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2020 – today
- 2021
[j33]Nishanthi Gangadharan
, David Sewell, Richard Turner, Ray Field, Matthew Cheeks, Stephen G. Oliver, Nigel K. H. Slater, Duygu Dikicioglu:
Data intelligence for process performance prediction in biologics manufacturing. Comput. Chem. Eng. 146: 107226 (2021)- [j32]Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni, Nomi L. Harris, Christopher J. Mungall, Siddartha Basu, Rex L. Chisholm, Robert J. Dodson, Eric Hartline, Petra Fey, Paul D. Thomas, Laurent-Philippe Albou, Dustin Ebert, Michael J. Kesling, Huaiyu Mi, Anushya Muruganujan, Xiaosong Huang, Tremayne Mushayahama, Sandra A. LaBonte, Deborah A. Siegele, Giulia Antonazzo, Helen Attrill, Nick H. Brown, Phani V. Garapati, Steven J. Marygold, Vitor Trovisco, Gilberto dos Santos, Kathleen Falls, Christopher J. Tabone, Pinglei Zhou, Joshua L. Goodman, Victor B. Strelets, Jim Thurmond, Penelope Garmiri, Rizwan Ishtiaq, Milagros Rodríguez-López, Marcio Luis Acencio, Martin Kuiper, Astrid Lægreid, Colin Logie, Ruth C. Lovering, Barbara Kramarz, Shirin C. C. Saverimuttu, Sandra M. Pinheiro, Heather Gunn, Renzhi Su, Katherine E. Thurlow, Marcus C. Chibucos, Michelle G. Giglio, Suvarna Nadendla, James B. Munro, Rebecca C. Jackson, Margaret J. Duesbury, Noemi del-Toro, Birgit H. M. Meldal, Kalpana Paneerselvam, Livia Perfetto, Pablo Porras, Sandra E. Orchard, Anjali Shrivastava, Hsin-Yu Chang, Robert D. Finn, Alex L. Mitchell, Neil D. Rawlings, Lorna J. Richardson, Amaia Sangrador-Vegas, Judith A. Blake, Karen R. Christie, Mary E. Dolan, Harold J. Drabkin, David P. Hill, Li Ni, Dmitry M. Sitnikov, Midori A. Harris, Stephen G. Oliver, Kim Rutherford, Valerie Wood, Jaqueline Hayles, Jürg Bähler, Elizabeth R. Bolton, Jeffrey DePons, Melinda R. Dwinell, G. Thomas Hayman, Mary L. Kaldunski, Anne E. Kwitek, Stanley J. F. Laulederkind, Cody Plasterer, Marek Tutaj, Mahima Vedi, Shur-Jen Wang, Peter D'Eustachio, Lisa Matthews, James P. Balhoff, Suzi A. Aleksander, Michael J. Alexander, J. Michael Cherry, Stacia R. Engel, Felix Gondwe, Kalpana Karra, Stuart R. Miyasato, Robert S. Nash, Matt Simison, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Marc Feuermann, Pascale Gaudet, Anne Morgat, Erica Bakker, Tanya Z. Berardini, Leonore Reiser, Shabari Subramaniam, Eva Huala, Cecilia N. Arighi, Andrea H. Auchincloss, Kristian B. Axelsen, Ghislaine Argoud-Puy, Alex Bateman, Marie-Claude Blatter, Emmanuel Boutet, Emily Bowler, Lionel Breuza, Alan J. Bridge, Ramona Britto, Hema Bye-A-Jee, Cristina Casals-Casas, Elisabeth Coudert, Paul Denny, Anne Estreicher, Maria Livia Famiglietti, George E. Georghiou, Arnaud Gos, Nadine Gruaz-Gumowski, Emma Hatton-Ellis, Chantal Hulo, Alexandr Ignatchenko, Florence Jungo, Kati Laiho, Philippe Le Mercier, Damien Lieberherr, Antonia Lock, Yvonne Lussi, Alistair MacDougall, Michele Magrane, Maria Jesus Martin, Patrick Masson, Darren A. Natale, Nevila Hyka-Nouspikel, Ivo Pedruzzi, Lucille Pourcel, Sylvain Poux, Sangya Pundir, Catherine Rivoire, Elena Speretta, Shyamala Sundaram, Nidhi Tyagi, Kate Warner, Rossana Zaru, Cathy H. Wu, Alexander D. Diehl, Juancarlos Chan, Christian A. Grove, Raymond Y. N. Lee, Hans-Michael Müller, Daniela Raciti, Kimberly Van Auken, Paul W. Sternberg, Matthew Berriman, Michael Paulini, Kevin L. Howe, Sibyl Gao, Adam Wright, Lincoln Stein, Douglas G. Howe, Sabrina Toro, Monte Westerfield, Pankaj Jaiswal, Laurel Cooper, Justin Elser:
The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 49(Database-Issue): D325-D334 (2021) - [c4]Jorge Júlvez, Stephen G. Oliver:
Extending the Modeling and Analysis Capabilities of Continuous Petri Nets by Flexible Nets. CDC 2021: 1750-1756 - 2020
- [j31]Jorge Júlvez, Stephen G. Oliver:
Steady State Analysis of Flexible Nets. IEEE Trans. Autom. Control. 65(6): 2510-2525 (2020) - [c3]Jorge Júlvez, Stephen G. Oliver:
fnyzer: A Python Package for the Analysis of Flexible Nets. CMSB 2020: 349-355
2010 – 2019
- 2019
- [j30]Jorge Júlvez, Stephen G. Oliver:
Flexible Nets: a modeling formalism for dynamic systems with uncertain parameters. Discret. Event Dyn. Syst. 29(3): 367-392 (2019) - [j29]Antonia Lock, Kim Rutherford, Midori A. Harris, Jacqueline Hayles, Stephen G. Oliver, Jürg Bähler, Valerie Wood:
PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information. Nucleic Acids Res. 47(Database-Issue): D821-D827 (2019) - 2018
- [j28]Hayden Tronnolone, Jennifer M. Gardner, Joanna F. Sundstrom, Vladimir Jiranek, Stephen G. Oliver, Benjamin J. Binder:
TAMMiCol: Tool for analysis of the morphology of microbial colonies. PLoS Comput. Biol. 14(12) (2018) - 2016
- [j27]Isik Baris Fidaner, Ayca Cankorur-Cetinkaya, Duygu Dikicioglu, Betül Kirdar, Ali Taylan Cemgil, Stephen G. Oliver:
CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data. Bioinform. 32(3): 388-397 (2016) - 2015
- [j26]Mark D. McDowall, Midori A. Harris, Antonia Lock, Kim Rutherford, Daniel M. Staines, Jürg Bähler, Paul J. Kersey, Stephen G. Oliver, Valerie Wood:
PomBase 2015: updates to the fission yeast database. Nucleic Acids Res. 43(Database-Issue): 656-661 (2015) - [j25]Benjamin J. Binder, Joanna F. Sundstrom, Jennifer M. Gardner, Vladimir Jiranek, Stephen G. Oliver:
Quantifying Two-Dimensional Filamentous and Invasive Growth Spatial Patterns in Yeast Colonies. PLoS Comput. Biol. 11(2) (2015) - [c2]Panayotis Vlastaridis, Stephen G. Oliver, Yves Van de Peer, Grigoris D. Amoutzias:
The Challenges of Interpreting Phosphoproteomics Data: A Critical View Through the Bioinformatics Lens. CIBB 2015: 196-204 - 2014
- [j24]Kim M. Rutherford, Midori A. Harris, Antonia Lock, Stephen G. Oliver, Valerie Wood:
Canto: an online tool for community literature curation. Bioinform. 30(12): 1791-1792 (2014) - 2013
- [j23]Midori A. Harris, Antonia Lock, Jürg Bähler, Stephen G. Oliver, Valerie Wood:
FYPO: the fission yeast phenotype ontology. Bioinform. 29(13): 1671-1678 (2013) - 2012
- [j22]Pinar Pir, Alex Gutteridge, Jian Wu, Bharat Rash, Douglas B. Kell, Nianshu Zhang, Stephen G. Oliver:
The genetic control of growth rate: a systems biology study in yeast. BMC Syst. Biol. 6: 4 (2012) - [j21]Valerie Wood, Midori A. Harris, Mark D. McDowall, Kim Rutherford, Brendan W. Vaughan, Daniel M. Staines, Martin Aslett, Antonia Lock, Jürg Bähler, Paul J. Kersey, Stephen G. Oliver:
PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Res. 40(Database-Issue): 695-699 (2012) - 2011
- [j20]Nicola Bonzanni, Nianshu Zhang, Stephen G. Oliver, Jasmin Fisher:
The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae. Bioinform. 27(13): 283-287 (2011) - [j19]Duygu Dikicioglu, Muhammed Erkan Karabekmez, Bharat Rash, Pinar Pir, Betül Kirdar, Stephen G. Oliver:
How yeast re-programmes its transcriptional profile in response to different nutrient impulses. BMC Syst. Biol. 5: 148 (2011) - 2010
- [j18]Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes:
Further developments towards a genome-scale metabolic model of yeast. BMC Syst. Biol. 4: 145 (2010)
2000 – 2009
- 2009
- [j17]Daniel Jameson, David A. Turner, John Ankers, Stephnie Kennedy, Sheila Ryan, Neil Swainston, Tony Griffiths, David G. Spiller, Stephen G. Oliver, Michael R. H. White, Douglas B. Kell, Norman W. Paton:
Information management for high content live cell imaging. BMC Bioinform. 10 (2009) - [j16]Ross D. King, Jem J. Rowland, Wayne Aubrey, Maria Liakata, Magdalena Markham, Larisa N. Soldatova, Ken E. Whelan, Amanda Clare, Mike Young, Andrew Sparkes, Stephen G. Oliver, Pinar Pir:
The Robot Scientist Adam. Computer 42(8): 46-54 (2009) - 2008
- [j15]Daniel Jameson, Kevin L. Garwood, Christopher Garwood, Tim Booth, Pinar Alper, Stephen G. Oliver, Norman W. Paton:
Data capture in bioinformatics: requirements and experiences with Pedro. BMC Bioinform. 9 (2008) - [j14]Peter Li, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell:
Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data. BMC Bioinform. 9 (2008) - [j13]Jennifer A. Siepen, Khalid Belhajjame, Julian N. Selley, Suzanne M. Embury, Norman W. Paton, Carole A. Goble, Stephen G. Oliver, Robert Stevens, Lucas Zamboulis, Nigel J. Martin, Alexandra Poulovassilis, Philip Jones, Richard G. Côté, Henning Hermjakob, Melissa M. Pentony, David T. Jones, Christine A. Orengo, Simon J. Hubbard:
ISPIDER Central: an integrated database web-server for proteomics. Nucleic Acids Res. 36(Web-Server-Issue): 485-490 (2008) - 2007
- [j12]Grigoris D. Amoutzias, Elgar Pichler, Nina Mian, David De Graaf, Anastasia Imsiridou, Marc Robinson-Rechavi, Erich Bornberg-Bauer, David L. Robertson, Stephen G. Oliver:
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network. BMC Syst. Biol. 1: 34 (2007) - [j11]Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson:
Similarity in expression accounts for correlated evolution of interacting proteins. BMC Syst. Biol. 1(S-1): P59 (2007) - [j10]Intikhab Alam, Mike Cornell, Darren M. Soanes, Cornelia Hedeler, Han Min Wong, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver, Norman W. Paton:
A Methodology for Comparative Functional Genomics. J. Integr. Bioinform. 4(3) (2007) - 2006
- [j9]Pinar Pir, Betül Kirdar, Andrew Hayes, Z. Ilsen Önsan, Kutlu Ö. Ülgen, Stephen G. Oliver:
Integrative investigation of metabolic and transcriptomic data. BMC Bioinform. 7: 203 (2006) - [j8]Irena Spasic, Warwick B. Dunn, Giles Velarde, Andy Tseng, Helen Jenkins, Nigel Hardy, Stephen G. Oliver, Douglas B. Kell:
MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics. BMC Bioinform. 7: 281 (2006) - [j7]Kevin L. Garwood, Christopher Garwood, Cornelia Hedeler, Tony Griffiths, Neil Swainston, Stephen G. Oliver, Norman W. Paton:
Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it. BMC Bioinform. 7: 532 (2006) - 2004
- [j6]Kevin L. Garwood, Chris F. Taylor, Kai J. Runte, Andy Brass, Stephen G. Oliver, Norman W. Paton:
Pedro: a configurable data entry tool for XML. Bioinform. 20(15): 2463-2465 (2004) - [j5]J. E. Mabey, M. J. Anderson, Peter F. Giles, Crispin J. Miller, Terri K. Attwood, Norman W. Paton, Erich Bornberg-Bauer, G. D. Robson, Stephen G. Oliver, David W. Denning:
CADRE: the Central Aspergillus Data REpository. Nucleic Acids Res. 32(Database-Issue): 401-405 (2004) - 2003
- [j4]Paul E. Boardman, Stephen G. Oliver, Simon J. Hubbard:
SiteSeer: visualisation and analysis of transcription factor binding sites in nucleotide sequences. Nucleic Acids Res. 31(13): 3572-3575 (2003) - 2001
- [j3]Christopher H. Bryant, Stephen H. Muggleton, Stephen G. Oliver, Douglas B. Kell, Philip G. K. Reiser, Ross D. King:
Combining Inductive Logic Programming, Active Learning and Robotics to Discover the Function of Genes. Electron. Trans. Artif. Intell. 5(B): 1-36 (2001) - [j2]Philip G. K. Reiser, Ross D. King, Douglas B. Kell, Stephen H. Muggleton, Christopher H. Bryant, Stephen G. Oliver:
Developing a Logical Model of Yeast Metabolism. Electron. Trans. Artif. Intell. 5(B): 223-244 (2001) - [c1]Mike Cornell, Norman W. Paton, Shengli Wu, Carole A. Goble, Crispin J. Miller, Paul Kirby, Karen Eilbeck, Andy Brass, Andrew Hayes, Stephen G. Oliver:
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data. BIBE 2001: 15-22 - 2000
- [j1]Norman W. Paton, Shakeel A. Khan, Andrew Hayes, Fouzia Moussouni, Andy Brass, Karen Eilbeck, Carole A. Goble, Simon J. Hubbard, Stephen G. Oliver:
Conceptual modelling of genomic information. Bioinform. 16(6): 548-557 (2000)
Coauthor Index
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