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PES1 pescadillo ribosomal biogenesis factor 1 [ Molothrus ater ]

Gene ID: 118693188, updated on 3-Aug-2024

Summary

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Gene symbol
PES1
Gene description
pescadillo ribosomal biogenesis factor 1
See related
EnsemblRapid:ENSMRTG00000006121
Gene type
protein coding
RefSeq status
MODEL
Organism
Molothrus ater
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Icteridae; Molothrus
Orthologs
human mouse all
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Genomic context

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See PES1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current BPBGC_Mater_1.1 (GCF_012460135.2) 18 NC_050495.2 (12998802..13006532, complement)
100 previous assembly BPBGC_Mater_1.0 (GCF_012460135.1) 15 NC_050492.1 (13001001..13008724, complement)

Chromosome 18 - NC_050495.2Genomic Context describing neighboring genes Neighboring gene mitochondrial fission process 1 Neighboring gene galactose-3-O-sulfotransferase 1 Neighboring gene transcobalamin 2 Neighboring gene solute carrier family 35 member E4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PeBoW complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pescadillo homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_012460135.2-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BPBGC_Mater_1.1 Primary Assembly

Genomic

  1. NC_050495.2 Reference BPBGC_Mater_1.1 Primary Assembly

    Range
    12998802..13006532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036393561.2 → XP_036249454.1  pescadillo homolog

    UniProtKB/TrEMBL
    A0A7L3VLT1
    Related
    ENSMRTP00000008640.1
    Conserved Domains (2) summary
    COG5163
    Location:6 → 572
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
    pfam06732
    Location:9 → 279
    Pescadillo_N; Pescadillo N-terminus
Nucleotide Protein
Heading Accession and Version

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