154.1:p.Ile544= NP_000154.1:p.Ile544Leu NP_000154.1:p.Ile544Val
growth hormone receptor isoform 1 precursor NP_001229330.1:p.Ile544= NP_001229330.1:p.Ile544Leu NP_001229330.1:p.Ile544Val
growth hormone receptor isoform 1 precursor NP_001229332.1:p.Ile544= NP_001229332.1:p.Ile544Leu NP_001229332.1:p.Ile544Val
growth hormone receptor isoform 1 precursor NP_001229329.1:p.Ile544= NP_001229329.1:p.Ile544Leu NP_001229329.1:p.Ile544Val
growth hormone receptor isoform 1 precursor NP_001229335.1:p.Ile544= NP_001229335.1:p.Ile544Leu NP_001229335.1:p.Ile544Val
growth hormone receptor isoform 2 precursor NP_001229328.1:p.Ile551= NP_001229328.1:p.Ile551Leu NP_001229328.1:p.Ile551Val
growth hormone receptor isoform 1 precursor NP_001229333.1:p.Ile544= NP_001229333.1:p.Ile544Leu NP_001229333.1:p.Ile544Val
growth hormone receptor isoform 1 precursor NP_001229331.1:p.Ile544= NP_001229331.1:p.Ile544Leu NP_001229331.1:p.Ile544Val
growth hormone receptor isoform 1 precursor NP_001229334.1:p.Ile544= NP_001229334.1:p.Ile544Leu NP_001229334.1:p.Ile544Val
growth hormone receptor isoform 3 precursor NP_001229389.1:p.Ile522= NP_001229389.1:p.Ile522Leu NP_001229389.1:p.Ile522Val
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

198 SubSNP, 28 Frequency, 5 ClinVar submissions
No Submitter Submission ID Date (Build)
1 WIAF-CSNP ss7802 Sep 19, 2000 (52)
2 TSC-CSHL ss2123222 Oct 23, 2000 (88)
3 SC_JCM ss4186210 Nov 05, 2001 (101)
4 SNP500CANCER ss6903813 Mar 31, 2003 (113)
5 SSAHASNP ss22300296 Apr 05, 2004 (121)
6 PERLEGEN ss24423132 Sep 20, 2004 (123)
7 SEQUENOM ss24811831 Sep 20, 2004 (123)
8 ABI ss44667256 Mar 13, 2006 (126)
9 CEPH ss46525814 Mar 13, 2006 (126)
10 ILLUMINA ss66622207 Nov 29, 2006 (127)
11 ILLUMINA ss67447673 Nov 29, 2006 (127)
12 ILLUMINA ss67798893 Nov 29, 2006 (127)
13 PERLEGEN ss68933694 May 16, 2007 (127)
14 SHGC ss70458148 May 17, 2007 (131)
15 ILLUMINA ss70860936 May 26, 2008 (130)
16 ILLUMINA ss71448209 May 16, 2007 (127)
17 AFFY ss74806562 Aug 16, 2007 (128)
18 ILLUMINA ss75464559 Dec 07, 2007 (129)
19 ILLUMINA ss79218156 Dec 16, 2007 (130)
20 KRIBB_YJKIM ss80753430 Dec 16, 2007 (130)
21 KRIBB_YJKIM ss83347099 Dec 16, 2007 (130)
22 HGSV ss85592043 Dec 16, 2007 (130)
23 CANCER-GENOME ss86342955 Mar 23, 2008 (129)
24 BCMHGSC_JDW ss93077289 Mar 24, 2008 (129)
25 HUMANGENOME_JCVI ss98716774 Feb 06, 2009 (130)
26 1000GENOMES ss108997372 Jan 23, 2009 (130)
27 ILLUMINA ss122524443 Dec 01, 2009 (131)
28 ILLUMINA ss154355917 Dec 01, 2009 (131)
29 GMI ss155360266 Dec 01, 2009 (131)
30 ILLUMINA ss159532184 Dec 01, 2009 (131)
31 SEATTLESEQ ss159709342 Dec 01, 2009 (131)
32 ILLUMINA ss160768772 Dec 01, 2009 (131)
33 COMPLETE_GENOMICS ss162212427 Jul 04, 2010 (132)
34 ILLUMINA ss172109042 Jul 04, 2010 (132)
35 ILLUMINA ss173989569 Jul 04, 2010 (132)
36 BUSHMAN ss200172740 Jul 04, 2010 (132)
37 BCM-HGSC-SUB ss206986384 Jul 04, 2010 (132)
38 1000GENOMES ss211623024 Jul 14, 2010 (132)
39 1000GENOMES ss221649904 Jul 14, 2010 (132)
40 1000GENOMES ss232922929 Jul 14, 2010 (132)
41 1000GENOMES ss240101595 Jul 15, 2010 (132)
42 OMICIA ss244238442 May 27, 2010 (132)
43 ILLUMINA ss244304578 Jul 04, 2010 (132)
44 BL ss253407594 May 09, 2011 (134)
45 OMIM-CURATED-RECORDS ss263194107 Oct 28, 2010 (133)
46 GMI ss278263180 May 04, 2012 (137)
47 PJP ss293577040 May 09, 2011 (134)
48 NHLBI-ESP ss342180685 May 09, 2011 (134)
49 ILLUMINA ss481226059 May 04, 2012 (137)
50 ILLUMINA ss481249562 May 04, 2012 (137)
51 ILLUMINA ss482236081 Sep 08, 2015 (146)
52 ILLUMINA ss485408323 May 04, 2012 (137)
53 1000GENOMES ss490902956 May 04, 2012 (137)
54 EXOME_CHIP ss491366180 May 04, 2012 (137)
55 CLINSEQ_SNP ss491866637 May 04, 2012 (137)
56 ILLUMINA ss532796572 Sep 08, 2015 (146)
57 TISHKOFF ss558356282 Apr 25, 2013 (138)
58 SSMP ss652212044 Apr 25, 2013 (138)
59 ILLUMINA ss778566390 Sep 08, 2015 (146)
60 ILLUMINA ss780836731 Aug 21, 2014 (142)
61 ILLUMINA ss783149637 Sep 08, 2015 (146)
62 ILLUMINA ss783519871 Aug 21, 2014 (142)
63 ILLUMINA ss784105642 Sep 08, 2015 (146)
64 ILLUMINA ss825548674 Apr 01, 2015 (144)
65 ILLUMINA ss832408821 Sep 08, 2015 (146)
66 ILLUMINA ss833043425 Jul 13, 2019 (153)
67 ILLUMINA ss834023361 Sep 08, 2015 (146)
68 JMKIDD_LAB ss974455646 Aug 21, 2014 (142)
69 EVA-GONL ss981495853 Aug 21, 2014 (142)
70 JMKIDD_LAB ss1067467930 Aug 21, 2014 (142)
71 JMKIDD_LAB ss1072581269 Aug 21, 2014 (142)
72 1000GENOMES ss1314832217 Aug 21, 2014 (142)
73 HAMMER_LAB ss1397411573 Sep 08, 2015 (146)
74 DDI ss1430322527 Apr 01, 2015 (144)
75 EVA_GENOME_DK ss1581113086 Apr 01, 2015 (144)
76 EVA_FINRISK ss1584038609 Apr 01, 2015 (144)
77 EVA_DECODE ss1591019854 Apr 01, 2015 (144)
78 EVA_UK10K_ALSPAC ss1612755297 Apr 01, 2015 (144)
79 EVA_UK10K_TWINSUK ss1655749330 Apr 01, 2015 (144)
80 EVA_EXAC ss1687801668 Apr 01, 2015 (144)
81 EVA_MGP ss1711085653 Apr 01, 2015 (144)
82 EVA_SVP ss1712760418 Apr 01, 2015 (144)
83 ILLUMINA ss1752575867 Sep 08, 2015 (146)
84 ILLUMINA ss1752575868 Sep 08, 2015 (146)
85 HAMMER_LAB ss1803429994 Sep 08, 2015 (146)
86 ILLUMINA ss1917789538 Feb 12, 2016 (147)
87 WEILL_CORNELL_DGM ss1924758473 Feb 12, 2016 (147)
88 ILLUMINA ss1946143119 Feb 12, 2016 (147)
89 ILLUMINA ss1946143120 Feb 12, 2016 (147)
90 ILLUMINA ss1958783966 Feb 12, 2016 (147)
91 ILLUMINA ss1958783967 Feb 12, 2016 (147)
92 GENOMED ss1970075318 Jul 19, 2016 (147)
93 JJLAB ss2022982783 Sep 14, 2016 (149)
94 ILLUMINA ss2094818178 Dec 20, 2016 (150)
95 ILLUMINA ss2095156217 Dec 20, 2016 (150)
96 USC_VALOUEV ss2151133865 Dec 20, 2016 (150)
97 HUMAN_LONGEVITY ss2273257992 Dec 20, 2016 (150)
98 SYSTEMSBIOZJU ss2625990786 Nov 08, 2017 (151)
99 ILLUMINA ss2634273302 Nov 08, 2017 (151)
100 ILLUMINA ss2635143198 Nov 08, 2017 (151)
101 GRF ss2706672662 Nov 08, 2017 (151)
102 ILLUMINA ss2711035058 Nov 08, 2017 (151)
103 GNOMAD ss2734986558 Nov 08, 2017 (151)
104 GNOMAD ss2747380779 Nov 08, 2017 (151)
105 GNOMAD ss2823792300 Nov 08, 2017 (151)
106 AFFY ss2985320498 Nov 08, 2017 (151)
107 AFFY ss2985951150 Nov 08, 2017 (151)
108 SWEGEN ss2996814618 Nov 08, 2017 (151)
109 ILLUMINA ss3022484974 Nov 08, 2017 (151)
110 ILLUMINA ss3022484975 Nov 08, 2017 (151)
111 EVA_SAMSUNG_MC ss3023061149 Nov 08, 2017 (151)
112 BIOINF_KMB_FNS_UNIBA ss3025276681 Nov 08, 2017 (151)
113 CSHL ss3346357157 Nov 08, 2017 (151)
114 ILLUMINA ss3625871517 Oct 12, 2018 (152)
115 ILLUMINA ss3629224557 Oct 12, 2018 (152)
116 ILLUMINA ss3629224558 Oct 12, 2018 (152)
117 ILLUMINA ss3632200765 Oct 12, 2018 (152)
118 ILLUMINA ss3633372646 Oct 12, 2018 (152)
119 ILLUMINA ss3634093167 Oct 12, 2018 (152)
120 ILLUMINA ss3634999949 Oct 12, 2018 (152)
121 ILLUMINA ss3634999950 Oct 12, 2018 (152)
122 ILLUMINA ss3635775237 Oct 12, 2018 (152)
123 ILLUMINA ss3636710499 Oct 12, 2018 (152)
124 ILLUMINA ss3637527837 Oct 12, 2018 (152)
125 ILLUMINA ss3638550575 Oct 12, 2018 (152)
126 ILLUMINA ss3639278041 Oct 12, 2018 (152)
127 ILLUMINA ss3639662073 Oct 12, 2018 (152)
128 ILLUMINA ss3640707242 Oct 12, 2018 (152)
129 ILLUMINA ss3640707243 Oct 12, 2018 (152)
130 ILLUMINA ss3643496787 Oct 12, 2018 (152)
131 ILLUMINA ss3644876048 Oct 12, 2018 (152)
132 ILLUMINA ss3644876049 Oct 12, 2018 (152)
133 OMUKHERJEE_ADBS ss3646318813 Oct 12, 2018 (152)
134 URBANLAB ss3648042334 Oct 12, 2018 (152)
135 ILLUMINA ss3652980420 Oct 12, 2018 (152)
136 ILLUMINA ss3652980421 Oct 12, 2018 (152)
137 ILLUMINA ss3654093765 Oct 12, 2018 (152)
138 EGCUT_WGS ss3664712385 Jul 13, 2019 (153)
139 EVA_DECODE ss3714558592 Jul 13, 2019 (153)
140 ILLUMINA ss3726229556 Jul 13, 2019 (153)
141 ACPOP ss3732299156 Jul 13, 2019 (153)
142 ILLUMINA ss3744252126 Jul 13, 2019 (153)
143 ILLUMINA ss3744535042 Jul 13, 2019 (153)
144 ILLUMINA ss3745300134 Jul 13, 2019 (153)
145 ILLUMINA ss3745300135 Jul 13, 2019 (153)
146 EVA ss3763352349 Jul 13, 2019 (153)
147 PAGE_CC ss3771199356 Jul 13, 2019 (153)
148 ILLUMINA ss3772794380 Jul 13, 2019 (153)
149 ILLUMINA ss3772794381 Jul 13, 2019 (153)
150 PACBIO ss3785094374 Jul 13, 2019 (153)
151 PACBIO ss3790503261 Jul 13, 2019 (153)
152 PACBIO ss3795379725 Jul 13, 2019 (153)
153 KHV_HUMAN_GENOMES ss3806527627 Jul 13, 2019 (153)
154 EVA ss3824081033 Apr 26, 2020 (154)
155 EVA ss3825522403 Apr 26, 2020 (154)
156 EVA ss3825538585 Apr 26, 2020 (154)
157 EVA ss3825672364 Apr 26, 2020 (154)
158 EVA ss3829216229 Apr 26, 2020 (154)
159 EVA ss3838078117 Apr 26, 2020 (154)
160 EVA ss3843517631 Apr 26, 2020 (154)
161 HGDP ss3847788948 Apr 26, 2020 (154)
162 SGDP_PRJ ss3861714090 Apr 26, 2020 (154)
163 KRGDB ss3908196831 Apr 26, 2020 (154)
164 KOGIC ss3956516443 Apr 26, 2020 (154)
165 FSA-LAB ss3984305360 Apr 26, 2021 (155)
166 FSA-LAB ss3984305361 Apr 26, 2021 (155)
167 EVA ss3985138027 Apr 26, 2021 (155)
168 EVA ss3986030279 Apr 26, 2021 (155)
169 EVA ss3986306352 Apr 26, 2021 (155)
170 EVA ss4017204141 Apr 26, 2021 (155)
171 TOPMED ss4657580707 Apr 26, 2021 (155)
172 TOMMO_GENOMICS ss5171426355 Apr 26, 2021 (155)
173 EVA ss5237012441 Apr 26, 2021 (155)
174 EVA ss5237185506 Apr 26, 2021 (155)
175 EVA ss5237643539 Oct 13, 2022 (156)
176 1000G_HIGH_COVERAGE ss5263704474 Oct 13, 2022 (156)
177 TRAN_CS_UWATERLOO ss5314412605 Oct 13, 2022 (156)
178 EVA ss5315048432 Oct 13, 2022 (156)
179 EVA ss5357137659 Oct 13, 2022 (156)
180 HUGCELL_USP ss5461954851 Oct 13, 2022 (156)
181 EVA ss5507999336 Oct 13, 2022 (156)
182 1000G_HIGH_COVERAGE ss5547196930 Oct 13, 2022 (156)
183 EVA ss5623931931 Oct 13, 2022 (156)
184 EVA ss5624146691 Oct 13, 2022 (156)
185 SANFORD_IMAGENETICS ss5624587958 Oct 13, 2022 (156)
186 SANFORD_IMAGENETICS ss5637670529 Oct 13, 2022 (156)
187 TOMMO_GENOMICS ss5707387377 Oct 13, 2022 (156)
188 EVA ss5800053959 Oct 13, 2022 (156)
189 EVA ss5800121232 Oct 13, 2022 (156)
190 YY_MCH ss5806227807 Oct 13, 2022 (156)
191 EVA ss5834841459 Oct 13, 2022 (156)
192 EVA ss5848047912 Oct 13, 2022 (156)
193 EVA ss5848626080 Oct 13, 2022 (156)
194 EVA ss5854787693 Oct 13, 2022 (156)
195 EVA ss5893922286 Oct 13, 2022 (156)
196 EVA ss5936526986 Oct 13, 2022 (156)
197 EVA ss5966091894 Oct 13, 2022 (156)
198 EVA ss5980291314 Oct 13, 2022 (156)
199 1000Genomes NC_000005.9 - 42719239 Oct 12, 2018 (152)
200 1000Genomes_30x NC_000005.10 - 42719137 Oct 13, 2022 (156)
201 The Avon Longitudinal Study of Parents and Children NC_000005.9 - 42719239 Oct 12, 2018 (152)
202 Genome-wide autozygosity in Daghestan NC_000005.8 - 42754996 Apr 26, 2020 (154)
203 Genetic variation in the Estonian population NC_000005.9 - 42719239 Oct 12, 2018 (152)
204 ExAC NC_000005.9 - 42719239 Oct 12, 2018 (152)
205 FINRISK NC_000005.9 - 42719239 Apr 26, 2020 (154)
206 The Danish reference pan genome NC_000005.9 - 42719239 Apr 26, 2020 (154)
207 gnomAD - Genomes NC_000005.10 - 42719137 Apr 26, 2021 (155)
208 gnomAD - Exomes NC_000005.9 - 42719239 Jul 13, 2019 (153)
209 Genome of the Netherlands Release 5 NC_000005.9 - 42719239 Apr 26, 2020 (154)
210 HGDP-CEPH-db Supplement 1 NC_000005.8 - 42754996 Apr 26, 2020 (154)
211 HapMap NC_000005.10 - 42719137 Apr 26, 2020 (154)
212 KOREAN population from KRGDB NC_000005.9 - 42719239 Apr 26, 2020 (154)
213 Korean Genome Project NC_000005.10 - 42719137 Apr 26, 2020 (154)
214 Medical Genome Project healthy controls from Spanish population NC_000005.9 - 42719239 Apr 26, 2020 (154)
215 Northern Sweden NC_000005.9 - 42719239 Jul 13, 2019 (153)
216 The PAGE Study NC_000005.10 - 42719137 Jul 13, 2019 (153)
217 Ancient Sardinia genome-wide 1240k capture data generation and analysis NC_000005.9 - 42719239 Apr 26, 2021 (155)
218 Qatari NC_000005.9 - 42719239 Apr 26, 2020 (154)
219 SGDP_PRJ NC_000005.9 - 42719239 Apr 26, 2020 (154)
220 Siberian NC_000005.9 - 42719239 Apr 26, 2020 (154)
221 8.3KJPN NC_000005.9 - 42719239 Apr 26, 2021 (155)
222 14KJPN NC_000005.10 - 42719137 Oct 13, 2022 (156)
223 TopMed NC_000005.10 - 42719137 Apr 26, 2021 (155)
224 UK 10K study - Twins NC_000005.9 - 42719239 Oct 12, 2018 (152)
225 A Vietnamese Genetic Variation Database NC_000005.9 - 42719239 Jul 13, 2019 (153)
226 ALFA NC_000005.10 - 42719137 Apr 26, 2021 (155)
227 ClinVar RCV000009190.8 Oct 13, 2022 (156)
228 ClinVar RCV000173652.7 Oct 13, 2022 (156)
229 ClinVar RCV000392579.5 Oct 13, 2022 (156)
230 ClinVar RCV001701562.2 Oct 13, 2022 (156)
231 ClinVar RCV001719693.4 Oct 13, 2022 (156)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs17231187 Oct 08, 2004 (123)
rs45523734 Dec 02, 2009 (131)
rs52796340 Sep 21, 2007 (128)
rs61155939 May 26, 2008 (130)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
386632, 466840, ss85592043, ss93077289, ss108997372, ss162212427, ss200172740, ss206986384, ss211623024, ss253407594, ss278263180, ss293577040, ss481226059, ss491866637, ss825548674, ss1397411573, ss1591019854, ss1712760418, ss2635143198, ss3639278041, ss3639662073, ss3643496787, ss3847788948 NC_000005.8:42754995:A:C NC_000005.10:42719136:A:C (self)
26423195, 14695021, 10450633, 7791678, 35070, 7278025, 4105044, 6530679, 15374225, 201413, 5584021, 363954, 6800403, 13731070, 3650219, 29395662, 14695021, 3267010, ss221649904, ss232922929, ss240101595, ss342180685, ss481249562, ss482236081, ss485408323, ss490902956, ss491366180, ss532796572, ss558356282, ss652212044, ss778566390, ss780836731, ss783149637, ss783519871, ss784105642, ss832408821, ss833043425, ss834023361, ss974455646, ss981495853, ss1067467930, ss1072581269, ss1314832217, ss1430322527, ss1581113086, ss1584038609, ss1612755297, ss1655749330, ss1687801668, ss1711085653, ss1752575867, ss1752575868, ss1803429994, ss1917789538, ss1924758473, ss1946143119, ss1946143120, ss1958783966, ss1958783967, ss1970075318, ss2022982783, ss2094818178, ss2095156217, ss2151133865, ss2625990786, ss2634273302, ss2706672662, ss2711035058, ss2734986558, ss2747380779, ss2823792300, ss2985320498, ss2985951150, ss2996814618, ss3022484974, ss3022484975, ss3023061149, ss3346357157, ss3625871517, ss3629224557, ss3629224558, ss3632200765, ss3633372646, ss3634093167, ss3634999949, ss3634999950, ss3635775237, ss3636710499, ss3637527837, ss3638550575, ss3640707242, ss3640707243, ss3644876048, ss3644876049, ss3646318813, ss3652980420, ss3652980421, ss3654093765, ss3664712385, ss3732299156, ss3744252126, ss3744535042, ss3745300134, ss3745300135, ss3763352349, ss3772794380, ss3772794381, ss3785094374, ss3790503261, ss3795379725, ss3824081033, ss3825522403, ss3825538585, ss3825672364, ss3829216229, ss3838078117, ss3861714090, ss3908196831, ss3984305360, ss3984305361, ss3985138027, ss3986030279, ss3986306352, ss4017204141, ss5171426355, ss5315048432, ss5357137659, ss5507999336, ss5623931931, ss5624146691, ss5624587958, ss5637670529, ss5800053959, ss5800121232, ss5834841459, ss5848047912, ss5848626080, ss5936526986, ss5966091894, ss5980291314 NC_000005.9:42719238:A:C NC_000005.10:42719136:A:C (self)
RCV000009190.8, RCV000173652.7, RCV000392579.5, RCV001701562.2, RCV001719693.4, 34722865, 186639791, 2856392, 12894444, 420825, 41224481, 494958264, 12276584708, ss244238442, ss263194107, ss2273257992, ss3025276681, ss3648042334, ss3714558592, ss3726229556, ss3771199356, ss3806527627, ss3843517631, ss3956516443, ss4657580707, ss5237012441, ss5237185506, ss5237643539, ss5263704474, ss5314412605, ss5461954851, ss5547196930, ss5707387377, ss5806227807, ss5854787693, ss5893922286 NC_000005.10:42719136:A:C NC_000005.10:42719136:A:C (self)
ss22300296 NT_006576.14:25171344:A:C NC_000005.10:42719136:A:C (self)
ss7802, ss2123222, ss4186210, ss6903813, ss24423132, ss24811831, ss44667256, ss46525814, ss66622207, ss67447673, ss67798893, ss68933694, ss70458148, ss70860936, ss71448209, ss74806562, ss75464559, ss79218156, ss80753430, ss83347099, ss86342955, ss98716774, ss122524443, ss154355917, ss155360266, ss159532184, ss159709342, ss160768772, ss172109042, ss173989569, ss244304578 NT_006576.16:42709238:A:C NC_000005.10:42719136:A:C (self)
15374225, ss3908196831 NC_000005.9:42719238:A:G NC_000005.10:42719136:A:G (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

13 citations for rs6180
PMID Title Author Year Journal
12910492 Growth hormone receptor variant (L526I) modifies plasma HDL cholesterol phenotype in familial hypercholesterolemia: intra-familial association study in an eight-generation hyperlipidemic kindred. Takada D et al. 2003 American journal of medical genetics. Part A
20445798 Chromosome 5p Region SNPs Are Associated with Risk of NSCLC among Women. Van Dyke AL et al. 2009 Journal of cancer epidemiology
21194676 Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height. Lanktree MB et al. 2011 American journal of human genetics
22695700 The genetic epidemiology of idiopathic scoliosis. Gorman KF et al. 2012 European spine journal
23820649 Where genotype is not predictive of phenotype: towards an understanding of the molecular basis of reduced penetrance in human inherited disease. Cooper DN et al. 2013 Human genetics
24086368 An epistatic interaction between the PAX8 and STK17B genes in papillary thyroid cancer susceptibility. Landa I et al. 2013 PloS one
24664892 The E180splice mutation in the GHR gene causing Laron syndrome: witness of a Sephardic Jewish exodus from the Iberian Peninsula to the New World? Gonçalves FT et al. 2014 American journal of medical genetics. Part A
25741868 Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Richards S et al. 2015 Genetics in medicine
28415752 Correlation between facial morphology and gene polymorphisms in the Uygur youth population. He H et al. 2017 Oncotarget
29059297 Association analysis between rs6184 and rs6180 polymorphisms of growth hormone receptor gene regarding skeletal-facial profile in a Colombian population. Tobón-Arroyave SI et al. 2018 European journal of orthodontics
31198387 Assessment of Correlation of Growth Hormone Receptor Gene with Tooth Dimensions: A CBCT and Genotyping Study. Shinde GR et al. 2019 Journal of pharmacy & bioallied sciences
31884074 Circulating Levels of Insulin-like Growth Factor 1 and Insulin-like Growth Factor Binding Protein 3 Associate With Risk of Colorectal Cancer Based on Serologic and Mendelian Randomization Analyses. Murphy N et al. 2020 Gastroenterology
34863024 Genetic effect of single nucleotide polymorphisms in growth hormone receptor gene on the risk of non-syndromic mandibular prognathism in the Korean population. Park HJ et al. 2022 Orthodontics & craniofacial research
Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post820+afb47a3d