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PES1 pescadillo ribosomal biogenesis factor 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101371089, updated on 8-Mar-2024

Summary

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Gene symbol
PES1
Gene description
pescadillo ribosomal biogenesis factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See PES1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450372.1 (1406983..1422649)

NW_004450372.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member E4 Neighboring gene transcobalamin 2 Neighboring gene galactose-3-O-sulfotransferase 1 Neighboring gene SEC14 like lipid binding 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450372.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PeBoW complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pescadillo homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450372.1 Reference Oros_1.0 Primary Assembly

    Range
    1406983..1422649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004400037.1 → XP_004400094.1  pescadillo homolog isoform X1

    UniProtKB/TrEMBL
    A0A2U3VXD0
    Conserved Domains (3) summary
    COG5163
    Location:6 → 583
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
    pfam06732
    Location:9 → 278
    Pescadillo_N; Pescadillo N-terminus
    pfam16589
    Location:327 → 413
    BRCT_2; BRCT domain, a BRCA1 C-terminus domain

  2. XM_004400038.1 → XP_004400095.1  pescadillo homolog isoform X2

    UniProtKB/TrEMBL
    A0A2U3VXB7
    Conserved Domains (3) summary
    COG5163
    Location:6 → 578
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
    pfam06732
    Location:9 → 278
    Pescadillo_N; Pescadillo N-terminus
    pfam16589
    Location:322 → 408
    BRCT_2; BRCT domain, a BRCA1 C-terminus domain
Nucleotide Protein
Heading Accession and Version

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