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Prg4 proteoglycan 4 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107147295, updated on 1-Aug-2024

Summary

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Gene symbol
Prg4
Gene description
proteoglycan 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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See Prg4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_026000019.1 (8437602..8454240, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351239.1 (8437598..8453671, complement)

NW_026000019.1Genomic Context describing neighboring genes Neighboring gene phosducin Neighboring gene odr-4 GPCR localization factor homolog Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene U6 spliceosomal RNA Neighboring gene putative glutathione-specific gamma-glutamylcyclotransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_026000019.1 Reference marMar

    Range
    8437602..8454240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015491690.2 → XP_015347176.1  proteoglycan 4 isoform X1

    UniProtKB/TrEMBL
    A0AAJ7F0Z4
    Conserved Domains (2) summary
    smart00201
    Location:67 → 108
    SO; Somatomedin B -like domains
    cd00094
    Location:623 → 883
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...

  2. XM_015491692.2 → XP_015347178.1  proteoglycan 4 isoform X3

    UniProtKB/TrEMBL
    A0AAJ7F107
    Conserved Domains (3) summary
    smart00201
    Location:26 → 68
    SO; Somatomedin B -like domains
    cd00094
    Location:533 → 793
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam10310
    Location:207 → 300
    DUF2413; Protein of unknown function (DUF2413)

  3. XM_048809825.1 → XP_048665782.1  proteoglycan 4 isoform X2

    UniProtKB/TrEMBL
    A0AAJ8DDK6

  4. XM_048809826.1 → XP_048665783.1  proteoglycan 4 isoform X4

    UniProtKB/TrEMBL
    A0AAJ8DDL3
Nucleotide Protein
Heading Accession and Version

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