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PRG4 proteoglycan 4 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100482371, updated on 8-Mar-2024

Summary

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Gene symbol
PRG4
Gene description
proteoglycan 4
Locus tag
PANDA_014295
See related
Ensembl:ENSAMEG00000015402
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See PRG4 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 8 NC_048225.1 (83688431..83723103, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218145.1 (124836..140695)

Chromosome 8 - NC_048225.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105240029 Neighboring gene phosducin Neighboring gene odr-4 GPCR localization factor homolog Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene uncharacterized LOC117803422 Neighboring gene hemicentin 1 Neighboring gene uncharacterized LOC117803535 Neighboring gene influenza virus NS1A binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048225.1 Reference ASM200744v2 Primary Assembly

    Range
    83688431..83723103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034666793.1 → XP_034522684.1  proteoglycan 4

    UniProtKB/TrEMBL
    D2HQU3
    Related
    ENSAMEP00000016259.2, ENSAMET00000016933.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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