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ORCIDDaniel A. Kirshner
Person information
- affiliation: Lawrence Livermore National Laboratory, Biosciences and Biotechnology Division, CA, USA
- affiliation: University of California, Berkeley Phylogenomics Group, CA, USA
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2020 – today
- 2023
[j4]Garrett A. Stevenson
, Dan Kirshner, Brian J. Bennion, Yue Yang, Xiaohua Zhang, Adam T. Zemla, Marisa W. Torres, Aidan Epstein, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Sergio Ernesto Wong, Jonathan E. Allen, Felice C. Lightstone:
Clustering Protein Binding Pockets and Identifying Potential Drug Interactions: A Novel Ligand-Based Featurization Method. J. Chem. Inf. Model. 63(21): 6655-6666 (2023)- 2022
- [c2]Dong H. Ahn, Xiaohua Zhang, Jeffrey Mast, Stephen Herbein, Francesco Di Natale, Dan Kirshner, Sam Ade Jacobs, Ian Karlin, Daniel J. Milroy, Bronis R. de Supinski, Brian Van Essen, Jonathan E. Allen, Felice C. Lightstone:
Scalable Composition and Analysis Techniques for Massive Scientific Workflows. e-Science 2022: 32-43 - 2021
- [j3]Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, W. F. Drew Bennett, Daniel A. Kirshner, Sergio Ernesto Wong, Felice C. Lightstone, Jonathan E. Allen:
Improved Protein-Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. J. Chem. Inf. Model. 61(4): 1583-1592 (2021) - [c1]Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio Ernesto Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen:
High-throughput virtual screening of small molecule inhibitors for SARS-CoV-2 protein targets with deep fusion models. SC 2021: 74 - [i2]Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio Ernesto Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen:
High-Throughput Virtual Screening of Small Molecule Inhibitors for SARS-CoV-2 Protein Targets with Deep Fusion Models. CoRR abs/2104.04547 (2021) - 2020
- [i1]Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, William D. Bennett, Dan Kirshner, Sergio Ernesto Wong, Felice C. Lightstone, Jonathan E. Allen:
Improved Protein-ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. CoRR abs/2005.07704 (2020)
2010 – 2019
- 2013
- [j2]Daniel A. Kirshner, Jerome P. Nilmeier, Felice C. Lightstone:
Catalytic site identification - a web server to identify catalytic site structural matches throughout PDB. Nucleic Acids Res. 41(Webserver-Issue): 256-265 (2013)
2000 – 2009
- 2007
- [j1]Jake Gunn Glanville, Dan Kirshner, Nandini Krishnamurthy, Kimmen Sjölander:
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis. Nucleic Acids Res. 35(Web-Server-Issue): 27-32 (2007)
Coauthor Index
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