INTEGRALL: a database and search engine for integrons, integrases and gene cassettes.

Moura A; Soares M; Pereira C; Leitão N; Henriques I; Correia A

doi:10.1093/bioinformatics/btp105

Abstract

INTEGRALL is a freely available, text-based search system developed with the aim of collecting and organizing information on integrons in a single database. The current release (1.2) contains more than 4800 integron sequences and provides a public genetic repository for sequence data and nomenclature, offering scientists an easy and interactive access to integron's DNA sequences, their molecular arrangements as well as their genetic contexts.

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https://en.wikipedia.org/wiki/INTEGRALL

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INTEGRALL: a database and search engine for integrons, integrases and gene cassettes.

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References

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Integrons: mobilizable platforms that promote genetic diversity in bacteria.

The evolution of class 1 integrons and the rise of antibiotic resistance.

Mobile gene cassettes and integrons in evolution.

Pathogenicity islands: the tip of the iceberg.

ACLAME: a CLAssification of Mobile genetic Elements.

Integrons: agents of bacterial evolution.

ISfinder: the reference centre for bacterial insertion sequences.

Studying plasmid horizontal transfer in situ: a critical review.

The emergence and fate of horizontally acquired genes in Escherichia coli.

Citations & impact

Impact metrics

Citations of article over time

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Article citations

The expression of integron arrays is shaped by the translation rate of cassettes.

Genetic characteristics of clinical carbapenem-resistant Klebsiella pneumoniae: epidemic ST11 KPC-2-producing strains and non-negligible NDM-5-producing strains with diverse STs.

Whole-genome sequencing and pathogenicity analysis of Rhodococcus equi isolated in horses.

Emergence of bla _NDM-1-carrying Enterobacter chengduensis in China.

Emergence of a clinical Klebsiella pneumoniae harboring an acrAB-tolC in chromosome and carrying the two repetitive tandem core structures for bla _KPC-2 and bla _CTX-M-65 in a plasmid.

Other citations

Wikipedia

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Search life-sciences literature (45,103,589 articles, preprints and more)

INTEGRALL: a database and search engine for integrons, integrases and gene cassettes.

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