Developmental genetics and new sequencing technologies: the rise of nonmodel organisms.

Rowan BA; Weigel D; Koenig D

doi:10.1016/j.devcel.2011.05.021

Developmental genetics and new sequencing technologies: the rise of nonmodel organisms.

Rowan BA ¹,

Weigel D ,

Koenig D

Affiliations

1. Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.
Authors
Rowan BA¹
(1 author)

ORCIDs linked to this article

Developmental Cell, 01 Jul 2011, 21(1):65-76
https://doi.org/10.1016/j.devcel.2011.05.021 PMID: 21763609

Review

Abstract

Much of developmental biology in the past decades has been driven by forward genetic studies in a few model organisms. We review recent work with relatives of these species, motivated by a desire to understand the evolutionary and ecological context for morphological innovation. Unfortunately, despite a number of shining examples, progress in nonmodel systems has often been slow. The current revolution in DNA sequencing has, however, enormous potential in extending the reach of genetics. We discuss how developmental biology will benefit from these advances, particularly by increasing the universe of study species.

Full text links

Read article at publisher's site: https://doi.org/10.1016/j.devcel.2011.05.021

Read article for free, from open access legal sources, via Unpaywall: http://www.cell.com/article/S1534580711002139/pdf

References

Articles referenced by this article (107)

The genome sequence of Drosophila melanogaster.
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, [...] Venter JC
Science, (5461):2185-2195 2000
MED: 10731132
Integrating computational biology and forward genetics in Drosophila.
Aerts S, Vilain S, Hu S, Tranchevent LC, Barriot R, Yan J, Moreau Y, Hassan BA, Quan XJ
PLoS Genet, (1):e1000351 2009
MED: 19165344
Direct selection of human genomic loci by microarray hybridization.
Albert TJ, Molla MN, Muzny DM, Nazareth L, Wheeler D, Song X, Richmond TA, Middle CM, Rodesch MJ, Packard CJ, Weinstock GM, Gibbs RA
Nat Methods, (11):903-905 2007
MED: 17934467
Limitations of next-generation genome sequence assembly.
Alkan C, Sajjadian S, Eichler EE
Nat Methods, (1):61-65 2010
MED: 21102452
Title not supplied
Allen
1979
Multiplexed shotgun genotyping for rapid and efficient genetic mapping.
Andolfatto P, Davison D, Erezyilmaz D, Hu TT, Mast J, Sunayama-Morita T, Stern DL
Genome Res, (4):610-617 2011
MED: 21233398
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
Arabidopsis Genome Initiative
Nature, (6814):796-815 2000
MED: 11130711
Cytokinin oxidase regulates rice grain production.
Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M
Science, (5735):741-745 2005
MED: 15976269
Systems genetics of complex traits in Drosophila melanogaster.
Ayroles JF, Carbone MA, Stone EA, Jordan KW, Lyman RF, Magwire MM, Rollmann SM, Duncan LH, Lawrence F, Anholt RR, Mackay TF
Nat Genet, (3):299-307 2009
MED: 19234471
Rapid SNP discovery and genetic mapping using sequenced RAD markers.
Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Selker EU, Cresko WA, Johnson EA
PLoS One, (10):e3376 2008
MED: 18852878

Show 10 more references (10 of 107)

Citations & impact

Impact metrics

Citations

Jump to Citations

Citations of article over time

Alternative metrics

Altmetric item for https://www.altmetric.com/details/242355

Altmetric
Discover the attention surrounding your research
https://www.altmetric.com/details/242355

Article citations

An Overview of Molecular Basis and Genetic Modification of Floral Organs Genes: Impact of Next-Generation Sequencing.
Patil RV, Hadawale KN, Ramli ANM, Wadkar SS, Bhuyar P
Mol Biotechnol, 65(6):833-848, 22 Dec 2022
Cited by: 2 articles | PMID: 36544065
Review
Plant science's next top models.
Cesarino I, Dello Ioio R, Kirschner GK, Ogden MS, Picard KL, Rast-Somssich MI, Somssich M
Ann Bot, 126(1):1-23, 01 Jun 2020
Cited by: 10 articles | PMID: 32271862 | PMCID: PMC7304477
Review Free full text in Europe PMC
Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity.
Nikolov LA, Shushkov P, Nevado B, Gan X, Al-Shehbaz IA, Filatov D, Bailey CD, Tsiantis M
New Phytol, 222(3):1638-1651, 12 Mar 2019
Cited by: 64 articles | PMID: 30735246
Whole-Genome Sequence Accuracy Is Improved by Replication in a Population of Mutagenized Sorghum.
Addo-Quaye C, Tuinstra M, Carraro N, Weil C, Dilkes BP
G3 (Bethesda), 8(3):1079-1094, 02 Mar 2018
Cited by: 15 articles | PMID: 29378822 | PMCID: PMC5844295
This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
Free full text in Europe PMC
Peromyscus transcriptomics: Understanding adaptation and gene expression plasticity within and between species of deer mice.
Munshi-South J, Richardson JL
Semin Cell Dev Biol, 61:131-139, 12 Aug 2016
Cited by: 7 articles | PMID: 27531052 | PMCID: PMC5235989
Review Free full text in Europe PMC

Go to all (16) article citations

Other citations

Wikipedia

https://en.wikipedia.org/wiki/De_novo_transcriptome_assembly

Search life-sciences literature (45,100,050 articles, preprints and more)

Developmental genetics and new sequencing technologies: the rise of nonmodel organisms.

Affiliations

Authors

ORCIDs linked to this article

Abstract

Full text links

References

The genome sequence of Drosophila melanogaster.

Integrating computational biology and forward genetics in Drosophila.

Direct selection of human genomic loci by microarray hybridization.

Limitations of next-generation genome sequence assembly.

Title not supplied

Multiplexed shotgun genotyping for rapid and efficient genetic mapping.

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Cytokinin oxidase regulates rice grain production.

Systems genetics of complex traits in Drosophila melanogaster.

Rapid SNP discovery and genetic mapping using sequenced RAD markers.

Citations & impact

Impact metrics

Citations of article over time

Alternative metrics

Article citations

An Overview of Molecular Basis and Genetic Modification of Floral Organs Genes: Impact of Next-Generation Sequencing.

Plant science's next top models.

Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity.

Whole-Genome Sequence Accuracy Is Improved by Replication in a Population of Mutagenized Sorghum.

Peromyscus transcriptomics: Understanding adaptation and gene expression plasticity within and between species of deer mice.

Other citations

Wikipedia

Similar Articles

The painted turtle, Chrysemys picta: a model system for vertebrate evolution, ecology, and human health.

Draft genome of the medaka fish: a comprehensive resource for medaka developmental genetics and vertebrate evolutionary biology.

Single-molecule DNA sequencing technologies for future genomics research.

Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics.

Partnerships & funding

Similar Articles

The painted turtle, Chrysemys picta: a model system for vertebrate evolution, ecology, and human health.
Cold Spring Harb Protoc, 2009(7):pdb.emo124, 01 Jul 2009

Draft genome of the medaka fish: a comprehensive resource for medaka developmental genetics and vertebrate evolutionary biology.
Dev Growth Differ, 50 Suppl 1:S157-66, 22 Apr 2008

Single-molecule DNA sequencing technologies for future genomics research.
Trends Biotechnol, 26(11):602-611, 21 Aug 2008

Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics.
Mol Biol Evol, 26(12):2731-2744, 25 Aug 2009

Search life-sciences literature (45,100,050 articles, preprints and more)

Developmental genetics and new sequencing technologies: the rise of nonmodel organisms.

Author information

Affiliations

Authors

ORCIDs linked to this article

Abstract

Full text links

References

Title not supplied

Citations & impact

Impact metrics

Citations of article over time

Alternative metrics

Article citations

Other citations

Wikipedia

Similar Articles

Partnerships & funding