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2010 – 2019
- 2013
[j16]Naama Tepper, Tomer Shlomi:
An integrated computational approach for metabolic flux analysis coupled with inference of tandem-MS collisional fragments. Bioinform. 29(23): 3045-3052 (2013)- 2012
- [j15]Roi Adadi, Benjamin Volkmer
, Ron Milo, Matthias Heinemann, Tomer Shlomi:
Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters. PLoS Comput. Biol. 8(7) (2012) - 2011
- [j14]Itai Sharon, Sivan Bercovici, Ron Y. Pinter, Tomer Shlomi:
Pathway-Based Functional Analysis of Metagenomes. J. Comput. Biol. 18(3): 495-505 (2011) - [j13]Tomer Shlomi, Tomer Benyamini, Eyal Gottlieb, Roded Sharan, Eytan Ruppin:
Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect. PLoS Comput. Biol. 7(3) (2011) - 2010
- [j12]Naama Tepper, Tomer Shlomi:
Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways. Bioinform. 26(4): 536-543 (2010) - [j11]Keren Yizhak, Tomer Benyamini, Wolfram Liebermeister, Eytan Ruppin, Tomer Shlomi:
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model. Bioinform. 26(12): 255-260 (2010) - [j10]Hadas Zur, Eytan Ruppin, Tomer Shlomi:
iMAT: an integrative metabolic analysis tool. Bioinform. 26(24): 3140-3142 (2010) - [j9]Oron Vanunu, Oded Magger, Eytan Ruppin, Tomer Shlomi, Roded Sharan:
Associating Genes and Protein Complexes with Disease via Network Propagation. PLoS Comput. Biol. 6(1) (2010) - [c5]Sivan Bercovici, Itai Sharon, Ron Y. Pinter, Tomer Shlomi:
Pathway-Based Functional Analysis of Metagenomes. RECOMB 2010: 50-64
2000 – 2009
- 2009
- [j8]Shira Mintz-Oron, Asaph Aharoni, Eytan Ruppin, Tomer Shlomi:
Network-based prediction of metabolic enzymes' subcellular localization. Bioinform. 25(12) (2009) - 2008
- [b1]Tomer Shlomi:
Functional models and building blocks of metabolic and protein networks. Tel Aviv University, Israel, 2008 - [j7]Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan:
QNet: A Tool for Querying Protein Interaction Networks. J. Comput. Biol. 15(7): 913-925 (2008) - 2007
- [j6]Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter:
Constraint-based functional similarity of metabolic genes: going beyond network topology. Bioinform. 23(16): 2139-2146 (2007) - [j5]Itay Mayrose, Osnat Penn, Elana Erez, Nimrod D. Rubinstein, Tomer Shlomi, Natalia Tarnovitski Freund, Erez M. Bublil, Eytan Ruppin, Roded Sharan, Jonathan M. Gershoni, Eric Martz, Tal Pupko:
Pepitope: epitope mapping from affinity-selected peptides. Bioinform. 23(23): 3244-3246 (2007) - [j4]Ofer Meshi, Tomer Shlomi, Eytan Ruppin:
Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network. BMC Syst. Biol. 1: 1 (2007) - [c4]Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan:
SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. ISMB/ECCB (Supplement of Bioinformatics) 2007: 359-366 - [c3]Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan:
QNet: A Tool for Querying Protein Interaction Networks. RECOMB 2007: 1-15 - 2006
- [j3]Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan:
QPath: a method for querying pathways in a protein-protein interaction network. BMC Bioinform. 7: 199 (2006) - [j2]Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker:
A direct comparison of protein interaction confidence assignment schemes. BMC Bioinform. 7: 360 (2006) - [j1]Yonatan Bilu, Tomer Shlomi, Naama Barkai, Eytan Ruppin:
Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States. PLoS Comput. Biol. 2(8) (2006) - [c2]Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter:
Flux-Based vs. Topology-Based Similarity of Metabolic Genes. WABI 2006: 274-285 - 2005
- [c1]Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker:
Comparison of Protein-Protein Interaction Confidence Assignment Schemes. Systems Biology and Regulatory Genomics 2005: 39-50
Coauthor Index
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