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PMC full text:
J Microbiol Methods. Author manuscript; available in PMC 2008 Oct 7.
Published in final edited form as:
J Microbiol Methods. 2007 May; 69(2): 330–339.
Published online 2007 Feb 22. doi: 10.1016/j.mimet.2007.02.005

Table 1

Bacterial 16S rRNA gene sequences used in this study

BacteriaAccn no./ TIGR CMR seq. designation
Acinetobacter calcoaceticusAJ888984
Actinomyces israeliiX82450
Arcanobacterium pyogenesX79225
Aerococcus viridansAY707778
Actinomyces meyeriX82451
Burkholderia cepaciaAB211325
B. malleiBMAA_Bm16SC
B. pseudomalleiNTBP01_Bp16SA
Brucella melitensisNTBM01_Bm16SA
B. suisGBR_Bs16SA
Bordetella parapertussisNTBP02_Bp16SA
Borrelia burgdorferi B31GBB_Bb16SA
Bacillus anthracisGBA_Ba16SA
B. cereusNTBC01_Bc16SA
B. subtillisNTBS01_Bs16SA
Bacteroides fragilisM11656
Bordetella pertussisNTBP03_Bp16SA
Clostridium botulinumAF105402
C. difficileAF072474
C. septicumU59278
C. acetobutylicumNTCA01_Ca16SA
C. perfringensNTCP03_Cp16SA
C. diptheriaeNTCD01-Cd16SA
C. tetaniNTCT02-Ct16SA
Corynebacterium jeikeiumX84250
Campylobacter jejuniNTCJ01_Cj16SA
Chlamydia trachomatisNTCT01_16SrRNA-1
C. pneumoniaeNTCP05_Cp16SA
Coxiella burnettiGCB_Cb16SA
Enterococcus gallinarumAJ301833
E. faecalisAJ291732
E. faeciumAJ291732
Enterobacter aerogenesAB004750
Escherichia coli BL21AJ605115
E. coli K12NTEC01_16SrRNA-1
E. coli O157H7NTEC02_Ec16SA
Fusobacterium sulciAJ006963
F. alocisAJ006962
F. equorumAJ295750
F. naviformeAJ006965
F. nucleatumAJ810275/NTFN01_Fn16SA
F. periodonticumAJ810271
F. prausnitziiAJ413954
F. necrophorumX74407
Francisella tularensisAJ698865
Haemophilus paraphrophilusAY365451
H. parahaemolyticusAJ290758
H. ducreyiAF525028/NTHD01_Hd16SA
H. parainfluenzaeAJ290755
H. aphrophilusAY365453
H. influenzaeAY613778/GHI_HIrrnA16S
Helicobacter pyloriNTHP01_Hp16SA
Klebsiella pneumoniaeY17657
Listeria grayiX98526
L. monocytogenesAJ535697
Leptospira interrogansAM050580
Legionella pneumophilaNTLP02_NT02LP0369
Moraxella catarrhalisU10876
Mycobacterium aviumAJ536037
M. intracellulareAJ536036
M. fortuitumAJ416915
M. gordonaeAJ581472
M. kansasiiAJ536035
M. scrofulaceumAF480604
M. bovisNTMB01_Mb16SA
M. lepraeNTML01_Ml16SA
M. tuberculosis CDC1551GMT_Mt16SA
M. tuberculosis H37RvNTMT02_NT02MT1437
Neisseria gonorrhoeaeAJ239304
N. mucosaAJ239282
N. lactamicaAJ239313
N. meningitidisGNM_NMrrnaA16S
Nocardia brasiliensisAF430038
N. pseudobrasiliensisX84855
Oligella urethralisAY513496
Proteus vulgarisX07652
P. mirabilisAJ301682
Peptostreptococcus microsAF542231
Propionibacterium acnesNTPA02_NT02PA0587
Pasteurella multocidaNTPM01_Pm16SA
Pseudomonas aeruginosaAY268175
Rickettsia prowazekiiNTRP01_Rp16SA
R. rickettsiiU11021
Rhodococcus equiX80594
Shigella dysenteriaeX96966
S. flexneriNTSF02_Sf16SD
Salmonella paratyphiX80682
S. enterica typhiNTST04_St16SA
S. typhimuriumNTST01_St16SA
Serratia marcescensAJ233431
Streptococcus uberisU41048
S. pyogenesNTSP03_Sp16SA
S. pneumoniaeBSP_Sp16SA
S. agalactiaeGBS_Sa16SA
S. mutansNTSM02_Sm16SA
S. gordoniiD38483
S. mitisGMI_Sm16SA
S. salivariusAY188352
Staphylococcus aureusSACOL_Sa16SA
S. epidermidisNTSE02_Se16SA
S. saprophyticusNTSS03_NT03SS0724
S. capraeAY346310
S. haemolyticusD83367
S. hominisAJ717375
S. intermediusD83369
S. lugdunensisAB009941
S. schleiferiD83372
S. simulansD83373
S. warneriL37603
Treponema pallidumGTP_Tp16SA
Vibrio choleraeX76337
Yersinia enterocoliticaZ75316
Yersinia pestisNTYP02_Yp16SA