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PRG4 proteoglycan 4 [ Melospiza melodia melodia ]

Gene ID: 134422942, updated on 3-Aug-2024

Summary

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Gene symbol
PRG4
Gene description
proteoglycan 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Melospiza melodia melodia (sub-species: melodia)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Melospiza
Orthologs
human mouse all
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Genomic context

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See PRG4 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current bMelMel2.pri (GCF_035770615.1) 11 NC_086204.1 (7482479..7499986, complement)

Chromosome 11 - NC_086204.1Genomic Context describing neighboring genes Neighboring gene phosducin Neighboring gene odr-4 GPCR localization factor homolog Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene hemicentin 1 Neighboring gene influenza virus NS1A binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_086204.1 Chromosome 11 Reference bMelMel2.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035770615.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bMelMel2.pri

Genomic

  1. NC_086204.1 Reference bMelMel2.pri

    Range
    7482479..7499986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063165447.1 → XP_063021517.1  proteoglycan 4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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