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PES1 pescadillo ribosomal biogenesis factor 1 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123032784, updated on 22-Mar-2024

Summary

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Gene symbol
PES1
Gene description
pescadillo ribosomal biogenesis factor 1
Locus tag
EYD10_14895
See related
Ensembl:ENSVKKG00000004308
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Orthologs
human mouse all
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Genomic context

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See PES1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025336169.1 (4816224..4861178, complement)

NW_025336169.1Genomic Context describing neighboring genes Neighboring gene zona pellucida sperm-binding protein 3-like Neighboring gene galactose-3-O-sulfotransferase 1 Neighboring gene transcobalamin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025336169 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PeBoW complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pescadillo homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025336169.1 Reference ASM479886v1

    Range
    4816224..4861178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044448897.1 → XP_044304832.1  pescadillo homolog isoform X1

    Conserved Domains (1) summary
    COG5163
    Location:6 → 597
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

  2. XM_044448900.1 → XP_044304835.1  pescadillo homolog isoform X4

    Related
    ENSVKKP00000005909.1, ENSVKKT00000006069.1
    Conserved Domains (1) summary
    COG5163
    Location:6 → 584
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

  3. XM_044448898.1 → XP_044304833.1  pescadillo homolog isoform X2

    Conserved Domains (1) summary
    COG5163
    Location:6 → 593
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

  4. XM_044448899.1 → XP_044304834.1  pescadillo homolog isoform X3

    Conserved Domains (1) summary
    COG5163
    Location:6 → 592
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

RNA

  1. XR_006416540.1 RNA Sequence

  2. XR_006416541.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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