LncRNA–miRNA–mRNA Networks of Gastrointestinal Cancers Representing Common and Specific LncRNAs and mRNAs

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Published online 2022 Jan 24. doi: 10.3389/fgene.2021.791919

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TABLE 3

mRNAs as prognostic biomarkers identified in ceRNA networks of TCGA-GI cancers.

TCGA cancer type	Gene	Worse prognosis	Good prognosis
COAD	HOMER1		Over-expression
COAD	NRG1	Low expression
HNSC	KDELC1, GNA12, ITGA5, and CDCA4	Over-expression
HNSC	MEIS1	Low expression
LIHC	RUNX3, CD69, RIPOR2 (FAM65B), GADD45A, SYBU, ADAMTSL3, AUTS2, SMOC1	Low expression
	SCML2, LIMK1, FANCE, PLXNA1, E2F8, EFNA3, SLC7A11, ENAH, TMEM164, H2AFZ, BUB1, CBX2, EXO1, LPL, B3GNT5, LMNB2, SOX12, JPT1, MAFG, ZNF607, STK39, and ANKRD13B	Over-expression
	CDC7 and PFKFB3		Low expression
	DNM3 and COL15A1		Over-expression
READ	ATP8B2, NTN1, NOVA1, and PCDH7		Low expression
STAD	MAP7		Over-expression