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ORCIDGordon M. Shepherd
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2020 – today
- 2020
[j45]Basavaraju G. Sanganahalli
, Keeley L. Baker, Garth J. Thompson, Peter Herman, Gordon M. Shepherd, Justus Valentijn Verhagen, Fahmeed Hyder:
Orthonasal versus retronasal glomerular activity in rat olfactory bulb by fMRI. NeuroImage 212: 116664 (2020)
2010 – 2019
- 2019
- [j44]Robert A. McDougal, Isha Dalal, Thomas M. Morse, Gordon M. Shepherd:
Automated Metadata Suggestion During Repository Submission. Neuroinformatics 17(3): 361-371 (2019) - 2018
- [j43]Garth John Thompson, Basavaraju G. Sanganahalli, Keeley L. Baker, Peter Herman, Gordon M. Shepherd, Justus Valentijn Verhagen, Fahmeed Hyder:
Spontaneous activity forms a foundation for odor-evoked activation maps in the rat olfactory bulb. NeuroImage 172: 586-596 (2018) - [j42]Gordon M. Shepherd:
Wilfrid Rall. Neuroinformatics 16(2): 151-152 (2018) - 2017
- [j41]Robert A. McDougal, Thomas M. Morse, Ted Carnevale, Luis N. Marenco, Rixin Wang, Michele Migliore, Perry L. Miller, Gordon M. Shepherd, Michael L. Hines:
Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. J. Comput. Neurosci. 42(1): 1-10 (2017) - 2016
- [j40]Luis N. Marenco, Rixin Wang, Robert A. McDougal, Tsviya Olender, Michal Twik, Elspeth A. Bruford, Xinyi Liu, Jian Zhang, Doron Lancet, Gordon M. Shepherd, Chiquito J. Crasto:
ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions. Database J. Biol. Databases Curation 2016 (2016) - [j39]Francesco Cavarretta, Addolorata Marasco, Michael L. Hines, Gordon M. Shepherd, Michele Migliore:
Glomerular and Mitral-Granule Cell Microcircuits Coordinate Temporal and Spatial Information Processing in the Olfactory Bulb. Frontiers Comput. Neurosci. 10: 67 (2016) - [j38]Basavaraju G. Sanganahalli, Michelle R. Rebello, Peter Herman, Xenophon Papademetris, Gordon M. Shepherd, Justus Valentijn Verhagen, Fahmeed Hyder:
Comparison of glomerular activity patterns by fMRI and wide-field calcium imaging: Implications for principles underlying odor mapping. NeuroImage 126: 208-218 (2016) - 2015
- [j37]Robert A. McDougal, Gordon M. Shepherd:
3D-printer visualization of neuron models. Frontiers Neuroinformatics 9: 18 (2015) - [j36]Robert A. McDougal, Thomas M. Morse, Michael L. Hines, Gordon M. Shepherd:
ModelView for ModelDB: Online Presentation of Model Structure. Neuroinformatics 13(4): 459-470 (2015) - 2014
- [j35]Michele Migliore, Francesco Cavarretta, Michael L. Hines, Gordon M. Shepherd:
Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb. Frontiers Comput. Neurosci. 8: 50 (2014) - [j34]Luis N. Marenco, Rixin Wang, Anita E. Bandrowski, Jeffrey S. Grethe, Gordon M. Shepherd, Perry L. Miller:
Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources. Frontiers Neuroinformatics 8: 58 (2014) - [r2]Robert A. McDougal, Rixin Wang, Thomas M. Morse, Michele Migliore, Luis N. Marenco, Ted Carnevale, Michael L. Hines, Gordon M. Shepherd:
ModelDB. Encyclopedia of Computational Neuroscience 2014 - [r1]Gordon M. Shepherd, Thomas M. Morse, Luis N. Marenco, Kei-Hoi Cheung, Ted Carnevale, Michele Migliore, Robert A. McDougal, Michael L. Hines, Perry L. Miller:
SenseLab: Integration of Multidisciplinary Neuroscience Data. Encyclopedia of Computational Neuroscience 2014 - 2013
- [j33]Yuguo Yu, Thomas S. McTavish, Michael L. Hines, Gordon M. Shepherd, Cesare Valenti, Michele Migliore:
Sparse Distributed Representation of Odors in a Large-scale Olfactory Bulb Circuit. PLoS Comput. Biol. 9(3) (2013) - 2012
- [j32]Thomas S. McTavish, Michele Migliore, Gordon M. Shepherd, Michael L. Hines:
Mitral cell spike synchrony modulated by dendrodendritic synapse location. Frontiers Comput. Neurosci. 6: 3 (2012) - [j31]David J. Hamilton, Gordon M. Shepherd, Maryann E. Martone, Giorgio A. Ascoli:
An ontological approach to describing neurons and their relationships. Frontiers Neuroinformatics 6: 15 (2012) - 2010
- [j30]Matthias Samwald, Huajun Chen, Alan Ruttenberg, Ernest Lim, Luis N. Marenco, Perry L. Miller, Gordon M. Shepherd, Kei-Hoi Cheung:
Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience. Artif. Intell. Medicine 48(1): 21-28 (2010) - [j29]Luis N. Marenco, Rixin Wang, Gordon M. Shepherd, Perry L. Miller:
The NIF DISCO Framework: Facilitating Automated Integration of Neuroscience Content on the Web. Neuroinformatics 8(2): 101-112 (2010)
2000 – 2009
- 2009
- [j28]Kei-Hoi Cheung, Ernest Lim, Matthias Samwald, Huajun Chen, Luis N. Marenco, Matthew Holford, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller:
Approaches to neuroscience data integration. Briefings Bioinform. 10(4): 345-353 (2009) - [c7]Matthias Samwald, Ernest Lim, Peter Masiar, Luis N. Marenco, Huajun Chen, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung:
Entrez Neuron RDFa: A Pragmatic Semantic Web Application for Data Integration in Neuroscience Research. MIE 2009: 317-321 - 2008
- [j27]Michele Migliore, Gordon M. Shepherd:
Dendritic action potentials connect distributed dendrodendritic microcircuits. J. Comput. Neurosci. 24(2): 207-221 (2008) - [j26]Daniel Gardner, Huda Akil, Giorgio A. Ascoli, Douglas M. Bowden, William J. Bug, Duncan E. Donohue, David H. Goldberg, Bernice Grafstein, Jeffrey S. Grethe, Amarnath Gupta, Maryam Halavi, David N. Kennedy, Luis N. Marenco, Maryann E. Martone, Perry L. Miller, Hans-Michael Müller, Adrian Robert, Gordon M. Shepherd, Paul W. Sternberg, David C. Van Essen, Robert W. Williams:
The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience. Neuroinformatics 6(3): 149-160 (2008) - [j25]William J. Bug, Giorgio A. Ascoli, Jeffrey S. Grethe, Amarnath Gupta, Christine Fennema-Notestine, Angela R. Laird, Stephen D. Larson, Daniel L. Rubin, Gordon M. Shepherd, Jessica A. Turner, Maryann E. Martone:
The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience. Neuroinformatics 6(3): 175-194 (2008) - [j24]Amarnath Gupta, William J. Bug, Luis N. Marenco, Xufei Qian, Christopher Condit, Arun Rangarajan, Hans-Michael Müller, Perry L. Miller, Brian Sanders, Jeffrey S. Grethe, Vadim Astakhov, Gordon M. Shepherd, Paul W. Sternberg, Maryann E. Martone:
Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF). Neuroinformatics 6(3): 205-217 (2008) - [j23]Luis N. Marenco, Giorgio A. Ascoli, Maryann E. Martone, Gordon M. Shepherd, Perry L. Miller:
The NIF LinkOut Broker: A Web Resource to Facilitate Federated Data Integration using NCBI Identifiers. Neuroinformatics 6(3): 219-227 (2008) - [j22]Luis N. Marenco, Yuli Li, Maryann E. Martone, Paul W. Sternberg, Gordon M. Shepherd, Perry L. Miller:
Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework. Neuroinformatics 6(3): 229-239 (2008) - 2007
- [j21]Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd:
SenseLab: new developments in disseminating neuroscience information. Briefings Bioinform. 8(3): 150-162 (2007) - [j20]Hugo Y. K. Lam, Luis N. Marenco, Tim Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, Gwendolyn T. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei-Hoi Cheung:
AlzPharm: integration of neurodegeneration data using RDF. BMC Bioinform. 8(S-3) (2007) - [j19]Nian Liu, Fuqiang Xu, Perry L. Miller, Gordon M. Shepherd:
OdorMapComparer: An Application for Quantitative Analyses and Comparisons of fMRI Brain Odor Maps. Neuroinformatics 5(2): 105-114 (2007) - 2006
- [c6]Hugo Y. K. Lam, Luis N. Marenco, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung:
Using Web Ontology Language to Integrate Heterogeneous Databases in the Neurosciences. AMIA 2006 - 2005
- [j18]Michele Migliore, Michael L. Hines, Gordon M. Shepherd:
The Role of Distal Dendritic Gap Junctions in Synchronization of Mitral Cell Axonal Output. J. Comput. Neurosci. 18(2): 151-161 (2005) - 2004
- [j17]Luis N. Marenco, Tzuu-Yi Wang, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni:
Model Formulation: QIS: A Framework for Biomedical Database Federation. J. Am. Medical Informatics Assoc. 11(6): 523-534 (2004) - [j16]Michael L. Hines, Thomas M. Morse, Michele Migliore, Nicholas T. Carnevale, Gordon M. Shepherd:
ModelDB: A Database to Support Computational Neuroscience. J. Comput. Neurosci. 17(1): 7-11 (2004) - [j15]Nian Liu, Fuqiang Xu, Luis N. Marenco, Fahmeed Hyder, Perry L. Miller, Gordon M. Shepherd:
Informatics approaches to functional MRI odor mapping of the rodent olfactory bulb - OdorMapBuilder and OdorMapDB. Neuroinformatics 2(1): 3-18 (2004) - [j14]Daniel Gardner, Gordon M. Shepherd:
A gateway to the future of neuroinformatics. Neuroinformatics 2(3): 271-274 (2004) - [j13]Andrew P. Davison, Thomas M. Morse, Michele Migliore, Gordon M. Shepherd, Michael L. Hines:
Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation. Neuroinformatics 2(3): 327-332 (2004) - 2003
- [j12]Luis N. Marenco, Nicholas P. Tosches, Chiquito J. Crasto, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni:
Application of Information Technology: Achieving Evolvable Web-Database Bioscience Applications Using the EAV/CR Framework: Recent Advances. J. Am. Medical Informatics Assoc. 10(5): 444-453 (2003) - [j11]Michele Migliore, Thomas M. Morse, Andrew P. Davison, Luis N. Marenco, Gordon M. Shepherd, Michael L. Hines:
ModelDB - Making models publicly accessible to support computational neuroscience. Neuroinformatics 1(1): 135-139 (2003) - [j10]Chiquito J. Crasto, Luis N. Marenco, Michele Migliore, Buqing Mao, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
Text mining neuroscience journal articles to populate neuroscience databases. Neuroinformatics 1(3): 215-237 (2003) - [j9]Daniel Gardner, Arthur W. Toga, Giorgio A. Ascoli, Jackson T. Beatty, James F. Brinkley, Anders M. Dale, Peter T. Fox, Esther P. Gardner, John S. George, Nigel H. Goddard, Kristen M. Harris, Edward Herskovits, Michael L. Hines, Gwen A. Jacobs, Russell E. Jacobs, Edward G. Jones, David N. Kennedy, Daniel Y. Kimberg, John C. Mazziotta, Perry L. Miller, Susumu Mori, David C. Mountain, Allan L. Reiss, Glenn D. Rosen, David A. Rottenberg, Gordon M. Shepherd, Neil R. Smalheiser, Kenneth P. Smith, Tom Strachan, David C. Van Essen, Robert W. Williams, Stephen T. C. Wong:
Towards effective and rewarding data sharing. Neuroinformatics 1(3): 289-295 (2003) - [j8]Gordon M. Shepherd:
Sharing the mighty mouse. Neuroinformatics 1(4): 411-413 (2003) - [c5]Chiquito J. Crasto, Thomas M. Morse, Michele Migliore, Prakash M. Nadkarni, Michael L. Hines, Douglas E. Brash, Perry L. Miller, Gordon M. Shepherd:
Creating Knowledgebases to Text-Mine PUBMED Articles Using Clustering Techniques. AMIA 2003 - 2002
- [j7]Chiquito J. Crasto, Luis N. Marenco, Perry L. Miller, Gordon M. Shepherd:
Olfactory Receptor Database: a metadata-driven automated population from sources of gene and protein sequences. Nucleic Acids Res. 30(1): 354-360 (2002) - 2001
- [j6]Perry L. Miller, Prakash M. Nadkarni, Michael S. Singer, Luis N. Marenco, Michael L. Hines, Gordon M. Shepherd:
Synthesis of Research: Integration of Multidisciplinary Sensory Data: A Pilot Model of the Human Brain Project Approach. J. Am. Medical Informatics Assoc. 8(1): 34-48 (2001) - [c4]Chiquito J. Crasto, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
A Pilot Approach to Automated and Efficient Transfer of Neuroscience Data from Journal Articles to Searchable Databases. AMIA 2001 - 2000
- [j5]Emmanouil Skoufos, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
Olfactory Receptor Database: a sensory chemoreceptor resource. Nucleic Acids Res. 28(1): 341-343 (2000) - [c3]Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
The SenseLab Database: System Design Towards Interoperability. AMIA 2000
1990 – 1999
- 1999
- [j4]Prakash M. Nadkarni, Luis N. Marenco, Roland Chen, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller:
Application of Information Technology: Organization of Heterogeneous Scientific Data Using the EAV/CR Representation. J. Am. Medical Informatics Assoc. 6(6): 478-493 (1999) - [j3]Emmanouil Skoufos, Matthew D. Healy, Michael S. Singer, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
Olfactory Receptor Database: a database of the largest eukaryotic gene family. Nucleic Acids Res. 27(1): 343-345 (1999) - [c2]Luis N. Marenco, Prakash M. Nadkarni, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller:
Neuronal database integration: the Senselab EAV data model. AMIA 1999 - 1998
- [c1]Emmanouil Skoufos, Jason S. Mirsky, Matthew D. Healy, Michael S. Singer, Michael L. Hines, Prakash M. Nakardi, Perry L. Miller, Gordon M. Shepherd:
Acquiring, Storing and Retrieving Diverse Biomedical Data Using the World-Wide-Web: The SenseLab Paradigm. AMIA 1998 - 1996
- [j2]Bret E. Peterson, Matthew D. Healy, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
Application of Technology: ModelDB: An Environment for Running and Storing Computational Models and Their Results Applied to Neuroscience. J. Am. Medical Informatics Assoc. 3(6): 389-398 (1996) - 1994
- [j1]Gordon M. Shepherd:
Dedication of the first issue to Wilfrid Rall. J. Comput. Neurosci. 1(1-2): 7-8 (1994)
Coauthor Index
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