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PRG4 proteoglycan 4 [ Manis pentadactyla (Chinese pangolin) ]

Gene ID: 118926059, updated on 20-Mar-2024

Summary

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Gene symbol
PRG4
Gene description
proteoglycan 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis pentadactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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See PRG4 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_06 current mManPen7.hap1 (GCF_030020395.1) 9 NC_080027.1 (113651690..113668347)
100 previous assembly YNU_ManPten_2.0 (GCF_014570555.1) Unplaced Scaffold NW_023455298.1 (7023076..7039600, complement)

Chromosome 9 - NC_080027.1Genomic Context describing neighboring genes Neighboring gene hemicentin 1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC118926061 Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene uncharacterized LOC118926098 Neighboring gene odr-4 GPCR localization factor homolog Neighboring gene phosducin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030020395.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mManPen7.hap1

Genomic

  1. NC_080027.1 Reference mManPen7.hap1

    Range
    113651690..113668347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057507953.1 → XP_057363936.1  proteoglycan 4 isoform X1

  2. XM_057507956.1 → XP_057363939.1  proteoglycan 4 isoform X3

  3. XM_057507952.1 → XP_057363935.1  proteoglycan 4 isoform X1

  4. XM_057507955.1 → XP_057363938.1  proteoglycan 4 isoform X3

  5. XM_057507954.1 → XP_057363937.1  proteoglycan 4 isoform X2

  6. XM_057507958.1 → XP_057363941.1  proteoglycan 4 isoform X5

  7. XM_057507959.1 → XP_057363942.1  proteoglycan 4 isoform X6

  8. XM_057507957.1 → XP_057363940.1  proteoglycan 4 isoform X4

  9. XM_057507960.1 → XP_057363943.1  proteoglycan 4 isoform X7

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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