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Tony C. Pan
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2020 – today
- 2020
[j27]Tony Pan
, Rahul Nihalani, Srinivas Aluru:
Fast de Bruijn Graph Compaction in Distributed Memory Environments. IEEE ACM Trans. Comput. Biol. Bioinform. 17(1): 136-148 (2020)
2010 – 2019
- 2019
- [j26]Tony Pan, Patrick Flick, Chirag Jain, Yongchao Liu, Srinivas Aluru:
Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1117-1131 (2019) - 2018
- [b1]Tony C. Pan:
Distributed memory building blocks for massive biological sequence analysis. Georgia Institute of Technology, Atlanta, GA, USA, 2018 - [c26]Sanchit Misra, Tony C. Pan, Kanak Mahadik, George Powley, Priya N. Vaidya, Md. Vasimuddin, Srinivas Aluru:
Performance extraction and suitability analysis of multi- and many-core architectures for next generation sequencing secondary analysis. PACT 2018: 3:1-3:14 - [c25]Tony C. Pan, Sanchit Misra, Srinivas Aluru:
Optimizing high performance distributed memory parallel hash tables for DNA k-mer counting. SC 2018: 11:1-11:13 - 2017
- [j25]Patrick Flick, Chirag Jain, Tony Pan, Srinivas Aluru:
Reprint of "A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications". Parallel Comput. 70: 54-65 (2017) - [j24]Chirag Jain, Patrick Flick, Tony Pan, Oded Green, Srinivas Aluru:
An Adaptive Parallel Algorithm for Computing Connected Components. IEEE Trans. Parallel Distributed Syst. 28(9): 2428-2439 (2017) - [i6]Yongchao Liu, Tony Pan, Oded Green, Srinivas Aluru:
Parallelized Kendall's Tau Coefficient Computation via SIMD Vectorized Sorting On Many-Integrated-Core Processors. CoRR abs/1704.03767 (2017) - 2016
- [c24]Tony Pan, Patrick Flick, Chirag Jain, Yongchao Liu, Srinivas Aluru:
Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems. BCB 2016: 422-433 - [c23]Yongchao Liu, Tony Pan, Srinivas Aluru:
Parallel Pairwise Correlation Computation on Intel Xeon Phi Clusters. SBAC-PAD 2016: 141-149 - [i5]Yongchao Liu, Tony Pan, Srinivas Aluru:
Parallel Pairwise Correlation Computation On Intel Xeon Phi Clusters. CoRR abs/1605.01584 (2016) - [i4]Chirag Jain, Patrick Flick, Tony Pan, Oded Green, Srinivas Aluru:
An Adaptive Parallel Algorithm for Computing Connectivity. CoRR abs/1607.06156 (2016) - 2015
- [c22]Patrick Flick, Chirag Jain, Tony Pan, Srinivas Aluru:
A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications. SC 2015: 15:1-15:11 - 2014
- [j23]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Scott Klasky, Joel H. Saltz:
Region templates: Data representation and management for high-throughput image analysis. Parallel Comput. 40(10): 589-610 (2014) - [i3]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Scott Klasky, Joel H. Saltz:
Region Templates: Data Representation and Management for Large-Scale Image Analysis. CoRR abs/1405.7958 (2014) - 2013
- [j22]Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, Scott Klasky, Tahsin M. Kurç:
Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures. Int. J. High Perform. Comput. Appl. 27(3): 263-272 (2013) - [j21]Cristobal Vergara-Niedermayr, Fusheng Wang, Tony Pan, Tahsin M. Kurç, Joel H. Saltz:
Semantically Interoperable XML Data. Int. J. Semantic Comput. 7(3): 237-256 (2013) - [j20]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz:
Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines. Parallel Comput. 39(4-5): 189-211 (2013) - [c21]Jun Kong, Fusheng Wang, George Teodoro, Lee A. D. Cooper, Carlos Sanchez Moreno, Tahsin M. Kurç, Tony Pan, Joel H. Saltz, Daniel J. Brat:
High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates. BIBM 2013: 229-236 - [c20]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Norbert Podhorszki, Scott Klasky, Joel H. Saltz:
High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms. IPDPS 2013: 103-114 - 2012
- [j19]Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Jingjing Gao, Christina Appin, Sharath R. Cholleti, Tony Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz:
Integrated morphologic analysis for the identification and characterization of disease subtypes. J. Am. Medical Informatics Assoc. 19(2): 317-323 (2012) - [j18]Bradley James Erickson, Tony Pan, Daniel S. Marcus:
Whitepapers on Imaging Infrastructure for Research - Part 1: General Workflow Considerations. J. Digit. Imaging 25(4): 449-453 (2012) - [j17]Daniel S. Marcus, Bradley James Erickson, Tony Pan:
Imaging Infrastructure for Research. Part 2. Data Management Practices. J. Digit. Imaging 25(5): 566-569 (2012) - [j16]Tony Pan, Bradley James Erickson, Daniel S. Marcus:
Whitepapers on Imaging Infrastructure for Research Part Three: Security and Privacy. J. Digit. Imaging 25(6): 692-702 (2012) - [j15]Lee A. D. Cooper, Alexis B. Carter, Alton B. Farris, Fusheng Wang, Jun Kong, David A. Gutman, Patrick M. Widener, Tony C. Pan, Sharath R. Cholleti, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz:
Digital Pathology: Data-Intensive Frontier in Medical Imaging. Proc. IEEE 100(4): 991-1003 (2012) - [c19]Tahsin M. Kurç, Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, David A. Gutman, Daniel J. Brat, Fusheng Wang:
High Performance Computing for Integrative Analysis of Large Pathology Image Datasets. AMIA 2012 - [c18]George Teodoro, Tahsin M. Kurç, Tony Pan, Lee A. D. Cooper, Jun Kong, Patrick M. Widener, Joel H. Saltz:
Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems. IPDPS 2012: 1093-1104 - [i2]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz:
Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines. CoRR abs/1209.3314 (2012) - [i1]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz:
High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms. CoRR abs/1209.3332 (2012) - 2011
- [j14]David J. Foran, Lin Yang, Wenjin Chen, Jun Hu, Lauri A. Goodell, Michael Reiss, Fusheng Wang, Tahsin M. Kurç, Tony Pan, Ashish Sharma, Joel H. Saltz:
ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J. Am. Medical Informatics Assoc. 18(4): 403-415 (2011) - [j13]Jun Kong, Lee A. D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Ashish Sharma, Tony Pan, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Joel H. Saltz, Daniel J. Brat:
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes. IEEE Trans. Biomed. Eng. 58(12): 3469-3474 (2011) - 2010
- [j12]Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Sharath R. Cholleti, Tony C. Pan, Patrick M. Widener, Ashish Sharma, Tom Mikkelsen, Adam E. Flanders, Daniel L. Rubin, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz:
An Integrative Approach for In Silico Glioma Research. IEEE Trans. Biomed. Eng. 57(10): 2617-2621 (2010) - [c17]Fusheng Wang, Tahsin M. Kurç, Patrick M. Widener, Tony Pan, Jun Kong, Lee A. D. Cooper, David A. Gutman, Ashish Sharma, Sharath R. Cholleti, Vijay Kumar:
High-Performance Systems for in Silico Microscopy Imaging Studies. DILS 2010: 3-18 - [c16]Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee A. D. Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran:
High Performance Computing Techniques for Scaling Image Analysis Workflows. PARA (2) 2010: 67-77
2000 – 2009
- 2009
- [j11]Tahsin M. Kurç, Shannon Hastings, Vijay S. Kumar, Stephen Langella, Ashish Sharma, Tony Pan, Scott Oster, David Ervin, Justin Permar, Sivaramakrishnan Narayanan, Yolanda Gil, Ewa Deelman, Mary W. Hall, Joel H. Saltz:
HPC and Grid Computing for Integrative Biomedical Research. Int. J. High Perform. Comput. Appl. 23(3): 252-264 (2009) - [j10]Ashish Sharma, Tony Pan, Berkant Barla Cambazoglu, Metin N. Gurcan, Tahsin M. Kurç, Joel H. Saltz:
VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid. J. Digit. Imaging 22(1): 1-10 (2009) - 2008
- [j9]Joel H. Saltz, Tahsin M. Kurç, Shannon Hastings, Stephen Langella, Scott Oster, David Ervin, Ashish Sharma, Tony Pan, Metin N. Gurcan, Justin Permar, Renato Ferreira, Philip R. O. Payne, Ümit V. Çatalyürek, Enrico Caserta, Gustavo Leone, Michael C. Ostrowski, Ravi K. Madduri, Ian T. Foster, Subhasree Madhavan, Kenneth H. Buetow, Krishnakant Shanbhag, Eliot L. Siegel:
e-Science, caGrid, and Translational Biomedical Research. Computer 41(11): 58-66 (2008) - [j8]George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz:
A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. Int. J. Parallel Program. 36(2): 250-266 (2008) - [j7]Stephen Langella, Shannon Hastings, Scott Oster, Tony Pan, Ashish Sharma, Justin Permar, David Ervin, Berkant Barla Cambazoglu, Tahsin M. Kurç, Joel H. Saltz:
Model Formulation: Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment. J. Am. Medical Informatics Assoc. 15(3): 363-373 (2008) - [j6]Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee A. D. Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang:
An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. J. Biomed. Informatics 41(6): 863-873 (2008) - [j5]Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Tony C. Pan, Sunny K. Chow, Stephan Lamont, Maryann E. Martone, Joel H. Saltz:
Large-Scale Biomedical Image Analysis in Grid Environments. IEEE Trans. Inf. Technol. Biomed. 12(2): 154-161 (2008) - [c15]Joel H. Saltz, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Philip R. O. Payne, Renato Ferreira, Beth Plale, Carole A. Goble, David Ervin, Ashish Sharma, Tony Pan, Justin Permar, Peter Brezany, Frank Siebenlist, Ravi K. Madduri, Ian T. Foster, Krishnakant Shanbhag, Charlie Mead, Neil P. Chue Hong:
A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research. HealthGrid 2008: 224-237 - [c14]Joel H. Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Renato Ferreira, Justin Permar, Ashish Sharma, David Ervin, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç:
Translational research design templates, Grid computing, and HPC. IPDPS 2008: 1-15 - 2007
- [j4]Richard Sharp, Randall Ridgway, Kishore Mosaliganti, Pamela Wenzel, Tony Pan, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz:
Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data. Comput. Sci. Eng. 9(1): 38-47 (2007) - [j3]Metin N. Gurcan, Tony Pan, Ashish Sharma, Tahsin M. Kurç, Scott Oster, Stephen Langella, Shannon Hastings, Khan M. Siddiqui, Eliot L. Siegel, Joel H. Saltz:
GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support. J. Digit. Imaging 20(2): 160-171 (2007) - [c13]Antonio Ruiz, Manuel Ujaldon, Jose Antonio Andrades, Jose Becerra, Kun Huang, Tony Pan, Joel H. Saltz:
The GPU on biomedical image processing for color and phenotype analysis. BIBE 2007: 1124-1128 - 2006
- [c12]Metin N. Gurcan, Tony Pan, Hiroyuki Shimada, Joel H. Saltz:
Image Analysis for Neuroblastoma Classification: Segmentation of Cell Nuclei. EMBC 2006: 4844-4847 - [c11]Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Olcay Sertel, Jun Kong, Berkant Barla Cambazoglu, Tony Pan, Ashish Sharma, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Metin Nafi Gürcan, Joel H. Saltz:
Service-Based Access to and Processing of Large Scientific Datasets. High Performance Computing Workshop 2006: 345-362 - [c10]Jeff Prescott, Matthew Clary, Gregory J. Wiet, Tony Pan, Kun Huang:
Automatic registration of large set of microscopic images using high-level features. ISBI 2006: 1284-1287 - [c9]Kishore Mosaliganti, Tony Pan, Richard Sharp, Randall Ridgway, Srivathsan Iyengar, Alexandra Gulacy, Pamela Wenzel, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz:
Registration and 3D visualization of large microscopy images. Medical Imaging: Image Processing 2006: 61442V - [c8]George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz:
A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. SBAC-PAD 2006: 81-90 - 2005
- [j2]Shannon Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Joel H. Saltz:
Application of Information Technology: A Grid-Based Image Archival and Analysis System. J. Am. Medical Informatics Assoc. 12(3): 286-295 (2005) - [j1]Shannon Hastings, Matheus Ribeiro, Stephen Langella, Scott Oster, Ümit V. Çatalyürek, Tony Pan, Kun Huang, Renato Ferreira, Joel H. Saltz, Tahsin M. Kurç:
XML database support for distributed execution of data-intensive scientific workflows. SIGMOD Rec. 34(3): 50-55 (2005) - [c7]Benjamin Rutt, Vijay S. Kumar, Tony Pan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Yujun Wang:
Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying. CLUSTER 2005: 1-10 - [c6]Ümit V. Çatalyürek, Shannon Hastings, Kun Huang, Vijay S. Kumar, Tahsin M. Kurç, Stephen Langella, Sivaramakrishnan Narayanan, Scott Oster, Tony Pan, Benjamin Rutt, Xi Zhang, Joel H. Saltz:
Supporting Large Scale Medical and Scientific Datasets. PARCO 2005: 3-14 - [c5]Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Daniel Janies, Joel H. Saltz:
Grid-based management of biomedical data using an XML-based distributed data management system. SAC 2005: 105-109 - 2004
- [c4]Xi Zhang, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz:
Serving queries to multi-resolution datasets on disk-based storage clusters. CCGRID 2004: 490-498 - [c3]Matheus Ribeiro, Tahsin M. Kurç, Tony Pan, Kun Huang, Ümit V. Çatalyürek, Xi Zhang, Stephen Langella, Shannon Hastings, Scott Oster, Renato Ferreira, Joel H. Saltz:
Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data. High Performance Computing Workshop 2004: 403-422 - [c2]Xi Zhang, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Pete Wyckoff, Joel H. Saltz:
Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms. HPDC 2004: 4-13 - 2003
- [c1]Shannon Hastings, Tahsin M. Kurç, Stephen Langella, Ümit V. Çatalyürek, Tony Pan, Joel H. Saltz:
Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications. CCGRID 2003: 36-43
Coauthor Index
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