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2010 – 2019
- 2019
[j8]Folker Meyer, Saurabh Bagchi, Somali Chaterji
, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L. Trimble, Andreas Wilke:
MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. Briefings Bioinform. 20(4): 1151-1159 (2019)- [j7]Tobias Paczian, William L. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer:
The MG-RAST API explorer: an on-ramp for RESTful query composition. BMC Bioinform. 20(1): 561:1-561:8 (2019) - 2018
- [i1]Folker Meyer, Robert D. Finn, Wolfgang Gerlach, Alex L. Mitchell, Travis Harrison, Andreas Wilke:
On the way to research objects for environmental genomics (or metagenomics). RO 2018 - 2017
- [c8]Ashraf Mahgoub, Paul Wood, Sachandhan Ganesh, Subrata Mitra, Wolfgang Gerlach, Travis Harrison, Folker Meyer, Ananth Grama, Saurabh Bagchi, Somali Chaterji:
Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads. Middleware 2017: 28-40 - 2016
- [j6]Andreas Wilke, Jared Bischof, Wolfgang Gerlach, Elizabeth M. Glass, Travis Harrison, Kevin P. Keegan, Tobias Paczian, William L. Trimble, Saurabh Bagchi, Ananth Grama, Somali Chaterji, Folker Meyer:
The MG-RAST metagenomics database and portal in 2015. Nucleic Acids Res. 44(Database-Issue): 590-594 (2016) - [c7]Caitlin Ross, Misbah Mubarak, John Jenkins, Philip H. Carns, Christopher D. Carothers, Robert B. Ross, Wei Tang, Wolfgang Gerlach, Folker Meyer:
A Case Study in Using Discrete-Event Simulation to Improve the Scalability of MG-RAST. SIGSIM-PADS 2016: 211-220 - 2015
- [j5]Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer:
A RESTful API for Accessing Microbial Community Data for MG-RAST. PLoS Comput. Biol. 11(1) (2015) - [c6]Andreas Wilke, Wolfgang Gerlach, Travis Harrison, Tobias Paczian, Wei Tang, William L. Trimble, Jared Wilkening, Narayan Desai, Folker Meyer:
Shock: Active Storage for Multicloud Streaming Data Analysis. BDC 2015: 68-72 - [c5]Wolfgang Gerlach, Wei Tang, Andreas Wilke, Dan Olson, Folker Meyer:
Container Orchestration for Scientific Workflows. IC2E 2015: 377-378 - 2014
- [c4]Wei Tang, Jared Bischof, Narayan Desai, Kanak Mahadik, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer:
Workload characterization for MG-RAST metagenomic data analytics service in the cloud. IEEE BigData 2014: 56-63 - [c3]Wolfgang Gerlach, Wei Tang, Kevin P. Keegan, Travis Harrison, Andreas Wilke, Jared Bischof, Mark D'Souza, Scott Devoid, Daniel E. Murphy-Olson, Narayan Desai, Folker Meyer:
Skyport: container-based execution environment management for multi-cloud scientific workflows. DataCloud@SC 2014: 25-32 - 2013
- [c2]Wei Tang, Jared Wilkening, Narayan Desai, Wolfgang Gerlach, Andreas Wilke, Folker Meyer:
A scalable data analysis platform for metagenomics. IEEE BigData 2013: 21-26 - 2012
- [b1]Wolfgang Gerlach:
Taxonomic classification of metagenomic sequences. Bielefeld University, 2012
2000 – 2009
- 2009
- [j4]Wolfgang Gerlach, Sebastian Jünemann, Felix Tille, Alexander Goesmann, Jens Stoye:
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinform. 10: 430 (2009) - [j3]Niko Välimäki, Veli Mäkinen, Wolfgang Gerlach, Kashyap Dixit:
Engineering a compressed suffix tree implementation. ACM J. Exp. Algorithmics 14 (2009) - 2007
- [j2]Niko Välimäki, Wolfgang Gerlach, Kashyap Dixit, Veli Mäkinen:
Compressed suffix tree - a basis for genome-scale sequence analysis. Bioinform. 23(5): 629-630 (2007) - [c1]Niko Välimäki, Wolfgang Gerlach, Kashyap Dixit, Veli Mäkinen:
Engineering a Compressed Suffix Tree Implementation. WEA 2007: 217-228 - 2006
- [j1]Wolfgang Gerlach, Robert Giegerich:
GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing. Bioinform. 22(6): 762-764 (2006)
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