zPicture :: dynamic blastz alignment visualization



		Dcode.org



		ECR Browser



		ECRBase



		Mulan



		zPicture



		DiRE



		SynoR



		rVista 2.0



		multiTF



		Array2BIO



		eShadow

Instructions

Example: human-rat-fugu and human-rat GATA3 alignment

Description

zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites.

Genome Research, 14(3), 472-477, (2004)

multi-zPicture: multiple sequence alignment tool

SEQUENCE 1

Upload sequence and gene annotation from UCSC Genome Browser
- or -
Paste sequence (in FASTA format )
- or -
FASTA file (.fa)
- or -
NCBI accession #

SEQUENCE 2

Upload sequence and gene annotation from UCSC Genome Browser
- or -
Paste sequence (in FASTA format )
- or -
FASTA file (.fa)
- or -
NCBI accession #

OPTIONAL :: ANNOTATION 1

Repeats:
	Repeats are identified by lower-case letters
	Mask repetitive elements
Gene annotation (if any):
Paste
File

OPTIONAL :: ANNOTATION 2

Repeats:
	Repeats are identified by lower-case letters
	Mask repetitive elements
Gene annotation (if any):
Paste
File

Select to run "fast" BlastZ on microbial-size genomes

Select to perform "chained" (global) blastz alignment


	Return to previously submitted request

Obtain a copy of zPicture software

NCBI DCODE.org Comparative Genomics Developments