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Luca Pireddu

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2020 – today

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2023
[c14]
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  - conf/cordi/GobleBSOEDMR0GL23
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Carole A. Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Ignacio Eguinoa, Bert Droesbeke, Hervé Ménager, Laura Rodríguez-Navas, José María Fernández, Björn A. Grüning, Simone Leo, Luca Pireddu, Michael R. Crusoe, Johan Gustafsson, Salvador Capella-Gutiérrez, Frederik Coppens:
The EOSC-Life Workflow Collaboratory for the Life Sciences. CoRDI 2023
[i3]
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  - journals/corr/abs-2312-07852
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Simone Leo, Michael R. Crusoe, Laura Rodríguez-Navas, Raül Sirvent, Alexander Kanitz, Paul De Geest, Rudolf Wittner, Luca Pireddu, Daniel Garijo, José M. Fernández, Iacopo Colonnelli, Matej Gallo, Tazro Ohta, Hirotaka Suetake, Salvador Capella-Gutiérrez, Renske de Wit, Bruno de Paula Kinoshita, Stian Soiland-Reyes:
Recording provenance of workflow runs with RO-Crate. CoRR abs/2312.07852 (2023)
2022
[c13]
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  - conf/iciap/RioLABVZVLPAP22
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Mauro Del Rio, Luca Lianas, Oskar Aspegren, Giovanni Busonera, Francesco Versaci, Renata Zelic, Per H. Vincent, Simone Leo, Andreas Pettersson, Olof Akre, Luca Pireddu:
AI Support for Accelerating Histopathological Slide Examinations of Prostate Cancer in Clinical Studies. ICIAP Workshops (1) 2022: 545-556
[p1]
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  - books/sp/22/AldinucciABCCFGGGGL0OPPQSTZ22
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Marco Aldinucci, David Atienza, Federico Bolelli, Mónica Caballero, Iacopo Colonnelli, José Flich, Jon Ander Gómez, David González, Costantino Grana, Marco Grangetto, Simone Leo, Pedro López, Dana Oniga, Roberto Paredes, Luca Pireddu, Eduardo Quiñones, Tatiana Silva, Enzo Tartaglione, Marina Zapater:
The DeepHealth Toolkit: A Key European Free and Open-Source Software for Deep Learning and Computer Vision Ready to Exploit Heterogeneous HPC and Cloud Architectures. Technologies and Applications for Big Data Value 2022: 183-202
[i2]
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  - journals/corr/abs-2207-14296
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Jan-Willem Boiten, Christian Ohmann, Ayodeji Adeniran, Steve Canham, Mónica Cano Abadia, Gauthier Chassang, Maria Luisa Chiusano, Romain David, Maddalena Fratelli, Philip Gribbon, Petr Holub, Rebecca Ludwig, Michaela Theresia Mayrhofer, Mihaela Matei, Arshiya Merchant, Maria Panagiotopoulou, Luca Pireddu, Alex Sánchez-Pla, Irene Schlünder, George Tsamis, Harald Wagener:
EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data - a concept description. CoRR abs/2207.14296 (2022)
2021
[c12]
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  - conf/ipaw/WittnerHMGGSPFM21
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Rudolf Wittner, Petr Holub, Heimo Müller, Jörg Geiger, Carole A. Goble, Stian Soiland-Reyes, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Elliot Fairweather, Jason R. Swedlow, Josh Moore, Caterina Strambio-De-Castillia, David Grunwald, Hiroki Nakae:
ISO 23494: Biotechnology - Provenance Information Model for Biological Specimen And Data. IPAW 2021: 222-225
2020
[c11]
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  - conf/icpr/CancillaCBACPGL20
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Michele Cancilla, Laura Canalini, Federico Bolelli, Stefano Allegretti, Salvador Carrión, Roberto Paredes, Jon Ander Gómez, Simone Leo, Marco Enrico Piras, Luca Pireddu, Asaf Badouh, Santiago Marco-Sola, Lluc Alvarez, Miquel Moretó, Costantino Grana:
The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications. ICPR 2020: 9881-9888
[c10]
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  - conf/mie/MasciaFUZPGJTSK20
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Cecilia Mascia, Francesca Frexia, Paolo Uva, Gianluigi Zanetti, Luca Pireddu, Gideon Giacomelli, Christina Jaeger-Schmidt, Aurelie Tomczak, Simon Schumacher, Florian Kraecher, Roland Eils, Silje Ljosland Bakke, Heather Leslie:
The openEHR Genomics Project. MIE 2020: 443-447

2010 – 2019

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2019
[j8]
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  - journals/bioinformatics/KhoonsariMBBCCC19
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Payam Emami Khoonsari, Pablo A. Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly A. Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth:
Interoperable and scalable data analysis with microservices: applications in metabolomics. Bioinform. 35(19): 3752-3760 (2019)
[c9]
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  - conf/europar/GaggeroBPZ19
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Massimo Gaggero, Giovanni Busonera, Luca Pireddu, Gianluigi Zanetti:
TDM Edge Gateway: A Flexible Microservice-Based Edge Gateway Architecture for Heterogeneous Sensors. Euro-Par Workshops 2019: 124-135
[c8]
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  - conf/supercomputer/PirasPMZ19
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Marco Enrico Piras, Luca Pireddu, Marco Moro, Gianluigi Zanetti:
Container Orchestration on HPC Clusters. ISC Workshops 2019: 25-35
2018
[c7]
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  - conf/bhi/VersaciPZ18
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Francesco Versaci, Luca Pireddu, Gianluigi Zanetti:
Kafka interfaces for composable streaming genomics pipelines. BHI 2018: 259-262
2017
[j7]
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  - journals/bioinformatics/PirasPZ17
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Marco Enrico Piras, Luca Pireddu, Gianluigi Zanetti:
wft4galaxy: a workflow testing tool for galaxy. Bioinform. 33(23): 3805-3807 (2017)
[i1]
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  - journals/peerjpre/VersaciPZ17
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Francesco Versaci, Luca Pireddu, Gianluigi Zanetti:
Distributed stream processing for genomics pipelines. PeerJ Prepr. 5: e3338 (2017)
2016
[c6]
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  - conf/bigdataconf/VersaciPZ16
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Francesco Versaci, Luca Pireddu, Gianluigi Zanetti:
Scalable genomics: From raw data to aligned reads on Apache YARN. IEEE BigData 2016: 1232-1241
2014
[j6]
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  - journals/bioinformatics/SchumacherPNKKZH14
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André Schumacher, Luca Pireddu, Matti Niemenmaa, Aleksi Kallio, Eija Korpelainen, Gianluigi Zanetti, Keijo Heljanko:
SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop. Bioinform. 30(1): 119-120 (2014)
[j5]
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  - journals/bioinformatics/LeoPCLSAZ14
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Simone Leo, Luca Pireddu, Gianmauro Cuccuru, Luca Lianas, Nicola Soranzo, Enis Afgan, Gianluigi Zanetti:
BioBlend.objects: metacomputing with Galaxy. Bioinform. 30(19): 2816-2817 (2014)
[c5]
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  - conf/bcb/PiredduLSZ14
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Luca Pireddu, Simone Leo, Nicola Soranzo, Gianluigi Zanetti:
A Hadoop-Galaxy adapter for user-friendly and scalable data-intensive bioinformatics in Galaxy. BCB 2014: 184-191
[c4]
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  - conf/hpcs/CuccuruLLMPPUAFZ14
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Gianmauro Cuccuru, Simone Leo, Luca Lianas, Michele Muggiri, Andrea Pinna, Luca Pireddu, Paolo Uva, Andrea Angius, Giorgio Fotia, Gianluigi Zanetti:
An automated infrastructure to support high-throughput bioinformatics. HPCS 2014: 600-607
2011
[j4]
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  - journals/bioinformatics/PiredduLZ11
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Luca Pireddu, Simone Leo, Gianluigi Zanetti:
SEAL: a distributed short read mapping and duplicate removal tool. Bioinform. 27(15): 2159-2160 (2011)
2010
[j3]
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  - journals/jcheminf/PiredduMFRM10
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Luca Pireddu, Lisa Michielan, Matteo Floris, Patricia Rodriguez-Tomé, Stefano Moro:
Fingerprint-based detection of acute aquatic toxicity. J. Cheminformatics 2(S-1): 46 (2010)

2000 – 2009

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2009
[j2]
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  - journals/nar/MasciocchiFFSFPPCRM09
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Joel Masciocchi, Gianfranco Frau, Marco Fanton, Mattia Sturlese, Matteo Floris, Luca Pireddu, Piergiorgio Palla, Fabian Cedrati, Patricia Rodriguez-Tomé, Stefano Moro:
MMsINC: a large-scale chemoinformatics database. Nucleic Acids Res. 37(Database-Issue): 284-290 (2009)
2006
[j1]
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  - journals/nar/PiredduSLG06
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Luca Pireddu, Duane Szafron, Paul Lu, Russell Greiner:
The Path-A metabolic pathway prediction web server. Nucleic Acids Res. 34(Web-Server-Issue): 714-719 (2006)
2005
[c3]
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  - conf/aaai/PoulinSLGWEFPP05
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Brett Poulin, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Roman Eisner, Alona Fyshe, Brandon Pearcy, Luca Pireddu:
The Proteome Analyst Suite of Automated Function Prediction Tools. AAAI 2005: 1698-1699
[c2]
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Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu, David S. Wishart:
Pathway Analyst--Automated Metabolic Pathway Prediction. CIBCB 2005: 243-250
2004
[c1]
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Luca Pireddu, Mario A. Nascimento:
Taxonomy-Based Routing Indices for Peer-to-Peer Networks. Workshop on Peer-to-Peer Information Retrieval 2004

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