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2020 – today
- 2022
[j16]Michael J. Cormier, Brent S. Pedersen, Pinar Bayrak-Toydemir, Aaron R. Quinlan:
Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies. BMC Bioinform. 23(1): 482 (2022)- [j15]Hao Hou, Brent S. Pedersen, Aaron R. Quinlan
:
Author Correction: Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools. Nat. Comput. Sci. 2(2): 132 (2022) - [j14]Erik Garrison, Zev N. Kronenberg, Eric T. Dawson, Brent S. Pedersen, Pjotr Prins:
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar. PLoS Comput. Biol. 18(5) (2022) - 2021
- [j13]Jonathan R. Belyeu, Thomas A. Sasani, Brent S. Pedersen, Aaron R. Quinlan:
Unfazed: parent-of-origin detection for large and small de novo variants. Bioinform. 37(24): 4860-4861 (2021) - [j12]Hao Hou, Brent S. Pedersen, Aaron R. Quinlan:
Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools. Nat. Comput. Sci. 1(6): 441-447 (2021)
2010 – 2019
- 2018
- [j11]Brent S. Pedersen, Aaron R. Quinlan:
Mosdepth: quick coverage calculation for genomes and exomes. Bioinform. 34(5): 867-868 (2018) - [j10]Brent S. Pedersen, Aaron R. Quinlan:
hts-nim: scripting high-performance genomic analyses. Bioinform. 34(19): 3387-3389 (2018) - 2017
- [j9]Brent S. Pedersen, Aaron R. Quinlan:
cyvcf2: fast, flexible variant analysis with Python. Bioinform. 33(12): 1867-1869 (2017) - [j8]R. Daniel Kortschak, Brent S. Pedersen, David L. Adelson:
bíogo/hts: high throughput sequence handling for the Go language. J. Open Source Softw. 2(10): 168 (2017) - 2015
- [i1]Matthew D. Shirley, Zhaorong Ma, Brent S. Pedersen, Sarah J. Wheelan:
Efficient "pythonic" access to FASTA files using pyfaidx. PeerJ Prepr. 3: e970 (2015) - 2014
- [j7]Subhajyoti De, Brent S. Pedersen, Katerina J. Kechris:
The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment. Briefings Bioinform. 15(6): 919-928 (2014) - 2013
- [j6]Brent S. Pedersen, Ivana V. Yang, Subhajyoti De:
CruzDB: software for annotation of genomic intervals with UCSC genome-browser database. Bioinform. 29(23): 3003-3006 (2013) - 2012
- [j5]Brent S. Pedersen, David A. Schwartz, Ivana V. Yang, Katerina J. Kechris:
Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values. Bioinform. 28(22): 2986-2988 (2012) - 2011
- [j4]Brent S. Pedersen, Haibao Tang, Michael Freeling:
Gobe: an interactive, web-based tool for comparative genomic visualization. Bioinform. 27(7): 1015-1016 (2011) - [j3]Ryan K. Dale, Brent S. Pedersen, Aaron R. Quinlan:
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. Bioinform. 27(24): 3423-3424 (2011) - [j2]Haibao Tang, Eric Lyons, Brent S. Pedersen, James C. Schnable, Andrew H. Paterson, Michael Freeling:
Screening synteny blocks in pairwise genome comparisons through integer programming. BMC Bioinform. 12: 102 (2011) - [j1]Laurence D. Parnell, Pierre Lindenbaum, Khader Shameer, Giovanni Marco Dall'Olio, Daniel C. Swan, Lars Juhl Jensen, Simon J. Cockell, Brent S. Pedersen, Mary E. Mangan, Christopher A. Miller, István Albert:
BioStar: An Online Question & Answer Resource for the Bioinformatics Community. PLoS Comput. Biol. 7(10) (2011)
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