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ORCIDIbrahim Burak Özyurt
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2020 – today
- 2021
[j16]Chun-Nan Hsu
, Chia-Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen A. William, Ko-Wei Lin, Anita E. Bandrowski, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone:
Antibody Watch: Text mining antibody specificity from the literature. PLoS Comput. Biol. 17(5) (2021)- [c11]Ibrahim Burak Özyurt:
End-to-end Biomedical Question Answering via Bio-AnswerFinder and Discriminative Language Representation Models. CLEF (Working Notes) 2021: 286-301 - 2020
- [j15]Ibrahim Burak Özyurt, Anita E. Bandrowski, Jeffrey S. Grethe:
Bio-AnswerFinder: a system to find answers to questions from biomedical texts. Database J. Biol. Databases Curation 2020: baz137 (2020) - [j14]Chun-Nan Hsu, Anita E. Bandrowski, Tom Gillespie, Jon Udell, Ko-Wei Lin, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone:
Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts. Comput. Sci. Eng. 22(2): 22-32 (2020) - [c10]Ibrahim Burak Özyurt:
On the effectiveness of small, discriminatively pre-trained language representation models for biomedical text mining. SDP@EMNLP 2020: 104-112 - [i1]Chun-Nan Hsu, Chia-Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen A. William, Ko-Wei Lin, Anita E. Bandrowski, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone:
Antibody Watch: Text Mining Antibody Specificity from the Literature. CoRR abs/2008.01937 (2020)
2010 – 2019
- 2019
- [c9]Ibrahim Burak Özyurt, Jeffrey S. Grethe:
Iterative Document Retrieval via Deep Learning Approaches for Biomedical Question Answering. eScience 2019: 533-538 - 2018
- [j13]Ibrahim Burak Özyurt, Jeffrey S. Grethe:
Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement. Database J. Biol. Databases Curation 2018: bay130 (2018) - [j12]Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu:
DataMed - an open source discovery index for finding biomedical datasets. J. Am. Medical Informatics Assoc. 25(3): 300-308 (2018) - 2016
- [j11]David B. Keator, Theo G. M. van Erp, Jessica A. Turner, Gary H. Glover, Bryon A. Mueller, Thomas T. Liu, James T. Voyvodic, Jerod Rasmussen, Vince D. Calhoun, Hyo Jong Lee, Arthur W. Toga, Sarah C. McEwen, Judith M. Ford, Daniel H. Mathalon, Michele T. Diaz, Daniel S. O'Leary, Henry Jeremy Bockholt, Syam Gadde, Adrian Preda, Cynthia G. Wible, Hal S. Stern, Aysenil Belger, Gregory McCarthy, I. Burak Özyurt, Steven G. Potkin, The FBIRN Consortium:
The Function Biomedical Informatics Research Network Data Repository. NeuroImage 124: 1074-1079 (2016) - [j10]David Shin, Ibrahim Burak Özyurt, Greg G. Brown, Christine Fennema-Notestine, Thomas T. Liu:
The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) data repository. NeuroImage 124: 1202-1207 (2016) - [c8]Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado:
A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System. AMIA 2016 - [c7]Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado:
Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery. AMIA 2016 - 2013
- [j9]David Shin, I. Burak Özyurt, Thomas T. Liu:
The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) database and analysis pipeline for arterial spin labeling MRI data. Frontiers Neuroinformatics 7: 21 (2013) - 2012
- [j8]Ibrahim Burak Özyurt:
Automatic Identification and Classification of Noun Argument Structures in Biomedical Literature. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1639-1648 (2012) - [c6]Ibrahim Burak Özyurt, Christopher Condit, Amarnath Gupta:
Processing Semantic Keyword Queries for Scientific Literature. NLDB 2012: 378-384 - 2011
- [j7]Greg G. Brown, Daniel H. Mathalon, Hal S. Stern, Judith M. Ford, Bryon A. Mueller, Douglas N. Greve, Gregory McCarthy, James Voyvodic, Gary Glover, Michele T. Diaz, Elizabeth Yetter, I. Burak Özyurt, Kasper W. Jorgensen, Cynthia G. Wible, Jessica A. Turner, Wesley K. Thompson, Steven G. Potkin:
Multisite reliability of cognitive BOLD data. NeuroImage 54(3): 2163-2175 (2011) - 2010
- [j6]I. Burak Özyurt, David B. Keator, Dingying Wei, Christine Fennema-Notestine, Karen R. Pease, Henry Jeremy Bockholt, Jeffrey S. Grethe:
Federated Web-accessible Clinical Data Management within an Extensible NeuroImaging Database. Neuroinformatics 8(4): 231-249 (2010) - [c5]I. Burak Özyurt:
Semi-supervised Methods for Biomedical Hedge Classification. ICSC 2010: 386-393
2000 – 2009
- 2009
- [j5]David B. Keator, Dingying Wei, Syam Gadde, Henry Jeremy Bockholt, Jeffrey S. Grethe, Daniel S. Marcus, Nicole Aucoin, Ibrahim Burak Özyurt:
Derived data storage and exchange workflow for large-scale neuroimaging analyses on the BIRN grid. Frontiers Neuroinformatics 3: 30 (2009) - [c4]I. Burak Özyurt:
A Large Margin Approach to Anaphora Resolution for Neuroscience Knowledge Discovery. FLAIRS 2009 - 2008
- [j4]David B. Keator, Jeffrey S. Grethe, Daniel S. Marcus, I. Burak Özyurt, Syam Gadde, Shawn N. Murphy, Steve Pieper, Douglas N. Greve, R. Notestine, Henry Jeremy Bockholt, Philip M. Papadopoulos:
A National Human Neuroimaging Collaboratory Enabled by the Biomedical Informatics Research Network (BIRN). IEEE Trans. Inf. Technol. Biomed. 12(2): 162-172 (2008) - [c3]I. Burak Özyurt:
A Semantic Parser for Neuro-Degenerative Disease Knowledge Discovery. FLAIRS 2008: 189-194 - 2007
- [c2]I. Burak Özyurt, Greg G. Brown:
Search Result Refinement via Machine Learning from Labeled-Unlabeled Data for Meta-search. CIDM 2007: 186-193
1990 – 1999
- 1999
- [j3]Lawrence O. Hall, Ibrahim Burak Özyurt, James C. Bezdek:
Clustering with a genetically optimized approach. IEEE Trans. Evol. Comput. 3(2): 103-112 (1999) - [j2]Ibrahim Burak Özyurt, Lawrence O. Hall, Aydin K. Sunol:
SQFDiag: semi-quantitative model-based fault monitoring and diagnosis via episodic fuzzy rules. IEEE Trans. Syst. Man Cybern. Part A 29(3): 294-306 (1999) - 1998
- [c1]Ibrahim Burak Özyurt, Aydin K. Sunol, Lawrence O. Hall:
Chemical Process Fault Diagnosis Using Kernel Retrofitted Fuzzy Genetic Algorithm Based Learner (FGAL) with a Hidden Markov Model. IEA/AIE (Vol. 1) 1998: 190-199 - 1996
- [j1]I. Burak Özyurt, Abraham Kandel:
A hybrid hierarchical neural network-fuzzy expert system approach to chemical process fault diagnosis. Fuzzy Sets Syst. 83(1): 11-25 (1996)
Coauthor Index
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