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ORCIDManuel C. Peitsch
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2010 – 2019
- 2019
[j21]Vincenzo Belcastro
, Stephane Cano, Diego Marescotti, Stefano Acali, Carine Poussin, Ignacio Gonzalez-Suarez, Florian Martin, Filipe Bonjour, Nikolai V. Ivanov, Manuel C. Peitsch, Julia Hoeng:
GladiaTOX: GLobal Assessment of Dose-IndicAtor in TOXicology. Bioinform. 35(20): 4190-4192 (2019)- [j20]Florian Martin, Sylvain Gubian, Marja Talikka, Julia Hoeng, Manuel C. Peitsch:
NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks. BMC Bioinform. 20(1): 451 (2019) - [c8]Florian Martin, Marja Talikka, Julia Hoeng, Manuel C. Peitsch:
Systems Toxicology Approach to Unravel Early Indicators of Squamous Cell Carcinoma Rate in Rat Nasal Epithelium Induced by Formaldehyde Exposure. PACBB 2019: 16-24 - 2017
- [i1]Stéphanie Boué, Thomas E. Exner, Samik Ghosh, Vincenzo Belcastro, Joh Dokler, David Page, Akash R. Boda, Filipe Bonjour, Barry J. Hardy, Patrick Vanscheeuwijck, Julia Hoeng, Manuel C. Peitsch:
Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure. F1000Research 6: 12- (2017) - 2016
- [j19]Juliane Fluck, Sumit Madan, Sam Ansari, Alpha Tom Kodamullil, Reagon Karki, Majid Rastegar-Mojarad, Natalie L. Catlett, William Hayes, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch:
Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL). Database J. Biol. Databases Curation 2016 (2016) - [j18]Sumit Madan, Sven Hodapp, Philipp Senger, Sam Ansari, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch, Juliane Fluck:
The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j17]Stéphanie Boué, Marja Talikka, Jurjen Willem Westra, William Hayes, Anselmo Di Fabio, Jennifer Park, Walter K. Schlage, Alain Sewer, Brett Fields, Sam Ansari, Florian Martin, Emilija Veljkovic, Renée Kenney, Manuel C. Peitsch, Julia Hoeng:
Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems. Database J. Biol. Databases Curation 2015 (2015) - [j16]Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng:
Construction of biological networks from unstructured information based on a semi-automated curation workflow. Database J. Biol. Databases Curation 2015 (2015) - [j15]Julia Hoeng, Manuel C. Peitsch, Pablo Meyer, Igor Jurisica:
Where are we at regarding species translation? A review of the sbv IMPROVER challenge. Bioinform. 31(4): 451-452 (2015) - [j14]Kahn Rhrissorrakrai, Vincenzo Belcastro, Erhan Bilal, Raquel Norel, Carine Poussin, Carole Mathis, Rémi H. J. Dulize, Nikolai V. Ivanov, Leonidas G. Alexopoulos, John Jeremy Rice, Manuel C. Peitsch, Gustavo Stolovitzky, Pablo Meyer, Julia Hoeng:
Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge. Bioinform. 31(4): 471-483 (2015) - [j13]Erhan Bilal, Theodore Sakellaropoulos, Challenge Participants, Ioannis N. Melas, Dimitris E. Messinis, Vincenzo Belcastro, Kahn Rhrissorrakrai, Pablo Meyer, Raquel Norel, Anita Iskandar, Elise Blaese, John Jeremy Rice, Manuel C. Peitsch, Julia Hoeng, Gustavo Stolovitzky, Leonidas G. Alexopoulos, Carine Poussin:
A crowd-sourcing approach for the construction of species-specific cell signaling networks. Bioinform. 31(4): 484-491 (2015) - [c7]Nikolai V. Ivanov, Carine Poussin, Stéphanie Boué, Florian Martin, Alain Sewer, Bjoern Titz, Manuel C. Peitsch, Julia Hoeng:
The systems toxicology challenge: how to leverage omics data to predict mechanisms of toxicity? BCB 2015: 487 - [c6]Jean Binder, Stéphanie Boué, Anselmo Di Fabio, Brett Fields, William Hayes, Julia Hoeng, Jennifer Park, Manuel C. Peitsch:
Reputation-Based Collaborative Network Biology. Pacific Symposium on Biocomputing 2015: 270-281 - 2014
- [j12]Erfan Younesi, Sam Ansari, Michaela Gündel, Shiva Ahmadi, Chris Coggins, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch:
CSEO - the Cigarette Smoke Exposure Ontology. J. Biomed. Semant. 5: 31 (2014) - [j11]Florian Martin, Alain Sewer, Marja Talikka, Yang Xiang, Julia Hoeng, Manuel C. Peitsch:
Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models. BMC Bioinform. 15: 238 (2014) - 2013
- [j10]Adi L. Tarca, Mario Lauria, Michael Unger, Erhan Bilal, Stéphanie Boué, Kushal Kumar Dey, Julia Hoeng, Heinz Koeppl, Florian Martin, Pablo Meyer, Preetam Nandy, Raquel Norel, Manuel C. Peitsch, John Jeremy Rice, Roberto Romero, Gustavo Stolovitzky, Marja Talikka, Yang Xiang, Christoph Zechner, Improver Dsc Collaborators:
Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. Bioinform. 29(22): 2892-2899 (2013) - [c5]Juliane Fluck, Alexander Klenner, Sumit Madan, Sam Ansari, Tamara Bobic, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch:
BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations. BioNLP@ACL 2013: 80-88 - 2012
- [j9]Pablo Meyer, Julia Hoeng, John Jeremy Rice, Raquel Norel, Jörg Sprengel, Katrin Stolle, Thomas Bonk, Stephanie Corthesy, Ajay K. Royyuru, Manuel C. Peitsch, Gustavo Stolovitzky:
Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. Bioinform. 28(9): 1193-1201 (2012) - [j8]Florian Martin, Ty M. Thomson, Alain Sewer, David A. Drubin, Carole Mathis, Dirk Weisensee, Dexter Pratt, Julia Hoeng, Manuel C. Peitsch:
Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks. BMC Syst. Biol. 6: 54 (2012) - [j7]Elyette Martin, Aurélien Monge, Jacques-Antoine Duret, Federico Gualandi, Manuel C. Peitsch, Pavel Pospisil:
Building an R&D chemical registration system. J. Cheminformatics 4: 11 (2012) - 2011
- [j6]Jurjen Willem Westra, Walter K. Schlage, Brian P. Frushour, Stephan Gebel, Natalie L. Catlett, Wan-Jiang Han, Sean F. Eddy, Arnd Hengstermann, Andrea L. Matthews, Carole Mathis, Rosemarie B. Lichtner, Carine Poussin, Marja Talikka, Emilija Veljkovic, Aaron A. Van Hooser, Benjamin Wong, Michael J. Maria, Manuel C. Peitsch, Renee Deehan, Julia Hoeng:
Construction of a computable cell proliferation network focused on non-diseased lung cells. BMC Syst. Biol. 5: 105 (2011) - [j5]Walter K. Schlage, Jurjen Willem Westra, Stephan Gebel, Natalie L. Catlett, Carole Mathis, Brian P. Frushour, Arnd Hengstermann, Aaron A. Van Hooser, Carine Poussin, Ben Wong, Michael Lietz, Jennifer Park, David A. Drubin, Emilija Veljkovic, Manuel C. Peitsch, Julia Hoeng, Renee Deehan:
A computable cellular stress network model for non-diseased pulmonary and cardiovascular tissue. BMC Syst. Biol. 5: 168 (2011)
2000 – 2009
- 2007
- [c4]Dominique Zosso, Michael Podvinec, Markus Müller, Ruedi Aebersold, Manuel C. Peitsch, Torsten Schwede:
Tandem Mass Spectrometry Protein Identification on a PC Grid. HealthGrid 2007: 3-12 - 2006
- [c3]Manuel C. Peitsch:
Grid Computing in Drug Discovery. CCGRID 2006: 3 - [c2]Michael Podvinec, Sergio Maffioletti, Peter Z. Kunszt, Konstantin Arnold, Lorenzo Cerutti, Bruno Nyffeler, Ralph Schlapbach, Can Türker, Heinz Stockinger, Arthur J. Thomas, Manuel C. Peitsch, Torsten Schwede:
The SwissBioGrid Project: Objectivse, Preliminary Results and Lessons Learned. e-Science 2006: 148 - 2005
- [j4]Ernest Feytmans, Denis Noble, Manuel C. Peitsch:
Genome Size and Numbers of Biological Functions. Trans. Comp. Sys. Biology 1: 44-49 (2005) - 2003
- [j3]Torsten Schwede, Jürgen Kopp, Nicolas Guex, Manuel C. Peitsch:
SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res. 31(13): 3381-3385 (2003) - 2002
- [j2]Manuel C. Peitsch:
About the use of protein models. Bioinform. 18(7): 934-938 (2002) - 2001
- [j1]Eugenia Migliavacca, Alexei A. Adzhubei, Manuel C. Peitsch:
MDB: a database system utilizing automatic construction of modules and STAR-derived universal language. Bioinform. 17(11): 1047-1052 (2001)
1990 – 1999
- 1997
- [c1]Manuel C. Peitsch:
Large Scale Protein Modeling and Model Repository. ISMB 1997: 234-236
Coauthor Index
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