A One-Health Approach to Investigating an Outbreak of Alimentary Tick-Borne Encephalitis in a Non-endemic Area in France (Ain, Eastern France): A Longitudinal Serological Study in Livestock, Detection in Ticks, and the First Tick-Borne Encephalitis Virus Isolation and Molecular Characterisation

doi:10.3389/fmicb.2022.863725

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Front Microbiol. 2022; 13: 863725.

Published online 2022 Apr 11. doi: 10.3389/fmicb.2022.863725

Copyright/LicenseRequest permission to reuse: Copyright © 2022 Gonzalez, Bournez, Moraes, Marine, Galon, Vorimore, Cochin, Nougairède, Hennechart-Collette, Perelle, Leparc-Goffart, Durand, Grard, Bénet, Danjou, Blanchin, Lacour, Franck, Chenut, Mainguet, Simon, Brémont, Zientara, Moutailler, Martin-Latil, Dheilly, Beck and Lecollinet.
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FIGURE 5

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Phylogenetic tree of TBEV complete open reading frames that were available in GenBank and the TBEV-Ain-France-2020 obtained in the present study (marked red) using all sequences (A) or those corresponding to the European subtype only (B). The two trees were inferred in PhyML using the Le Gascuel (LG) substitution model. Branch points indicate that results of Shimodaira-Hasgawa branch test > 0.8. Scale bar shows the number of nucleotide changes. Virus isolate names are given as follows: accession number from NCBI_ country to name_year.

FIGURE 5

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