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2020 – today
- 2023
[j57]Ziyu Li
, Qiuyun Fan, Berkin Bilgic, Guangzhi Wang, Wenchuan Wu, Jonathan R. Polimeni, Karla L. Miller, Susie Yi Huang, Qiyuan Tian:
Diffusion MRI data analysis assisted by deep learning synthesized anatomical images (DeepAnat). Medical Image Anal. 86: 102744 (2023)- 2022
- [j56]Qiyuan Tian, Ziyu Li, Qiuyun Fan, Jonathan R. Polimeni, Berkin Bilgic, David H. Salat, Susie Yi Huang:
SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. NeuroImage 253: 119033 (2022) - [j55]Anna I. Blazejewska, Thomas Witzel, Jesper L. R. Andersson, Lawrence L. Wald, Jonathan R. Polimeni:
Slice-direction geometric distortion evaluation and correction with reversed slice-select gradient acquisitions. NeuroImage 264: 119701 (2022) - 2021
- [j54]Rajat Kumar, Liang Tan, Alan Kriegstein, Andrew Lithen, Jonathan R. Polimeni, Lilianne R. Mujica-Parodi, Helmut H. Strey:
Ground-truth "resting-state" signal provides data-driven estimation and correction for scanner distortion of fMRI time-series dynamics. NeuroImage 227: 117584 (2021) - [j53]Qiyuan Tian, Natalia Zaretskaya, Qiuyun Fan, Chanon Ngamsombat, Berkin Bilgic, Jonathan R. Polimeni, Susie Yi Huang:
Improved cortical surface reconstruction using sub-millimeter resolution MPRAGE by image denoising. NeuroImage 233: 117946 (2021) - [j52]Fuyixue Wang, Zijing Dong, Lawrence L. Wald, Jonathan R. Polimeni, Kawin Setsompop:
Simultaneous pure T2 and varying T2′-weighted BOLD fMRI using Echo Planar Time-resolved Imaging for mapping cortical-depth dependent responses. NeuroImage 245: 118641 (2021) - [j51]Jingyuan E. Chen, Gary H. Glover, Nina E. Fultz, Bruce R. Rosen, Jonathan R. Polimeni, Laura D. Lewis:
Investigating mechanisms of fast BOLD responses: The effects of stimulus intensity and of spatial heterogeneity of hemodynamics. NeuroImage 245: 118658 (2021) - [i3]Qiyuan Tian, Ziyu Li, Qiuyun Fan, Chanon Ngamsombat, Yuxin Hu, Congyu Liao, Fuyixue Wang, Kawin Setsompop, Jonathan R. Polimeni, Berkin Bilgic, Susie Yi Huang:
SRDTI: Deep learning-based super-resolution for diffusion tensor MRI. CoRR abs/2102.09069 (2021) - [i2]Qiyuan Tian, Ziyu Li, Qiuyun Fan, Jonathan R. Polimeni, Berkin Bilgic, David H. Salat, Susie Yi Huang:
SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. CoRR abs/2111.07220 (2021) - 2020
- [j50]Jonas Bause, Jonathan R. Polimeni, Johannes Stelzer, Myung-Ho In, Philipp Ehses, Pablo Kraemer-Fernandez, Ali Aghaeifar, Eric Lacosse, Rolf Pohmann, Klaus Scheffler:
Impact of prospective motion correction, distortion correction methods and large vein bias on the spatial accuracy of cortical laminar fMRI at 9.4 Tesla. NeuroImage 208: 116434 (2020) - [j49]Shahin Nasr, Cristen LaPierre, Christopher E. Vaughn, Thomas Witzel, Jason P. Stockmann, Jonathan R. Polimeni:
In vivo functional localization of the temporal monocular crescent representation in human primary visual cortex. NeuroImage 209: 116516 (2020) - [j48]Jingyuan E. Chen, Laura D. Lewis, Catie Chang, Qiyuan Tian, Nina E. Fultz, Ned A. Ohringer, Bruce R. Rosen, Jonathan R. Polimeni:
Resting-state "physiological networks". NeuroImage 213: 116707 (2020) - [j47]Qiyuan Tian, Berkin Bilgic, Qiuyun Fan, Congyu Liao, Chanon Ngamsombat, Yuxin Hu, Thomas Witzel, Kawin Setsompop, Jonathan R. Polimeni, Susie Yi Huang:
DeepDTI: High-fidelity six-direction diffusion tensor imaging using deep learning. NeuroImage 219: 117017 (2020) - [j46]Natalia Zaretskaya, Jonas Bause, Jonathan R. Polimeni, Pablo R. Grassi, Klaus Scheffler, Andreas M. Bartels:
Eye-selective fMRI activity in human primary visual cortex: Comparison between 3 T and 9.4 T, and effects across cortical depth. NeuroImage 220: 117078 (2020)
2010 – 2019
- 2019
- [j45]Jingyuan E. Chen, Jonathan R. Polimeni, Saskia Bollmann, Gary H. Glover:
On the analysis of rapidly sampled fMRI data. NeuroImage 188: 807-820 (2019) - [j44]Anna I. Blazejewska, Bruce Fischl, Lawrence L. Wald, Jonathan R. Polimeni:
Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. NeuroImage 189: 601-614 (2019) - [j43]Olivia Viessmann, Klaus Scheffler, Marta Bianciardi, Lawrence L. Wald, Jonathan R. Polimeni:
Dependence of resting-state fMRI fluctuation amplitudes on cerebral cortical orientation relative to the direction of B0 and anatomical axes. NeuroImage 196: 337-350 (2019) - [j42]David G. Norris, Jonathan R. Polimeni:
Laminar (f)MRI: A short history and future prospects. NeuroImage 197: 643-649 (2019) - 2018
- [j41]Seul Lee, Jonathan R. Polimeni, Collin M. Price, Brian L. Edlow, Jennifer A. McNab:
Characterizing Signals Within Lesions and Mapping Brain Network Connectivity After Traumatic Axonal Injury: A 7 Tesla Resting-State FMRI Study. Brain Connect. 8(5): 288-298 (2018) - [j40]Fa-Hsuan Lin, Jonathan R. Polimeni, Jo-Fu Lotus Lin, Kevin Wen-Kai Tsai, Ying-Hua Chu, Pu-Yeh Wu, Yi-Tien Li, Yi-Cheng Hsu, Shang-Yueh Tsai, Wen-Jui Kuo:
Relative latency and temporal variability of hemodynamic responses at the human primary visual cortex. NeuroImage 164: 194-201 (2018) - [j39]Natalia Zaretskaya, Bruce Fischl, Martin Reuter, Ville Renvall, Jonathan R. Polimeni:
Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. NeuroImage 165: 11-26 (2018) - [j38]Jonathan R. Polimeni, Kâmil Uludag:
Neuroimaging with ultra-high field MRI: Present and future. NeuroImage 168: 1-6 (2018) - [j37]Jonathan R. Polimeni, Ville Renvall, Natalia Zaretskaya, Bruce Fischl:
Analysis strategies for high-resolution UHF-fMRI data. NeuroImage 168: 296-320 (2018) - [j36]Roberta Sclocco, Florian Beissner, Marta Bianciardi, Jonathan R. Polimeni, Vitaly Napadow:
Challenges and opportunities for brainstem neuroimaging with ultrahigh field MRI. NeuroImage 168: 412-426 (2018) - [j35]Laura D. Lewis, Kawin Setsompop, Bruce R. Rosen, Jonathan R. Polimeni:
Stimulus-dependent hemodynamic response timing across the human subcortical-cortical visual pathway identified through high spatiotemporal resolution 7T fMRI. NeuroImage 181: 279-291 (2018) - [i1]Berkin Bilgic, Itthi Chatnuntawech, Mary Kate Manhard, Qiyuan Tian, Congyu Liao, Stephen F. Cauley, Susie Yi Huang, Jonathan R. Polimeni, Lawrence L. Wald, Kawin Setsompop:
Highly Accelerated Multishot EPI through Synergistic Combination of Machine Learning and Joint Reconstruction. CoRR abs/1808.02814 (2018) - 2017
- [j34]Qiuyun Fan, Aapo Nummenmaa, Jonathan R. Polimeni, Thomas Witzel, Susie Yi Huang, Van J. Wedeen, Bruce R. Rosen, Lawrence L. Wald:
HIgh b-value and high Resolution Integrated Diffusion (HIBRID) imaging. NeuroImage 150: 162-176 (2017) - [j33]Anna Blazejewska, Himanshu Bhat, Lawrence L. Wald, Jonathan R. Polimeni:
Reduction of across-run variability of temporal SNR in accelerated EPI time-series data through FLEET-based robust autocalibration. NeuroImage 152: 348-359 (2017) - [j32]Lawrence L. Wald, Jonathan R. Polimeni:
Impacting the effect of fMRI noise through hardware and acquisition choices - Implications for controlling false positive rates. NeuroImage 154: 15-22 (2017) - [j31]Tong Tong, Iman Aganj, Tian Ge, Jonathan R. Polimeni, Bruce Fischl:
Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. NeuroImage 158: 346-355 (2017) - 2016
- [j30]Qiuyun Fan, Thomas Witzel, Aapo Nummenmaa, Koene R. A. Van Dijk, John D. Van Horn, Michelle K. Drews, Leah H. Somerville, Margaret A. Sheridan, Rosario M. Santillana, Jenna Snyder, Trey Hedden, Emily E. Shaw, Marisa O. Hollinshead, Ville Renvall, Roberta Zanzonico, Boris Keil, Stephen F. Cauley, Jonathan R. Polimeni, M. Dylan Tisdall, Randy L. Buckner, Van J. Wedeen, Lawrence L. Wald, Arthur W. Toga, Bruce R. Rosen:
MGH-USC Human Connectome Project datasets with ultra-high b-value diffusion MRI. NeuroImage 124: 1108-1114 (2016) - [j29]Berkin Bilgic, Luke Xie, Russell Dibb, Christian Langkammer, Aysegul Mutluay, Huihui Ye, Jonathan R. Polimeni, Jean Augustinack, Chunlei Liu, Lawrence L. Wald, Kawin Setsompop:
Rapid multi-orientation quantitative susceptibility mapping. NeuroImage 125: 1131-1141 (2016) - [j28]Ville Renvall, Thomas Witzel, Lawrence L. Wald, Jonathan R. Polimeni:
Automatic cortical surface reconstruction of high-resolution T1 echo planar imaging data. NeuroImage 134: 338-354 (2016) - [j27]Jyrki Ahveninen, Wei-Tang Chang, Samantha Huang, Boris Keil, Norbert Kopco, Stephanie Rossi, Giorgio Bonmassar, Thomas Witzel, Jonathan R. Polimeni:
Intracortical depth analyses of frequency-sensitive regions of human auditory cortex using 7T fMRI. NeuroImage 143: 116-127 (2016) - 2015
- [j26]Sungho Tak, Jonathan R. Polimeni, Danny J. J. Wang, Lirong Yan, J. Jean Chen:
Associations of Resting-State fMRI Functional Connectivity with Flow-BOLD Coupling and Regional Vasculature. Brain Connect. 5(3): 137-146 (2015) - [j25]Marta Bianciardi, Nicola Toschi, Brian L. Edlow, Cornelius Eichner, Kawin Setsompop, Jonathan R. Polimeni, Emery N. Brown, Hannah C. Kinney, Bruce R. Rosen, Lawrence L. Wald:
Toward an In Vivo Neuroimaging Template of Human Brainstem Nuclei of the Ascending Arousal, Autonomic, and Motor Systems. Brain Connect. 5(10): 597-607 (2015) - [c6]William Scott Hoge, Jonathan R. Polimeni:
A dual-polarity grappa kernel for the robust reconstruction of accelerated EPI data. ISBI 2015: 1244-1247 - 2014
- [j24]Qiuyun Fan, Aapo Nummenmaa, Thomas Witzel, Roberta Zanzonico, Boris Keil, Stephen F. Cauley, Jonathan R. Polimeni, M. Dylan Tisdall, Koene R. A. Van Dijk, Randy L. Buckner, Van J. Wedeen, Bruce R. Rosen, Lawrence L. Wald:
Investigating the Capability to Resolve Complex White Matter Structures with High b-Value Diffusion Magnetic Resonance Imaging on the MGH-USC Connectom Scanner. Brain Connect. 4(9): 718-726 (2014) - [j23]Sungho Tak, Danny J. J. Wang, Jonathan R. Polimeni, Lirong Yan, J. Jean Chen:
Dynamic and static contributions of the cerebrovasculature to the resting-state BOLD signal. NeuroImage 84: 672-680 (2014) - [j22]Kyoko Fujimoto, Jonathan R. Polimeni, André J. W. van der Kouwe, Martin Reuter, Tobias Kober, Thomas Benner, Bruce Fischl, Lawrence L. Wald:
Quantitative comparison of cortical surface reconstructions from MP2RAGE and multi-echo MPRAGE data at 3 and 7 T. NeuroImage 90: 60-73 (2014) - [j21]Fa-Hsuan Lin, Thomas Witzel, Tommi Raij, Jyrki Ahveninen, Kevin Wen-Kai Tsai, Ying-Hua Chu, Wei-Tang Chang, Aapo Nummenmaa, Jonathan R. Polimeni, Wen-Jui Kuo, Jen-Chuen Hsieh, Bruce R. Rosen, John W. Belliveau:
Corrigendum to "fMRI hemodynamics accurately reflects neuronal timing in the human brain measured by MEG" [Neuroimage 78 (2013) 372-384]. NeuroImage 95: 344 (2014) - [j20]Marjorie Villien, Hsiao-Ying Wey, Joseph B. Mandeville, Ciprian Catana, Jonathan R. Polimeni, Christin Y. M. Sander, Nicole R. Zürcher, Daniel B. Chonde, Joanna S. Fowler, Bruce R. Rosen, Jacob M. Hooker:
Dynamic functional imaging of brain glucose utilization using fPET-FDG. NeuroImage 100: 192-199 (2014) - [j19]Günther Grabner, Benedikt A. Poser, Kyoko Fujimoto, Jonathan R. Polimeni, Lawrence L. Wald, Siegfried Trattnig, Ivan Toni, Markus Barth:
A study-specific fMRI normalization approach that operates directly on high resolution functional EPI data at 7 Tesla. NeuroImage 100: 710-714 (2014) - 2013
- [j18]Jennifer A. McNab, Jonathan R. Polimeni, Ruopeng Wang, Jean Augustinack, Kyoko Fujimoto, Allison Stevens, Thomas Janssens, Reza Farivar, Rebecca D. Folkerth, Wim Vanduffel, Lawrence L. Wald:
Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex. NeuroImage 69: 87-100 (2013) - [j17]Wei-Tang Chang, Aapo Nummenmaa, Thomas Witzel, Jyrki Ahveninen, Samantha Huang, Kevin Wen-Kai Tsai, Ying-Hua Chu, Jonathan R. Polimeni, John W. Belliveau, Fa-Hsuan Lin:
Whole-head rapid fMRI acquisition using echo-shifted magnetic resonance inverse imaging. NeuroImage 78: 325-338 (2013) - [j16]Fa-Hsuan Lin, Thomas Witzel, Tommi Raij, Jyrki Ahveninen, Kevin Wen-Kai Tsai, Ying-Hua Chu, Wei-Tang Chang, Aapo Nummenmaa, Jonathan R. Polimeni, Wen-Jui Kuo, Jen-Chuen Hsieh, Bruce R. Rosen, John W. Belliveau:
fMRI hemodynamics accurately reflects neuronal timing in the human brain measured by MEG. NeuroImage 78: 372-384 (2013) - [j15]Matthew F. Glasser, Stamatios N. Sotiropoulos, J. Anthony Wilson, Timothy S. Coalson, Bruce Fischl, Jesper L. R. Andersson, Junqian Xu, Saâd Jbabdi, Matthew A. Webster, Jonathan R. Polimeni, David C. Van Essen, Mark Jenkinson:
The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage 80: 105-124 (2013) - [j14]Jennifer A. McNab, Jonathan R. Polimeni, Ruopeng Wang, Jean Augustinack, Kyoko Fujimoto, Allison Stevens, Christina Triantafyllou, Thomas Janssens, Reza Farivar, Rebecca D. Folkerth, Wim Vanduffel, Lawrence L. Wald:
Corrigendum to "Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex" [NeuroImage 69 (2013) 87-100]. NeuroImage 81: 505 (2013) - [j13]Herve Lombaert, Leo J. Grady, Jonathan R. Polimeni, Farida Cheriet:
FOCUSR: Feature Oriented Correspondence Using Spectral Regularization-A Method for Precise Surface Matching. IEEE Trans. Pattern Anal. Mach. Intell. 35(9): 2143-2160 (2013) - [j12]Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal:
Sparsity-Promoting Calibration for GRAPPA Accelerated Parallel MRI Reconstruction. IEEE Trans. Medical Imaging 32(7): 1325-1335 (2013) - 2012
- [j11]Julien Cohen-Adad, Jonathan R. Polimeni, Karl G. Helmer, Thomas Benner, Jennifer A. McNab, Lawrence L. Wald, Bruce R. Rosen, Caterina Mainero:
T2* mapping and B0 orientation-dependence at 7 T reveal cyto- and myeloarchitecture organization of the human cortex. NeuroImage 60(2): 1006-1014 (2012) - [j10]Thomas Janssens, Boris Keil, Reza Farivar, Jennifer A. McNab, Jonathan R. Polimeni, Annelies Gerits, J. T. Arsenault, Lawrence L. Wald, Wim Vanduffel:
An implanted 8-channel array coil for high-resolution macaque MRI at 3 T. NeuroImage 62(3): 1529-1536 (2012) - [c5]Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal:
Accelerated parallel magnetic resonance imaging reconstruction using joint estimation with a sparse signal model. SSP 2012: 221-224 - 2011
- [j9]Christina Triantafyllou, Jonathan R. Polimeni, Lawrence L. Wald:
Physiological noise and signal-to-noise ratio in fMRI with multi-channel array coils. NeuroImage 55(2): 597-606 (2011) - [c4]Maria Ida Iacono, Nikos Makris, Luca T. Mainardi, John T. Gale, André J. W. van der Kouwe, Azma Mareyam, Jonathan R. Polimeni, Lawrence L. Wald, Bruce Fischl, Emad N. Eskandar, Giorgio Bonmassar:
Atlas-based segmentation for globus pallidus internus targeting on low-resolution MRI. EMBC 2011: 5706-5709 - [c3]Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal:
Combined compressed sensing and parallel mri compared for uniform and random cartesian undersampling of K-space. ICASSP 2011: 553-556 - [c2]Herve Lombaert, Leo J. Grady, Jonathan R. Polimeni, Farida Cheriet:
Fast Brain Matching with Spectral Correspondence. IPMI 2011: 660-673 - [c1]Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal:
Evaluating sparsity penalty functions for combined compressed sensing and parallel MRI. ISBI 2011: 1589-1592 - 2010
- [b1]Leo J. Grady, Jonathan R. Polimeni:
Discrete Calculus - Applied Analysis on Graphs for Computational Science. Springer 2010, ISBN 978-1-84996-289-6, pp. I-XVI, 1-366 - [j8]Mukund Balasubramanian, Jonathan R. Polimeni, Eric L. Schwartz:
Near-isometric flattening of brain surfaces. NeuroImage 51(2): 694-703 (2010) - [j7]Jonathan R. Polimeni, Bruce Fischl, Douglas N. Greve, Lawrence L. Wald:
Laminar analysis of 7 T BOLD using an imposed spatial activation pattern in human V1. NeuroImage 52(4): 1334-1346 (2010)
2000 – 2009
- 2009
- [j6]Oliver Hinds, Jonathan R. Polimeni, Niranjini Rajendran, Mukund Balasubramanian, Katrin Amunts, Karl Zilles, Eric L. Schwartz, Bruce Fischl, Christina Triantafyllou:
Locating the functional and anatomical boundaries of human primary visual cortex. NeuroImage 46(4): 915-922 (2009) - [j5]Bruce Fischl, Allison Stevens, Niranjini Rajendran, B. T. Thomas Yeo, Douglas N. Greve, Koen Van Leemput, Jonathan R. Polimeni, Sita Kakunoori, Randy L. Buckner, Jennifer L. Pacheco, David H. Salat, Jennifer Melcher, Matthew P. Frosch, Bradley T. Hyman, Patricia Ellen Grant, Bruce R. Rosen, André J. W. van der Kouwe, Graham C. Wiggins, Lawrence L. Wald, Jean Augustinack:
Predicting the location of entorhinal cortex from MRI. NeuroImage 47(1): 8-17 (2009) - [j4]Mukund Balasubramanian, Jonathan R. Polimeni, Eric L. Schwartz:
Exact Geodesics and Shortest Paths on Polyhedral Surfaces. IEEE Trans. Pattern Anal. Mach. Intell. 31(6): 1006-1016 (2009) - 2008
- [j3]Oliver Hinds, Niranjini Rajendran, Jonathan R. Polimeni, Jean C. Augustinack, Graham C. Wiggins, Lawrence L. Wald, H. Diana Rosas, Andreas Potthast, Eric L. Schwartz, Bruce Fischl:
Accurate prediction of V1 location from cortical folds in a surface coordinate system. NeuroImage 39(4): 1585-1599 (2008) - [j2]Fa-Hsuan Lin, Thomas Witzel, Joseph B. Mandeville, Jonathan R. Polimeni, Thomas A. Zeffiro, Douglas N. Greve, Graham C. Wiggins, Lawrence L. Wald, John W. Belliveau:
Event-related single-shot volumetric functional magnetic resonance inverse imaging of visual processing. NeuroImage 42(1): 230-247 (2008) - 2002
- [j1]Mukund Balasubramanian, Jonathan R. Polimeni, Eric L. Schwartz:
The V1-V2-V3 complex: quasiconformal dipole maps in primate striate and extra-striate cortex. Neural Networks 15(10): 1157-1163 (2002)
Coauthor Index
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