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2020 – today
- 2024
[j55]Brent M. Roeder, Xiwei She
, Alexander S. Dakos, Bryan Moore, Robert T. Wicks, Mark R. Witcher, Daniel E. Couture, Adrian W. Laxton, Heidi M. Munger Clary, Gautam Popli, Charles Liu, Brian Lee, Christianne Heck, George Nune, Hui Gong, Susan Shaw, Vasilis Z. Marmarelis, Theodore W. Berger, Sam A. Deadwyler, Dong Song, Robert E. Hampson:
Developing a hippocampal neural prosthetic to facilitate human memory encoding and recall of stimulus features and categories. Frontiers Comput. Neurosci. 18 (2024)- 2022
- [j54]Xiwei She, Theodore W. Berger, Dong Song:
A Double-Layer Multi-Resolution Classification Model for Decoding Spatiotemporal Patterns of Spikes With Small Sample Size. Neural Comput. 34(1): 219-254 (2022) - 2021
- [j53]Duy-Tan J. Pham, Gene J. Yu, Jean-Marie C. Bouteiller, Theodore W. Berger:
Bridging Hierarchies in Multi-Scale Models of Neural Systems: Look-Up Tables Enable Computationally Efficient Simulations of Non-linear Synaptic Dynamics. Frontiers Comput. Neurosci. 15: 733155 (2021) - 2020
- [j52]Clayton S. Bingham, Adam Mergenthal, Jean-Marie C. Bouteiller, Dong Song, Gianluca Lazzi, Theodore W. Berger:
ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons and an Application to Electroceutical Modeling. Frontiers Comput. Neurosci. 14: 13 (2020) - [j51]Zane Z. Chou, Gene J. Yu, Theodore W. Berger:
Generation of Granule Cell Dendritic Morphologies by Estimating the Spatial Heterogeneity of Dendritic Branching. Frontiers Comput. Neurosci. 14: 23 (2020) - [j50]Clayton S. Bingham, Javad Paknahad, Christopher B. C. Girard, Kyle Loizos, Jean-Marie C. Bouteiller, Dong Song, Gianluca Lazzi, Theodore W. Berger:
Admittance Method for Estimating Local Field Potentials Generated in a Multi-Scale Neuron Model of the Hippocampus. Frontiers Comput. Neurosci. 14: 72 (2020) - [j49]Adam Mergenthal, Jean-Marie C. Bouteiller, Gene J. Yu, Theodore W. Berger:
A Computational Model of the Cholinergic Modulation of CA1 Pyramidal Cell Activity. Frontiers Comput. Neurosci. 14: 75 (2020) - [j48]Gene J. Yu, Jean-Marie C. Bouteiller, Theodore W. Berger:
Topographic Organization of Correlation Along the Longitudinal and Transverse Axes in Rat Hippocampal CA3 Due to Excitatory Afferents. Frontiers Comput. Neurosci. 14: 588881 (2020) - [c102]Jiaan Zhu, Jian Loong Lim Jethro, Bowen Li, Adam Mergenthal, Adnan A. Rayes, Hejun Tang, Theodore W. Berger, Jean-Marie C. Bouteiller:
A Computational Model of Mitochondria Motility in Axons. EMBC 2020: 2287-2290 - [c101]Xiwei She, Brian S. Robinson, Theodore W. Berger, Dong Song:
Accelerating Estimation of a Multi-Input Multi-Output Model of the Hippocampus with a Parallel Computing Strategy. EMBC 2020: 2479-2482 - [c100]Bryan J. Moore, Theodore W. Berger, Dong Song:
Validation of a Convolutional Neural Network Model for Spike Transformation Using a Generalized Linear Model. EMBC 2020: 3236-3239
2010 – 2019
- 2019
- [j47]Kunling Geng, Dae C. Shin, Dong Song, Robert E. Hampson, Samuel A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis:
Multi-Input, Multi-Output Neuronal Mode Network Approach to Modeling the Encoding Dynamics and Functional Connectivity of Neural Systems. Neural Comput. 31(7): 1327-1355 (2019) - [j46]Gene J. Yu, Jean-Marie C. Bouteiller, Dong Song, Theodore W. Berger:
Axonal Anatomy Optimizes Spatial Encoding in the Rat Entorhinal-Dentate System: A Computational Study. IEEE Trans. Biomed. Eng. 66(10): 2728-2739 (2019) - [c99]Jean-Marie C. Bouteiller, Adam R. Mergenthal, Eric Y. Hu, Theodore W. Berger:
Pathogenic Processes Underlying Alzheimer's Disease: Modeling the Effects of Amyloid Beta on Synaptic Transmission. EMBC 2019: 1956-1959 - [c98]Gene J. Yu, Zhicheng Feng, Theodore W. Berger:
Network Activity Due to Topographic Organization of Schaffer Collaterals in a Large-Scale Model of Rat CA1. EMBC 2019: 2977-2980 - 2018
- [j45]Eric Y. Hu, Adam Mergenthal, Clayton S. Bingham, Dong Song, Jean-Marie Bouteiller, Theodore W. Berger:
A Glutamatergic Spine Model to Enable Multi-Scale Modeling of Nonlinear Calcium Dynamics. Frontiers Comput. Neurosci. 12: 58 (2018) - [j44]Kunling Geng, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis:
Mechanism-Based and Input-Output Modeling of the Key Neuronal Connections and Signal Transformations in the CA3-CA1 Regions of the Hippocampus. Neural Comput. 30(1) (2018) - [j43]Roman A. Sandler, Kunling Geng, Dong Song, Robert E. Hampson, Mark R. Witcher, Sam A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis:
Designing Patient-Specific Optimal Neurostimulation Patterns for Seizure Suppression. Neural Comput. 30(5) (2018) - [j42]Zhitong Qiao, Yan Han, Xiaoxia Han, Han Xu, Will X. Y. Li, Dong Song, Theodore W. Berger, Ray C. C. Cheung:
ASIC Implementation of a Nonlinear Dynamical Model for Hippocampal Prosthesis. Neural Comput. 30(9) (2018) - [j41]Clayton S. Bingham, Kyle Loizos, Gene J. Yu, Andrew Gilbert, Jean-Marie C. Bouteiller, Dong Song, Gianluca Lazzi, Theodore W. Berger:
Model-Based Analysis of Electrode Placement and Pulse Amplitude for Hippocampal Stimulation. IEEE Trans. Biomed. Eng. 65(10): 2278-2289 (2018) - [c97]Clayton S. Bingham, Jean-Marie C. Bouteiller, Dong Song, Theodore W. Berger:
Graph-Based Models of Cortical Axons for the Prediction of Neuronal Response to Extracellular Electrical Stimulation. EMBC 2018: 1380-1383 - [c96]Sahar Elyahoodayan, Theodore W. Berger, Dong Song:
A Closed-Loop Multi-Channel Asynchronous Neurostimulator to Mimic Neural Code for Cognitive Prosthesis. EMBC 2018: 1388-1391 - [c95]Adam Mergenthal, Jean-Marie C. Bouteiller, Theodore W. Berger:
Cholinergic Modulation of CA1 Pyramidal Cells via M1 Muscarinic Receptor Activation: A Computational Study at Physiological and Supraphysiological Levels. EMBC 2018: 1396-1399 - [c94]Huijing Xu, Ahuva W. Hirschberg, Kee Scholten, Ellis Meng, Theodore W. Berger, Dong Song:
Application of Parylene-Based Flexible Multi-Electrode Array for Recording From Subcortical Brain Regions From Behaving Rats. EMBC 2018: 4599-4602 - [c93]Zane Z. Chou, Gene J. Yu, Theodore W. Berger:
Point Process Filtering Estimates of Branching Rate for Neural Dendritic Morphology Generation. EMBC 2018: 5854-5857 - [c92]Eric Y. Hu, Gene J. Yu, Dong Song, Jean-Marie C. Bouteiller, Theodore W. Berger:
Modeling Nonlinear Synaptic Dynamics: A Laguerre-Volterra Network Framework for Improved Computational Efficiency in Large Scale Simulations. EMBC 2018: 6129-6132 - 2017
- [c91]Dong Song, Xiwei She, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Multi-resolution multi-trial sparse classification model for decoding visual memories from hippocampal spikes in human. EMBC 2017: 1046-1049 - [c90]Huijing Xu, Ahuva Weltman, Kee Scholten, Ellis Meng, Theodore W. Berger, Dong Song:
Chronic multi-region recording from the rat hippocampus in vivo with a flexible Parylene-based multi-electrode array. EMBC 2017: 1716-1719 - [c89]Uldric A. Antao, John Choma Ming Hsieh, Theodore W. Berger:
A 9-nW on-chip constant subthreshold CMOS transconductance bias with fine-tuning. ISCAS 2017: 1-4 - 2016
- [j40]Will X. Y. Li, Ray C. C. Cheung, Yao Xin, Dong Song, Theodore W. Berger:
An FPGA-Based High-Performance Neural Ensemble Spiking Activity Simulator Utilizing Generalized Volterra Kernel and Complexity Analysis. J. Circuits Syst. Comput. 25(1): 1640004:1-1640004:21 (2016) - [j39]Brian S. Robinson, Theodore W. Berger, Dong Song:
Identification of Stable Spike-Timing-Dependent Plasticity from Spiking Activity with Generalized Multilinear Modeling. Neural Comput. 28(11): 2320-2351 (2016) - [j38]Phillip J. Hendrickson, Gene J. Yu, Dong Song, Theodore W. Berger:
A Million-Plus Neuron Model of the Hippocampal Dentate Gyrus: Critical Role for Topography in Determining Spatiotemporal Network Dynamics. IEEE Trans. Biomed. Eng. 63(1): 199-209 (2016) - [c88]Gene J. Yu, Dong Song, Theodore W. Berger:
Place field detection using grid-based clustering in a large-scale computational model of the rat dentate gyrus. EMBC 2016: 1405-1408 - [c87]Phillip J. Hendrickson, Clayton S. Bingham, Dong Song, Theodore W. Berger:
A bi-directional communication paradigm between parallel NEURON and an external non-neuron process. EMBC 2016: 1413-1416 - [c86]Dong Song, Robert E. Hampson, Brian S. Robinson, Vasilis Z. Marmarelis, Sam A. Deadwyler, Theodore W. Berger:
Decoding memory features from hippocampal spiking activities using sparse classification models. EMBC 2016: 1620-1623 - [c85]Brian S. Robinson, Theodore W. Berger, Dong Song:
Monte Carlo validation of spike-timing-dependent plasticity identification from spiking activity. EMBC 2016: 1624-1627 - [c84]Pen-Ning Yu, Shokofeh A. Naiini, Christi N. Heck, Charles Yu Liu, Dong Song, Theodore W. Berger:
A sparse Laguerre-Volterra autoregressive model for seizure prediction in temporal lobe epilepsy. EMBC 2016: 1664-1667 - [c83]Clayton S. Bingham, Kyle Loizos, Gene J. Yu, Andrew Gilbert, Jean-Marie Bouteiller, Dong Song, Gianluca Lazzi, Theodore W. Berger:
A large-scale detailed neuronal model of electrical stimulation of the dentate gyrus and perforant path as a platform for electrode design and optimization. EMBC 2016: 2794-2797 - [c82]Huijing Xu, Ahuva Weltman, Min-Chi Hsiao, Kee Scholten, Ellis Meng, Theodore W. Berger, Dong Song:
A flexible parylene probe for in vivo recordings from multiple subregions of the rat hippocampus. EMBC 2016: 2806-2809 - [c81]Eric Y. Hu, Jean-Marie C. Bouteiller, Dong Song, Theodore W. Berger:
Development of a detailed model of calcium dynamics at the postsynaptic spine of an excitatory synapse. EMBC 2016: 6102-6105 - [c80]Uldric A. Antao, John Choma Jr., Alireza A. Dibazar, Theodore W. Berger:
Mismatch and temperature compensation for subthreshold seismic sensor system. LASCAS 2016: 339-342 - 2015
- [j37]Eric Y. Hu, Jean-Marie C. Bouteiller, Dong Song, Michel Baudry, Theodore W. Berger:
Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations. Frontiers Comput. Neurosci. 9: 112 (2015) - [j36]Roman A. Sandler, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis:
Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus. J. Comput. Neurosci. 38(1): 89-103 (2015) - [j35]Viviane S. Ghaderi, Dong Song, John Choma Jr., Theodore W. Berger:
Nonlinear Cognitive Signal Processing in Ultralow-Power Programmable Analog Hardware. IEEE Trans. Circuits Syst. II Express Briefs 62-II(2): 124-128 (2015) - [j34]Yao Xin, Will X. Y. Li, Zhaorui Zhang, Ray C. C. Cheung, Dong Song, Theodore W. Berger:
An Application Specific Instruction Set Processor (ASIP) for Adaptive Filters in Neural Prosthetics. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 1034-1047 (2015) - [c79]Andrew Gilbert, Kyle Loizos, Anil Kumar RamRakhyani, Phillip J. Hendrickson, Gianluca Lazzi, Theodore W. Berger:
A 3-D admittance-level computational model of a rat hippocampus for improving prosthetic design. EMBC 2015: 2295-2298 - [c78]Brian S. Robinson, Dong Song, Theodore W. Berger:
Estimation of a large-scale generalized Volterra model for neural ensembles with group lasso and local coordinate descent. EMBC 2015: 2526-2529 - [c77]Eric Y. Hu, Jean-Marie C. Bouteiller, Dong Song, Theodore W. Berger:
The volterra functional series is a viable alternative to kinetic models for synaptic modeling -calibration and benchmarking. EMBC 2015: 3291-3294 - [c76]Dong Song, Brian S. Robinson, Robert E. Hampson, Vasilis Z. Marmarelis, Sam A. Deadwyler, Theodore W. Berger:
Sparse generalized volterra model of human hippocampal spike train transformation for memory prostheses. EMBC 2015: 3961-3964 - [c75]Gene J. Yu, Phillip J. Hendrickson, Dong Song, Theodore W. Berger:
Topography-dependent spatio-temporal correlations in the entorhinal-dentate-CA3 circuit in a large-scale computational model of the Rat Hippocampus. EMBC 2015: 3965-3968 - [c74]Phillip J. Hendrickson, Gene J. Yu, Dong Song, Theodore W. Berger:
A million-plus neuron model of the hippocampal dentate gyrus: Dependency of spatio-temporal network dynamics on topography. EMBC 2015: 4713-4716 - [c73]Huijing Xu, Ahuva Weltman, Min-Chi Hsiao, Kee Scholten, Ellis Meng, Theodore W. Berger, Dong Song:
Design of a flexible parylene-based multi-electrode array for multi-region recording from the rat hippocampus. EMBC 2015: 7139-7142 - [c72]Jean-Marie C. Bouteiller, Zhuobo Feng, Alexander Onopa, Mike Huang, Eric Y. Hu, Endre T. Somogyi, Michel Baudry, Serge Bischoff, Theodore W. Berger:
Maximizing predictability of a bottom-up complex multi-scale model through systematic validation and multi-objective multi-level optimization. NER 2015: 300-303 - [c71]Dong Song, Robert E. Hampson, Brian S. Robinson, Ioan Opris, Vasilis Z. Marmarelis, Sam A. Deadwyler, Theodore W. Berger:
Nonlinear dynamical modeling of human hippocampal CA3-CA1 functional connectivity for memory prostheses. NER 2015: 316-319 - 2014
- [j33]Vasilis Z. Marmarelis, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
On parsing the neural code in the prefrontal cortex of primates using principal dynamic modes. J. Comput. Neurosci. 36(3): 321-337 (2014) - [j32]Yao Xin, Will X. Y. Li, Ray C. C. Cheung, Rosa H. M. Chan, Hong Yan, Dong Song, Theodore W. Berger:
An FPGA based scalable architecture of a stochastic state point process filter (SSPPF) to track the nonlinear dynamics underlying neural spiking. Microelectron. J. 45(6): 690-701 (2014) - [j31]Ali Yousefi, Alireza A. Dibazar, Theodore W. Berger:
Synaptic dynamics: Linear model and adaptation algorithm. Neural Networks 56: 49-68 (2014) - [c70]Dong Song, Brian S. Robinson, John J. Granacki, Theodore W. Berger:
Implementing spiking neuron model and spike-timing-dependent plasticity with generalized Laguerre-Volterra models. EMBC 2014: 714-717 - [c69]Eric Y. Hu, Jean-Marie C. Bouteiller, Mike Huang, Dong Song, Theodore W. Berger:
A comparison between direct and indirect measurements of neurotransmitter vesicle release dynamics: A computational study. EMBC 2014: 1155-1158 - [c68]Will X. Y. Li, Yao Xin, Rosa H. M. Chan, Dong Song, Theodore W. Berger, Ray C. C. Cheung:
Laguerre-volterra model and architecture for MIMO system identification and output prediction. EMBC 2014: 4539-4542 - [c67]Huijing Xu, Min-Chi Hsiao, Dong Song, Theodore W. Berger:
Recording place cells from multiple sub-regions of the rat hippocampus with a customized micro-electrode array. EMBC 2014: 4876-4879 - [c66]Min-Chi Hsiao, Pen-Ning Yu, Dong Song, Charles Yu Liu, Christi N. Heck, David E. Millett, Theodore W. Berger:
A testbed to explore the optimal electrical stimulation parameters for suppressing inter-ictal spikes in human hippocampal slices. EMBC 2014: 5792-5795 - [c65]Pen-Ning Yu, Min-Chi Hsiao, Dong Song, Charles Yu Liu, Christi N. Heck, David E. Millett, Theodore W. Berger:
Unstable periodic orbits in human epileptic hippocampal slices. EMBC 2014: 5800-5803 - [c64]Gene J. Yu, Dong Song, Theodore W. Berger:
Implementation of the excitatory entorhinal-dentate-CA3 topography in a large-scale computational model of the rat hippocampus. EMBC 2014: 6581-6584 - [c63]Brian S. Robinson, Dong Song, Theodore W. Berger:
Generalized volterra kernel model identification of spike-timing-dependent plasticity from simulated spiking activity. EMBC 2014: 6585-6588 - [c62]Alireza A. Dibazar, A. H. Yousefi, Theodore W. Berger:
Large scale parameter estimation for nonlinear dynamic systems: Application on spike-in, spike-out neural models. IJCNN 2014: 2422-2427 - [c61]Will X. Y. Li, Yao Xin, Dong Song, Theodore W. Berger, Ray C. C. Cheung:
VLSI architecture of a high-performance neural spiking activity simulator based on generalized Volterra kernel. ISIC 2014: 272-275 - [r2]Theodore W. Berger:
Tripartite Synapse (Neuron-Astrocyte Interactions), Conductance Models. Encyclopedia of Computational Neuroscience 2014 - [r1]Dong Song, Theodore W. Berger:
Hippocampal Memory Prosthesis. Encyclopedia of Computational Neuroscience 2014 - 2013
- [j30]Vasilis Z. Marmarelis, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Nonlinear modeling of dynamic interactions within neuronal ensembles using Principal Dynamic Modes. J. Comput. Neurosci. 34(1): 73-87 (2013) - [j29]Dong Song, Haonan Wang, Catherine Y. Tu, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions. J. Comput. Neurosci. 35(3): 335-357 (2013) - [j28]Will X. Y. Li, Ray C. C. Cheung, Rosa H. M. Chan, Dong Song, Theodore W. Berger:
Real-Time Prediction of Neuronal Population Spiking Activity Using FPGA. IEEE Trans. Biomed. Circuits Syst. 7(4): 489-498 (2013) - [c60]Viviane S. Ghaderi, Dong Song, Jean-Marie C. Bouteiller, John Choma Jr., Theodore W. Berger:
A programmable analog subthreshold biomimetic model for bi-directional communication with the brain. EMBC 2013: 787-790 - [c59]Jean-Marie C. Bouteiller, Sushmita L. Allam, Nicolas Ambert, Renaud Greget, Eric Y. Hu, Serge Bischoff, Michel Baudry, Theodore W. Berger:
Influence of ionotropic receptors localization on glutamatergic synaptic response to paired-pulse stimulation protocol. EMBC 2013: 1037-1040 - [c58]Jean-Marie C. Bouteiller, Eric Y. Hu, Sushmita L. Allam, Viviane S. Ghaderi, Dong Song, Theodore W. Berger:
Insights on synaptic paired-pulse response using parametric and non-parametric models. EMBC 2013: 1041-1044 - [c57]Brian S. Robinson, Dong Song, Theodore W. Berger:
Laguerre-volterra identification of spike-timing-dependent plasticity from spiking activity: A simulation study. EMBC 2013: 5578-5581 - [c56]Gene J. Yu, Phillip J. Hendrickson, Brian S. Robinson, Dong Song, Theodore W. Berger:
The role of topography in the transformation of spatiotemporal patterns by a large-scale, biologically realistic model of the rat dentate gyrus. EMBC 2013: 5950-5953 - [c55]Robert E. Hampson, Joshua L. Fuqua, Peter F. Huettl, Ioan Opris, Dong Song, Dae C. Shin, Vasilis Z. Marmarelis, Theodore W. Berger, Greg A. Gerhardt, Sam A. Deadwyler:
Conformal ceramic electrodes that record glutamate release and corresponding neural activity in primate prefrontal cortex. EMBC 2013: 5954-5957 - [c54]Phillip J. Hendrickson, Gene J. Yu, Brian S. Robinson, Dong Song, Theodore W. Berger:
The contribution of relative activation levels between populations of cells to network activity in a large-scale biologically realistic model of the hippocampus. EMBC 2013: 5962-5965 - [c53]Will X. Y. Li, Ray C. C. Cheung, Rosa H. M. Chan, Dong Song, Theodore W. Berger:
A reconfigurable architecture for real-time prediction of neural activity. ISCAS 2013: 1869-1872 - 2012
- [j27]Sushmita L. Allam, Viviane S. Ghaderi, Jean-Marie Bouteiller, Arnaud Legendre, Nicolas Ambert, Renaud Greget, Serge Bischoff, Michel Baudry, Theodore W. Berger:
A Computational Model to Investigate Astrocytic Glutamate Uptake Influence on Synaptic Transmission and Neuronal Spiking. Frontiers Comput. Neurosci. 6: 70 (2012) - [j26]Ioan Opris, Robert E. Hampson, Greg A. Gerhardt, Theodore W. Berger, Sam A. Deadwyler:
Columnar Processing in Primate pFC: Evidence for Executive Control Microcircuits. J. Cogn. Neurosci. 24(12): 2334-2347 (2012) - [j25]Ude Lu, Shane M. Roach, Dong Song, Theodore W. Berger:
Nonlinear Dynamic Modeling of Neuron Action Potential Threshold During Synaptically Driven Broadband Intracellular Activity. IEEE Trans. Biomed. Eng. 59(3): 706-716 (2012) - [c52]Viviane S. Ghaderi, Shane M. Roach, Dong Song, Vasilis Z. Marmarelis, John Choma Jr., Theodore W. Berger:
Analog low-power hardware implementation of a Laguerre-Volterra model of intracellular subthreshold neuronal activity. EMBC 2012: 767-770 - [c51]Gene J. Yu, Brian S. Robinson, Phillip J. Hendrickson, Dong Song, Theodore W. Berger:
Implementation of topographically constrained connectivity for a large-scale biologically realistic model of the hippocampus. EMBC 2012: 1358-1361 - [c50]Ali Yousefi, Alireza A. Dibazar, Theodore W. Berger:
Synaptic dynamics: Linear model and adaptation algorithm. EMBC 2012: 1362-1365 - [c49]Brian S. Robinson, Gene J. Yu, Phillip J. Hendrickson, Dong Song, Theodore W. Berger:
Implementation of activity-dependent synaptic plasticity rules for a large-scale biologically realistic model of the hippocampus. EMBC 2012: 1366-1369 - [c48]Sushmita L. Allam, Jean-Marie C. Bouteiller, Eric Y. Hu, Renaud Greget, Nicolas Ambert, Serge Bischoff, Michel Baudry, Theodore W. Berger:
Influence of ionotropic receptor location on their dynamics at glutamatergic synapses. EMBC 2012: 1374-1377 - [c47]Dong Song, Ioan Opris, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Functional connectivity between Layer 2/3 and Layer 5 neurons in prefrontal cortex of nonhuman primates during a delayed match-to-sample task. EMBC 2012: 2555-2558 - [c46]Will X. Y. Li, Rosa H. M. Chan, Dong Song, Theodore W. Berger, Ray C. C. Cheung:
A dual mode FPGA design for the hippocampal prosthesis. EMBC 2012: 4579-4582 - [c45]Phillip J. Hendrickson, Gene J. Yu, Brian S. Robinson, Dong Song, Theodore W. Berger:
Towards a large-scale biologically realistic model of the hippocampus. EMBC 2012: 4595-4598 - [c44]Min-Chi Hsiao, Pen-Ning Yu, Dong Song, Charles Yu Liu, Christi N. Heck, David E. Millett, Theodore W. Berger:
Spatio-temporal inter-ictal activity recorded from human epileptic hippocampal slices. EMBC 2012: 5166-5169 - [c43]Hyung-Ook Park, Alireza A. Dibazar, Theodore W. Berger:
Nonlinear model for Dynamic Synapse Neural Network. EMBC 2012: 5441-5444 - [c42]Shane M. Roach, Ude Lu, Dong Song, Theodore W. Berger:
An analysis of the expression locus of long-term potentiation in hippocampal CA1 neurons. EMBC 2012: 5510-5513 - [c41]Jean-Marie C. Bouteiller, Arnaud Legendre, Sushmita L. Allam, Nicolas Ambert, Eric Y. Hu, Renaud Greget, Anne Florence Keller, Fabien Pernot, Serge Bischoff, Michel Baudry, Theodore W. Berger:
Modeling of the nervous system: From modulation of glutamatergic and gabaergic molecular dynamics to neuron spiking activity. EMBC 2012: 6612-6615 - 2011
- [j24]Will X. Y. Li, Rosa H. M. Chan, Wei Zhang, Ray C. C. Cheung, Dong Song, Theodore W. Berger:
High-Performance and Scalable System Architecture for the Real-Time Estimation of Generalized Laguerre-Volterra MIMO Model From Neural Population Spiking Activity. IEEE J. Emerg. Sel. Topics Circuits Syst. 1(4): 489-501 (2011) - [j23]Ude Lu, Dong Song, Theodore W. Berger:
Nonlinear Dynamic Modeling of Synaptically Driven Single Hippocampal Neuron Intracellular Activity. IEEE Trans. Biomed. Eng. 58(5): 1303-1313 (2011) - [j22]Jean-Marie Bouteiller, Sushmita L. Allam, Eric Y. Hu, Renaud Greget, Nicolas Ambert, Anne Florence Keller, Serge Bischoff, Michel Baudry, Theodore W. Berger:
Integrated Multiscale Modeling of the Nervous System: Predicting Changes in Hippocampal Network Activity by a Positive AMPA Receptor Modulator. IEEE Trans. Biomed. Eng. 58(10): 3008-3011 (2011) - [c40]Jean-Marie C. Bouteiller, Sushmita L. Allam, Eric Y. Hu, Renaud Greget, Nicolas Ambert, Anne Florence Keller, Fabien Pernot, Serge Bischoff, Michel Baudry, Theodore W. Berger:
Modeling of the nervous system: From molecular dynamics and synaptic modulation to neuron spiking activity. EMBC 2011: 445-448 - [c39]Ude Lu, Shane M. Roach, Dong Song, Theodore W. Berger:
A two-stage cascade nonlinear dynamical model of single neurons for the separation and quantification of pre- and post-synaptic mechanisms of synaptic transmission. EMBC 2011: 1427-1430 - [c38]Rosa H. M. Chan, Dong Song, Anushka V. Goonawardena, Sarah Bough, John Sesay, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Tracking the changes of hippocampal population nonlinear dynamics in rats learning a memory-dependent task. EMBC 2011: 3326-3329 - [c37]Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Estimation and statistical validation of event-invariant nonlinear dynamic models of hippocampal CA3-CA1 population activities. EMBC 2011: 3330-3333 - [c36]Vasilis Z. Marmarelis, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Dynamic nonlinear modeling of interactions between neuronal ensembles using principal dynamic modes. EMBC 2011: 3334-3337 - [c35]Robert E. Hampson, Vasilis Z. Marmarelis, Dae C. Shin, Greg A. Gerhardt, Dong Song, Rosa H. M. Chan, A. J. Sweatt, John J. Granacki, Theodore W. Berger, Sam A. Deadwyler:
Restorative encoding memory integrative neural device: "REMIND". EMBC 2011: 3338-3341 - [c34]Viviane S. Ghaderi, Sushmita L. Allam, Nicolas Ambert, Jean-Marie C. Bouteiller, John Choma Jr., Theodore W. Berger:
Modeling neuron-glia interactions: From parametric model to neuromorphic hardware. EMBC 2011: 3581-3584 - [c33]Will X. Y. Li, Rosa H. M. Chan, Wei Zhang, Ray C. C. Cheung, Dong Song, Theodore W. Berger:
A hardware-based computational platform for Generalized Laguerre-Volterra MIMO model for neural activities. EMBC 2011: 7282-7285 - [c32]Will X. Y. Li, Ray C. C. Cheung, Wei Zhang, Rosa H. M. Chan, Dong Song, Theodore W. Berger:
FPGA Architecture of Generalized Laguerre-Volterra MIMO Model for Neural Population Spiking Activities. FCCM 2011: 254 - [c31]Will X. Y. Li, Rosa H. M. Chan, Wei Zhang, C. W. Yu, Ray C. C. Cheung, Dong Song, Theodore W. Berger:
FPGA Architecture of Generalized Laguerre-Volterra MIMO Model for Neural Population Activities. FPL 2011: 44-49 - [c30]Ali Yousefi, Alireza A. Dibazar, Theodore W. Berger:
Supervised learning in a single layer Dynamic Synapses Neural Network. IJCNN 2011: 2250-2257 - [c29]Hyung-Ook Park, Alireza A. Dibazar, Theodore W. Berger:
Discrete Synapse Recurrent Neural Network with time-varying delays for nonlinear system modeling and its application on seismic signal classification. IJCNN 2011: 2374-2381 - 2010
- [j21]Theodore W. Berger, Zhe (Sage) Chen, Andrzej Cichocki, Karim G. Oweiss, Rodrigo Quian Quiroga, Nitish V. Thakor:
Signal Processing for Neural Spike Trains. Comput. Intell. Neurosci. 2010: 698751:1-698751:2 (2010) - [j20]Bing Lu, Alireza A. Dibazar, Theodore W. Berger:
Noise-robust acoustic signature recognition using nonlinear Hebbian learning. Neural Networks 23(10): 1252-1263 (2010) - [j19]Theodore W. Berger, Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis:
The Neurobiological Basis of Cognition: Identification by Multi-Input, Multioutput Nonlinear Dynamic Modeling. Proc. IEEE 98(3): 356-374 (2010) - [c28]Hyung-Ook Park, Alireza A. Dibazar, Theodore W. Berger:
Design of a helmet-mounted microphone array for sound localization. ICASSP 2010: 1478-1481 - [c27]Ali Yousefi, Alireza A. Dibazar, Theodore W. Berger:
The Application of Non-Homogenous HMM on the Detection of Security Fence Breaches. ICASSP 2010: 1606-1609 - [c26]Alireza A. Dibazar, Sageev T. George, Theodore W. Berger:
Statistical spiking model for real world pattern recognition applications. IJCNN 2010: 1-4 - [c25]Hyung-Ook Park, Alireza A. Dibazar, Theodore W. Berger:
Discrete Synapse Recurrent Neural Network for nonlinear system modeling and its application on seismic signal classification. IJCNN 2010: 1-7
2000 – 2009
- 2009
- [j18]Dong Song, Vasilis Z. Marmarelis, Theodore W. Berger:
Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: computational study. J. Comput. Neurosci. 26(1): 1-19 (2009) - [j17]Dong Song, Zhuo Wang, Vasilis Z. Marmarelis, Theodore W. Berger:
Parametric and non-parametric modeling of short-term synaptic plasticity. Part II: Experimental study. J. Comput. Neurosci. 26(1): 21-37 (2009) - [j16]Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Nonlinear modeling of neural population dynamics for hippocampal prostheses. Neural Networks 22(9): 1340-1351 (2009) - [c24]Theodore W. Berger, Dong Song, Vasilis Z. Marmarelis:
Multi-Input, Multi-Output Nonlinear Dynamic Modeling to Identify Biologically-Based Transformations as the "Cognitive Processes" Represented by the Ensemble Coding of Neuron Populations. AAAI Fall Symposium: Biologically Inspired Cognitive Architectures 2009 - [c23]Hyung-Ook Park, Alireza A. Dibazar, Theodore W. Berger:
Cadence analysis of temporal gait patterns for seismic discrimination between human and quadruped footsteps. ICASSP 2009: 1749-1752 - 2008
- [j15]Angelika Dimoka, Spiros H. Courellis, Ghassan I. Gholmieh, Vasilis Z. Marmarelis, Theodore W. Berger:
Modeling the Nonlinear Properties of the in vitro Hippocampal Perforant Path-Dentate System Using Multielectrode Array Technology. IEEE Trans. Biomed. Eng. 55(2): 693-702 (2008) - [c22]Bing Lu, Alireza A. Dibazar, Theodore W. Berger:
Nonlinear Hebbian Learning for noise-independent vehicle sound recognition. IJCNN 2008: 1336-1343 - [c21]Theodore W. Berger:
Implantable biomimetic electronics as neural prostheses for lost memory function. IUI 2008: 441 - 2007
- [j14]Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Nonlinear Dynamic Modeling of Spike Train Transformations for Hippocampal-Cortical Prostheses. IEEE Trans. Biomed. Eng. 54(6): 1053-1066 (2007) - [j13]Walid V. Soussou, Geoffrey J. Yoon, Roberta Diaz Brinton, Theodore W. Berger:
Neuronal Network Morphology and Electrophysiologyof Hippocampal Neurons Cultured on Surface-Treated Multielectrode Arrays. IEEE Trans. Biomed. Eng. 54(7): 1309-1320 (2007) - [c20]Bing Lu, Walter M. Yamada, Theodore W. Berger:
Asymmetric Synaptic Plasticity Based on Arbitrary Pre- and Postsynaptic Timing Spikes Using Finite State Model. IJCNN 2007: 841-846 - [c19]Alireza A. Dibazar, Hyung-Ook Park, Theodore W. Berger:
The Application of Dynamic Synapse Neural Networks on Footstep and Vehicle Recognition. IJCNN 2007: 1842-1846 - 2006
- [c18]Alireza A. Dibazar, Theodore W. Berger, Shrikanth S. Narayanan:
Pathological Voice Assessment. EMBC 2006: 1669-1673 - [c17]Vasilis Z. Marmarelis, Theodoros P. Zanos, Spiros H. Courellis, Theodore W. Berger:
Boolean Modeling of Neural Systems with Point-Process Inputs and Outputs. EMBC 2006: 2114-2117 - [c16]Spiros H. Courellis, Theodoros P. Zanos, Min-Chi Hsiao, Robert E. Hampson, Sam A. Deadwyler, Vasilis Z. Marmarelis, Theodore W. Berger:
Modeling Hippocampal Nonlinear Dynamic Transformations with Principal Dynamic Modes. EMBC 2006: 2300-2303 - [c15]Bing Lu, Walter M. Yamada, Theodore W. Berger:
Nonlinear Dynamic Neural Network for Text-Independent Speaker Identification using Information Theoretic Learning Technology. EMBC 2006: 2442-2445 - [c14]Jean-Marie C. Bouteiller, Yumei Qiu, Mohammed B. Ziane, Michel Baudry, Theodore W. Berger:
EONS: An Online Synaptic Modeling Platform. EMBC 2006: 4155-4158 - [c13]Min-Chi Hsiao, Chiu-Hsien Chan, Vijay Srinivasan, Ashish Ahuja, Gopal Erinjippurath, Theodoros P. Zanos, Ghassan I. Gholmieh, Dong Song, Jack Wills, Jeff LaCoss, Spiros H. Courellis, Armand R. Tanguay, John J. Granacki, Vasilis Z. Marmarelis, Theodore W. Berger:
VLSI Implementation of a Nonlinear Neuronal Model: A "Neural Prosthesis" to Restore Hippocampal Trisynaptic Dynamics. EMBC 2006: 4396-4399 - [c12]Theodoros P. Zanos, Spiros H. Courellis, Robert E. Hampson, Sam A. Deadwyler, Vasilis Z. Marmarelis, Theodore W. Berger:
A multi-input modeling approach to quantify hippocampal nonlinear dynamic transformations. EMBC 2006: 4967-4970 - [c11]Angelika Dimoka, Spiros H. Courellis, Vasilis Z. Marmarelis, Theodore W. Berger:
Modeling the Nonlinear Dynamic Interactions of the Lateral and the Medial Perforant Path of the Hippocampal Dentate Gyrus. EMBC 2006: 5539-5542 - [c10]Xiaping Xie, Dong Song, Zhuo Wang, Vasilis Z. Marmarelis, Theodore W. Berger:
Interaction of Short-Term Neuronal Plasticity and Synaptic Plasticity Revealed by Nonlinear Systems Analysis in Dentate Granule Cells. EMBC 2006: 5543-5546 - [c9]Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Physiologically Plausible Stochastic Nonlinear Kernel Models of Spike Train to Spike Train Transformation. EMBC 2006: 6129-6132 - [c8]Bing Lu, Walter M. Yamada, Theodore W. Berger:
Nonlinear Queuing Model for Dynamic Synapse with Multiple Transmitter Pools. IJCNN 2006: 181-187 - [c7]Alireza A. Dibazar, Abhijith Bangalore, Hyung-Ook Park, Sageev T. George, Walter M. Yamada, Theodore W. Berger:
Hardware Implementation of Dynamic Synapse Neural Networks for Acoustic Sound Recognition. IJCNN 2006: 2015-2022 - 2005
- [j12]Ghassan I. Gholmieh, Spiros H. Courellis, Vasilis Z. Marmarelis, Theodore W. Berger:
Detecting CA1 short-term plasticity variations associated with changes in stimulus intensity and extracellular medium composition. Neurocomputing 63: 465-481 (2005) - 2003
- [j11]Hassan H. Namarvar, Theodore W. Berger:
An efficient training algorithm for dynamic synapse neural networks using trust region methods. Neural Networks 16(5-6): 585-591 (2003) - 2001
- [j10]Theodore W. Berger, Michel Baudry, Roberta Diaz Brinton, Jim-Shih Liaw, Vasilis Z. Marmarelis, Alex Yoondong Park, Bing J. Sheu, Armand R. Tanguay:
Brain-implantable biomimetic electronics as the next era in neural prosthetics. Proc. IEEE 89(7): 993-1012 (2001) - 2000
- [j9]Theodore W. Berger:
Building Replacement Parts for the Brain: A New Era in Neural Prothetcis, SIGMOD Conference 1999, Keynote Speech, Video. ACM SIGMOD Digit. Symp. Collect. 2(2) (2000) - [j8]Konstantinos Alataris, Theodore W. Berger, Vasilis Z. Marmarelis:
A novel network for nonlinear modeling of neural systems with arbitrary point-process inputs. Neural Networks 13(2): 255-266 (2000) - [c6]Alex Yoondong Park, Jim-Shih Liaw, Theodore W. Berger, Bing J. Sheu:
Compact VLSI Neural Network Circuit with High-Capacity Dynamic Synapses. IJCNN (4) 2000: 214-218
1990 – 1999
- 1999
- [j7]Taraneh Ghaffari-Farazi, Jim-Shih Liaw, Theodore W. Berger:
Consequence of morphological alterations on synaptic function. Neurocomputing 26-27: 17-27 (1999) - [j6]Jim-Shih Liaw, Theodore W. Berger:
Dynamic synapse: Harnessing the computing power of synaptic dynamics. Neurocomputing 26-27: 199-206 (1999) - [j5]Martin T. Chian, Vasilis Z. Marmarelis, Theodore W. Berger:
Decomposition of neural systems with nonlinear feedback using stimulus-response data. Neurocomputing 26-27: 641-654 (1999) - [j4]Ying Shu, Xiaping Xie, Jim-Shih Liaw, Theodore W. Berger:
A protocol-based simulation for linking computational and experimental studies. Neurocomputing 26-27: 1039-1047 (1999) - [j3]M. Iatrou, Theodore W. Berger, Vasilis Z. Marmarelis:
Modeling of nonlinear nonstationary dynamic systems with a novel class of artificial neural networks. IEEE Trans. Neural Networks 10(2): 327-339 (1999) - 1997
- [c5]Jim-Shih Liaw, Theodore W. Berger:
Computing with dynamic synapses: a case study of speech recognition. ICNN 1997: 350-355 - 1996
- [c4]David C. Chen, Bing J. Sheu, Theodore W. Berger:
A Compact Neural Network Based CDMA Receiver for Multimedia Wireless Communication. ICCD 1996: 99-103 - [c3]Richard H. Tsai, Bing J. Sheu, Theodore W. Berger:
VLSI design for real-time signal processing based on biologically realistic neural models. ICNN 1996: 676-681 - 1995
- [c2]Richard H. Tsai, Eric Y. Chou, Bing J. Sheu, Theodore W. Berger:
A hippocampal model implementation using VLSI table-look-up and model-based approaches. ICNN 1995: 1508-1512 - [c1]Bing J. Sheu, Theodore W. Berger, Tony H. Wu, Richard H. Tsai:
VLSI Neural Network Implementation of a Hippocampal Model. ISCAS 1995: 1664-1667 - 1994
- [j2]Theodore W. Berger, Gilbert A. Chauvet, Robert J. Sclabassi:
A biologically based model of functional properties of the hippocampus. Neural Networks 7(6-7): 1031-1064 (1994) - 1992
- [j1]Don N. Krieger, Theodore W. Berger, Robert J. Sclabassi:
Instantaneous characterization of time varying nonlinear systems (neurophysiological responses). IEEE Trans. Biomed. Eng. 39(4): 420-424 (1992)
Coauthor Index
Jean-Marie Bouteiller
aka: Jean-Marie C. Bouteiller
aka: Jean-Marie C. Bouteiller
Sam A. Deadwyler
aka: Samuel A. Deadwyler
aka: Samuel A. Deadwyler
Xiangyu Li 0005
aka: Will X. Y. Li
aka: Will X. Y. Li
[j55] [j54] [j52] [j50] [c101] [c100] [j47] [j46] [j45] [j44] [j43] [j42] [j41] [c97] [c96] [c94] [c92] [c91] [c90] [j40] [j39] [j38] [c88] [c87] [c86] [c85] [c84] [c83] [c82] [c81] [j37] [j36] [j35] [j34] [c78] [c77] [c76] [c75] [c74] [c73] [c71] [j33] [j32] [c70] [c69] [c68] [c67] [c66] [c65] [c64] [c63] [c61] [r1] [j30] [j29] [j28] [c60] [c58] [c57] [c56] [c55] [c54] [c53] [j25] [c52] [c51] [c49] [c47] [c46] [c45] [c44] [c42] [j24] [j23] [c39] [c38] [c37] [c36] [c35] [c33] [c32] [c31] [j19] [j18] [j17] [j16] [c24] [j14] [c13] [c10] [c9]
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