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PES1 pescadillo ribosomal biogenesis factor 1 [ Microcaecilia unicolor ]

Gene ID: 115481233, updated on 17-Mar-2024

Summary

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Gene symbol
PES1
Gene description
pescadillo ribosomal biogenesis factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See PES1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
18
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 11 NC_044041.1 (15812453..15902166, complement)

Chromosome 11 - NC_044041.1Genomic Context describing neighboring genes Neighboring gene zona pellucida sperm-binding protein 3-like Neighboring gene galactose-3-O-sulfotransferase 1 Neighboring gene DNA polymerase epsilon, catalytic subunit Neighboring gene purinergic receptor P2X 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044041.1 Chromosome 11 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PeBoW complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: pescadillo homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044041.1 Reference aMicUni1.1 Primary Assembly

    Range
    15812453..15902166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030220341.1 → XP_030076201.1  LOW QUALITY PROTEIN: pescadillo homolog

    UniProtKB/TrEMBL
    A0A6P7ZL09
    Conserved Domains (3) summary
    COG5163
    Location:174 → 742
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
    pfam04117
    Location:128 → 172
    Mpv17_PMP22; Mpv17 / PMP22 family
    pfam06732
    Location:172 → 441
    Pescadillo_N; Pescadillo N-terminus
Nucleotide Protein
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