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ORCIDAlexander S. Rose
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- affiliation: Mol* Consortium, San Diego, CA, USA
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2020 – today
- 2023
[j21]Aliaksei Chareshneu
, Adam Midlik, Crina-Maria Ionescu, Alexander S. Rose, Vladimír Horský, Alessio Cantara, Radka Svobodová Vareková, Karel Berka, David Sehnal:
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations. Nucleic Acids Res. 51(W1): 326-330 (2023)- 2022
- [j20]Michelle Kampfrath, René Staritzbichler, Guillermo Pérez Hernández, Alexander S. Rose, Johanna K. S. Tiemann, Gerik Scheuermann, Daniel Wiegreffe, Peter W. Hildebrand:
MDsrv: visual sharing and analysis of molecular dynamics simulations. Nucleic Acids Res. 50(W1): 483-489 (2022) - [i1]Michelle Kampfrath, René Staritzbichler, Guillermo Pérez Hernández, Alexander S. Rose, Johanna K. S. Tiemann, Gerik Scheuermann, Daniel Wiegreffe, Peter W. Hildebrand:
MDsrv - visual sharing and analysis of molecular dynamics simulations. CoRR abs/2203.13658 (2022) - 2021
- [j19]Karsten Schatz, Juan José Franco-Moreno, Marco Schäfer, Alexander S. Rose, Valerio Ferrario, Jürgen Pleiss, Pere-Pau Vázquez, Thomas Ertl, Michael Krone:
Visual Analysis of Large-Scale Protein-Ligand Interaction Data. Comput. Graph. Forum 40(6): 394-408 (2021) - [j18]Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Li Chen, Gregg V. Crichlow, Cole H. Christie, Kenneth Dalenberg, Luigi Di Costanzo, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Sai Ganesan, David S. Goodsell, Sutapa Ghosh, Rachel Kramer Green, Vladimir Guranovic, Dmytro Guzenko, Brian P. Hudson, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Harry Namkoong, Ezra Peisach, Irina Persikova, Christopher Randle, Alexander S. Rose, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Yi-Ping Tao, Maria Voigt, John D. Westbrook, Jasmine Young, Christine Zardecki, Marina Zhuravleva:
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Nucleic Acids Res. 49(Database-Issue): D437-D451 (2021) - [j17]David Sehnal, Sebastian Bittrich, Mandar S. Deshpande, Radka Svobodová Vareková, Karel Berka, Václav Bazgier, Sameer Velankar, Stephen K. Burley, Jaroslav Koca, Alexander S. Rose:
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Res. 49(Webserver-Issue): 431-437 (2021) - 2020
- [j16]David Sehnal, Sebastian Bittrich, Sameer Velankar, Jaroslav Koca, Radka Svobodová Vareková, Stephen K. Burley, Alexander S. Rose:
BinaryCIF and CIFTools - Lightweight, efficient and extensible macromolecular data management. PLoS Comput. Biol. 16(10) (2020) - [j15]Sebastian Bittrich, Stephen K. Burley, Alexander S. Rose:
Real-time structural motif searching in proteins using an inverted index strategy. PLoS Comput. Biol. 16(12) (2020)
2010 – 2019
- 2019
- [j14]Stephen K. Burley, Helen M. Berman, Charmi Bhikadiya, Chunxiao Bi, Li Chen, Luigi Di Costanzo, Cole H. Christie, Kenneth Dalenberg, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic, Dmytro Guzenko, Brian P. Hudson, Tara Kalro, Yuhe Liang, Robert Lowe, Harry Namkoong, Ezra Peisach, Irina Periskova, Andreas Prlic, Christopher Randle, Alexander S. Rose, Peter W. Rose, Raul Sala, Monica Sekharan, Chenghua Shao, Lihua Tan, Yi-Ping Tao, Yana Valasatava, Maria Voigt, John D. Westbrook, Jesse Woo, Huanwang Yang, Jasmine Young, Marina Zhuravleva, Christine Zardecki:
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Res. 47(Database-Issue): D464-D474 (2019) - 2018
- [j13]Hai Nguyen, David A. Case, Alexander S. Rose:
NGLview-interactive molecular graphics for Jupyter notebooks. Bioinform. 34(7): 1241-1242 (2018) - [j12]Alexander S. Rose, Anthony R. Bradley, Yana Valasatava, Jose M. Duarte, Andreas Prlic, Peter W. Rose:
NGL viewer: web-based molecular graphics for large complexes. Bioinform. 34(21): 3755-3758 (2018) - [j11]Johanna K. S. Tiemann, Alexander S. Rose, Jochen Ismer, Mitra D. Darvish, Tarek Hilal, Christian M. T. Spahn, Peter W. Hildebrand:
FragFit: a web-application for interactive modeling of protein segments into cryo-EM density maps. Nucleic Acids Res. 46(Webserver-Issue): W310-W314 (2018) - [c3]David Sehnal, Alexander S. Rose, Jaroslav Koca, Stephen K. Burley, Sameer Velankar:
Mol*: Towards a Common Library and Tools for Web Molecular Graphics. MolVa@EuroVis 2018: 29-33 - 2017
- [j10]José Jiménez, Stefan Doerr, Gerard Martínez-Rosell, Alexander S. Rose, Gianni De Fabritiis:
DeepSite: protein-binding site predictor using 3D-convolutional neural networks. Bioinform. 33(19): 3036-3042 (2017) - [j9]Jochen Ismer, Alexander S. Rose, Johanna K. S. Tiemann, Peter W. Hildebrand:
A fragment based method for modeling of protein segments into cryo-EM density maps. BMC Bioinform. 18(1): 475 (2017) - [j8]Peter W. Rose, Andreas Prlic, Ali Altunkaya, Chunxiao Bi, Anthony R. Bradley, Cole H. Christie, Luigi Di Costanzo, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Rachel Kramer Green, David S. Goodsell, Brian P. Hudson, Tara Kalro, Robert Lowe, Ezra Peisach, Christopher Randle, Alexander S. Rose, Chenghua Shao, Yi-Ping Tao, Yana Valasatava, Maria Voigt, John D. Westbrook, Jesse Woo, Huanwang Yang, Jasmine Young, Christine Zardecki, Helen M. Berman, Stephen K. Burley:
The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Res. 45(Database-Issue): D271-D281 (2017) - [j7]Anthony R. Bradley, Alexander S. Rose, Antonín Pavelka, Yana Valasatava, Jose M. Duarte, Andreas Prlic, Peter W. Rose:
MMTF - An efficient file format for the transmission, visualization, and analysis of macromolecular structures. PLoS Comput. Biol. 13(6) (2017) - [c2]Naif Alharbi, Mohammad Alharbi, Xavier Martinez, Michael Krone, Alexander S. Rose, Marc Baaden, Robert S. Laramee, Matthieu Chavent:
Molecular Visualization of Computational Biology Data: A Survey of Surveys. EuroVis (Short Papers) 2017: 133-137 - 2016
- [j6]Jochen Ismer, Alexander S. Rose, Johanna K. S. Tiemann, Andrean Goede, Robert Preissner, Peter W. Hildebrand:
SL2: an interactive webtool for modeling of missing segments in proteins. Nucleic Acids Res. 44(Webserver-Issue): W390-W394 (2016) - [c1]Alexander S. Rose, Anthony R. Bradley, Yana Valasatava, Jose M. Duarte, Andreas Prlic, Peter W. Rose:
Web-based molecular graphics for large complexes. Web3D 2016: 185-186 - 2015
- [j5]Alexander S. Rose, Peter W. Hildebrand:
NGL Viewer: a web application for molecular visualization. Nucleic Acids Res. 43(Webserver-Issue): W576-W579 (2015) - 2014
- [j4]Alexander S. Rose, Dominic Theune, Andrean Goede, Peter Werner Hildebrand:
MP: PD - a data base of internal packing densities, internal packing defects and internal waters of helical membrane proteins. Nucleic Acids Res. 42(Database-Issue): 347-351 (2014) - 2013
- [j3]Jochen Ismer, Alexander S. Rose, Johanna K. S. Tiemann, Andrean Goede, Kristian Rother, Peter Werner Hildebrand:
Voronoia4RNA - a database of atomic packing densities of RNA structures and their complexes. Nucleic Acids Res. 41(Database-Issue): 280-284 (2013) - 2010
- [j2]Alexander S. Rose, Andrean Goede, Peter Werner Hildebrand:
MPlot - a server to analyze and visualize tertiary structure contacts and geometrical features of helical membrane proteins. Nucleic Acids Res. 38(Web-Server-Issue): 602-608 (2010)
2000 – 2009
- 2009
- [j1]Alexander S. Rose, Stephan Lorenzen, Andrean Goede, Björn A. Grüning, Peter Werner Hildebrand:
RHYTHM - a server to predict the orientation of transmembrane helices in channels and membrane-coils. Nucleic Acids Res. 37(Web-Server-Issue): 575-580 (2009)
Coauthor Index
aka: Peter W. Hildebrand
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