U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PRG4 proteoglycan 4 [ Cercocebus atys (sooty mangabey) ]

Gene ID: 105579924, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PRG4
Gene description
proteoglycan 4
See related
Ensembl:ENSCATG00000031270
Gene type
protein coding
RefSeq status
MODEL
Organism
Cercocebus atys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Cercocebus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PRG4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Caty_1.0 (GCF_000955945.1) Unplaced Scaffold NW_012000140.1 (2532086..2549884, complement)

NW_012000140.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105579918 Neighboring gene phosducin Neighboring gene odr-4 GPCR localization factor homolog Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene hemicentin 1 Neighboring gene influenza virus NS1A binding protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_012000140.1 Unplaced Scaffold Reference Caty_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
proteoglycan 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cercocebus atys Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caty_1.0

Genomic

  1. NW_012000140.1 Reference Caty_1.0

    Range
    2532086..2549884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012047247.1 → XP_011902637.1  proteoglycan 4 isoform X4

    UniProtKB/TrEMBL
    A0A2K5LNC0
    Conserved Domains (3) summary
    smart00201
    Location:25 → 67
    SO; Somatomedin B -like domains
    cd00094
    Location:1049 → 1309
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam17061
    Location:207 → 425
    PARM; PARM

  2. XM_012047222.1 → XP_011902612.1  proteoglycan 4 isoform X1

    UniProtKB/TrEMBL
    A0A2K5LNC0, A0A2K5LNE5
    Related
    ENSCATP00000014467.1, ENSCATT00000038614.1
    Conserved Domains (3) summary
    smart00201
    Location:72 → 113
    SO; Somatomedin B -like domains
    cd00094
    Location:1095 → 1355
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam17061
    Location:253 → 471
    PARM; PARM

  3. XM_012047296.1 → XP_011902686.1  proteoglycan 4 isoform X10

    UniProtKB/TrEMBL
    A0A2K5LNC0
    Conserved Domains (3) summary
    smart00201
    Location:25 → 65
    SO; Somatomedin B -like domains
    cd00094
    Location:956 → 1216
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam17061
    Location:114 → 332
    PARM; PARM

  4. XM_012047252.1 → XP_011902642.1  proteoglycan 4 isoform X5

    UniProtKB/TrEMBL
    A0A2K5LNC0
    Conserved Domains (3) summary
    smart00201
    Location:67 → 108
    SO; Somatomedin B -like domains
    cd00094
    Location:1047 → 1307
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam17061
    Location:205 → 423
    PARM; PARM

  5. XM_012047229.1 → XP_011902619.1  proteoglycan 4 isoform X2

    UniProtKB/TrEMBL
    A0A2K5LNC0, A0A2K5LNE8
    Related
    ENSCATP00000014476.1, ENSCATT00000038623.1
    Conserved Domains (3) summary
    smart00201
    Location:67 → 108
    SO; Somatomedin B -like domains
    cd00094
    Location:1090 → 1350
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam17061
    Location:248 → 466
    PARM; PARM

  6. XM_012047269.1 → XP_011902659.1  proteoglycan 4 isoform X7

    UniProtKB/TrEMBL
    A0A2K5LNC0
    Conserved Domains (3) summary
    smart00201
    Location:72 → 111
    SO; Somatomedin B -like domains
    cd00094
    Location:1002 → 1262
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam17061
    Location:160 → 378
    PARM; PARM

  7. XM_012047240.1 → XP_011902630.1  proteoglycan 4 isoform X3

    UniProtKB/TrEMBL
    A0A2K5LNC0
    Conserved Domains (3) summary
    smart00201
    Location:72 → 113
    SO; Somatomedin B -like domains
    cd00094
    Location:1052 → 1312
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam17061
    Location:210 → 428
    PARM; PARM

  8. XM_012047285.1 → XP_011902675.1  proteoglycan 4 isoform X9

    UniProtKB/TrEMBL
    A0A2K5LNC0
    Conserved Domains (2) summary
    smart00201
    Location:72 → 113
    SO; Somatomedin B -like domains
    cd00094
    Location:991 → 1251
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...

  9. XM_012047261.1 → XP_011902651.1  proteoglycan 4 isoform X6

    UniProtKB/TrEMBL
    A0A2K5LNC0
    Conserved Domains (2) summary
    smart00201
    Location:72 → 113
    SO; Somatomedin B -like domains
    cd00094
    Location:1039 → 1299
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...

  10. XM_012047276.1 → XP_011902666.1  proteoglycan 4 isoform X8

    UniProtKB/TrEMBL
    A0A2K5LNC0
    Conserved Domains (3) summary
    smart00201
    Location:67 → 106
    SO; Somatomedin B -like domains
    cd00094
    Location:997 → 1257
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam17061
    Location:155 → 373
    PARM; PARM
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.