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Search life-sciences literature (45,103,589 articles, preprints and more)

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Erratum: Development and implementation of a Core Genome Multilocus Sequence Typing (cgMLST) scheme for <i>Haemophilus influenzae</i>.
Krisna MA, Jolley KA, Monteith W, Boubour A, Hamers RL, Brueggemann AB, Harrison OB, Maiden MCJ
Microb Genom, 10(10), 01 Oct 2024
Cited by: 0 articles | PMID: 39436679
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Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data.
Pascoe B, Futcher G, Pensar J, Bayliss SC, Mourkas E, Calland JK, Hitchings MD, Joseph LA, Lane CG, Greenlee T, Arning N, Wilson DJ, Jolley KA, Corander J, Maiden MCJ, Parker CT, Cooper KK, Rose EB, Hiett K, [...] Sheppard SK
J Infect, 89(5):106265, 07 Sep 2024
Cited by: 0 articles | PMID: 39245152
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Conference report: the first bacterial genome sequencing pan-European network conference.
Germuskova Z, Sosa E, Lagos AC, Aamot HV, Beale MA, Bertelli C, Björkmann J, Couto N, Feige L, Greub G, Hallbäck ET, Hodcroft EB, Harmsen D, Jacob L, Jolley KA, Kahles A, Mather AE, Neher RA, Neves A, [...] Egli A
Microbes Infect, 105410, 30 Aug 2024
Cited by: 0 articles | PMID: 39218348
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Development and implementation of a core genome multilocus sequence typing scheme for Haemophilus influenzae.
Krisna MA, Jolley KA, Monteith W, Boubour A, Hamers RL, Brueggemann AB, Harrison OB, Maiden MCJ
Microb Genom, 10(8), 01 Aug 2024
Cited by: 0 articles | PMID: 39120932 | PMCID: PMC11315579
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Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structure.
Jansen van Rensburg MJ, Berger DJ, Yassine I, Shaw D, Fohrmann A, Bray JE, Jolley KA, Maiden MCJ, Brueggemann AB
Microb Genom, 10(8), 01 Aug 2024
Cited by: 1 article | PMID: 39137139 | PMCID: PMC11321556
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Development and Implementation of a Core Genome Multilocus Sequence Typing (cgMLST) scheme forHaemophilusinfluenzae
Krisna MA, Jolley KA, Monteith W, Boubour A, Hamers RL, Brueggemann AB, Harrison OB, Maiden MCJ
bioRxiv, 16 Apr 2024
Cited by: 0 articles | PPR: PPR838500
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Genomic diversity and antimicrobial susceptibility of invasive Neisseria meningitidis in South Africa, 2016-2021.
Mikhari RL, Meiring S, de Gouveia L, Chan WY, Jolley KA, Van Tyne D, Harrison LH, Marjuki H, Ismail A, Quan V, Cohen C, Walaza S, von Gottberg A, du Plessis M
J Infect Dis, jiae225, 30 Apr 2024
Cited by: 0 articles | PMID: 38687883
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Epistasis, core-genome disharmony, and adaptation in recombining bacteria.
Taylor AJ, Yahara K, Pascoe B, Ko S, Mageiros L, Mourkas E, Calland JK, Puranen S, Hitchings MD, Jolley KA, Kobras CM, Bayliss S, Williams NJ, van Vliet AHM, Parkhill J, Maiden MCJ, Corander J, Hurst LD, Falush D, [...] Sheppard SK
mBio, 15(6):e0058124, 29 Apr 2024
Cited by: 1 article | PMID: 38683013 | PMCID: PMC11237541
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Recombinational exchange of M-fibril and T-pilus genes generates extensive cell surface diversity in the global group A Streptococcus population.
Bessen DE, Beall BW, Hayes A, Huang W, DiChiara JM, Velusamy S, Tettelin H, Jolley KA, Fallon JT, Chochua S, Alobaidallah MSA, Higgs C, Barnett TC, Steemson JT, Proft T, Davies MR
mBio, 15(5):e0069324, 09 Apr 2024
Cited by: 0 articles | PMID: 38587426 | PMCID: PMC11078000
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Bacterial strain nomenclature in the genomic era: Life Identification Numbers using a gene-by-gene approach
Palma F, Hennart M, Jolley KA, Crestani C, Wyres KL, Bridel S, Yeats CA, Brancotte B, Raffestin B, David S, Lam MMC, Izdebski R, Passet V, Rodrigues C, Rethoret-Pasty M, Maiden MCJ, Aanensen DM, Holt KE, Criscuolo A, Brisse S
bioRxiv, 12 Mar 2024
Cited by: 0 articles | PPR: PPR818598
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Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus.
Lin GL, Drysdale SB, Snape MD, O'Connor D, Brown A, MacIntyre-Cockett G, Mellado-Gomez E, de Cesare M, Ansari MA, Bonsall D, Bray JE, Jolley KA, Bowden R, Aerssens J, Bont L, Openshaw PJM, Martinon-Torres F, Nair H, Golubchik T, [...] RESCEU Consortium
Nat Commun, 15(1):2379, 16 Mar 2024
Cited by: 5 articles | PMID: 38493135 | PMCID: PMC10944482
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Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structure
Jansen van Rensburg MJ, Berger DJ, Fohrmann A, Bray JE, Jolley KA, Maiden MC, Brueggemann AB
bioRxiv, 19 Dec 2023
Cited by: 0 articles | PPR: PPR775902
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Phylogenomics of Acinetobacter species and analysis of antimicrobial resistance genes.
Migliaccio A, Bray J, Intoccia M, Stabile M, Scala G, Jolley KA, Brisse S, Zarrilli R
Front Microbiol, 14:1264030, 19 Oct 2023
Cited by: 4 articles | PMID: 37928684 | PMCID: PMC10620307
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Acinetobacter baumannii IC2 and IC5 Isolates with Co-Existing bla_OXA-143-like and bla_OXA-72 and Exhibiting Strong Biofilm Formation in a Mexican Hospital.
Moreno-Manjón J, Castillo-Ramírez S, Jolley KA, Maiden MCJ, Gayosso-Vázquez C, Fernández-Vázquez JL, Mateo-Estrada V, Giono-Cerezo S, Alcántar-Curiel MD
Microorganisms, 11(9):2316, 14 Sep 2023
Cited by: 2 articles | PMID: 37764160 | PMCID: PMC10536109
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Trends in invasive bacterial diseases during the first 2 years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries and territories in the IRIS Consortium.
Shaw D, Abad R, Amin-Chowdhury Z, Bautista A, Bennett D, Broughton K, Cao B, Casanova C, Choi EH, Chu YW, Claus H, Coelho J, Corcoran M, Cottrell S, Cunney R, Cuypers L, Dalby T, Davies H, de Gouveia L, [...] Brueggemann AB
Lancet Digit Health, 5(9):e582-e593, 27 Jul 2023
Cited by: 19 articles | PMID: 37516557
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There are three major Neisseria gonorrhoeae β-lactamase plasmid variants which are associated with specific lineages and carry distinct TEM alleles.
Elsener TA, Jolley KA, Sanders E, Maiden MCJ, Cehovin A, Tang CM
Microb Genom, 9(7), 01 Jul 2023
Cited by: 1 article | PMID: 37436798 | PMCID: PMC10438826
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Core-Genome Multilocus Sequence Typing for Epidemiological and Evolutionary Analyses of Phytopathogenic Xanthomonas citri.
Ragupathy R, Jolley KA, Zamuner C, Jones JB, Redfern J, Behlau F, Ferreira H, Enright MC
Appl Environ Microbiol, 89(5):e0210122, 17 Apr 2023
Cited by: 1 article | PMID: 37067413 | PMCID: PMC10231234
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Penicillin Binding Protein Substitutions Cooccur with Fluoroquinolone Resistance in Epidemic Lineages of Multidrug-Resistant Clostridioides difficile.
Dingle KE, Freeman J, Didelot X, Quan TP, Eyre DW, Swann J, Spittal WD, Clark EV, Jolley KA, Walker AS, Wilcox MH, Crook DW
mBio, 14(2):e0024323, 05 Apr 2023
Cited by: 2 articles | PMID: 37017518 | PMCID: PMC10128037
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Core genome multilocus sequence typing scheme for Bacillus cereus group bacteria.
Tourasse NJ, Jolley KA, Kolstø AB, Økstad OA
Res Microbiol, 174(6):104050, 08 Mar 2023
Cited by: 5 articles | PMID: 36893969
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Association between disease severity and co-detection of respiratory pathogens in infants with RSV infection
Lin G, Drysdale SB, Snape MD, O’Connor D, Brown A, MacIntyre-Cockett G, Mellado-Gomez E, de Cesare M, Ansari MA, Bonsall D, Bray JE, Jolley KA, Bowden R, Aerssens J, Bont L, Openshaw PJM, Martinon-Torres F, Nair H, Golubchik T, Pollard AJ
medRxiv, 15 Feb 2023
Cited by: 0 articles | PPR: PPR617632
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Sustained reductions in life-threatening invasive bacterial diseases during the first two years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries participating in the IRIS Consortium
Shaw D, Abad R, Abad R, Amin-Chowdhury Z, Bautista A, Bennett D, Broughton K, Cao B, Casanova C, Choi EH, Chu Y, Claus H, Coelho J, Corcoran M, Cottrell S, Cunney R, Cuypers L, Dalby T, Davies H, [...] Brueggemann AB
medRxiv, 17 Dec 2022
Cited by: 0 articles | PPR: PPR585733
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Core genome MLST for epidemiological and evolutionary analyses of phytopathogenicXanthomonas citri
Ragupathy R, Jolley KA, Zamuner C, Jones JB, Redfern J, Behlau F, Ferreira H, Enright M
bioRxiv, 21 Dec 2022
Cited by: 0 articles | PPR: PPR587401
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Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis.
Kalizang'oma A, Kwambana-Adams B, Chan JM, Viswanath A, Gori A, Richard D, Jolley KA, Lees J, Goldblatt D, Beleza S, Bentley SD, Heyderman RS, Chaguza C
J Clin Microbiol, 61(1):e0080222, 14 Dec 2022
Cited by: 2 articles | PMID: 36515506 | PMCID: PMC9879099
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Ribosomal MLST nucleotide identity (rMLST-NI), a rapid bacterial species identification method: application to Klebsiella and Raoultella genomic species validation.
Bray JE, Correia A, Varga M, Jolley KA, Maiden MCJ, Rodrigues CMC
Microb Genom, 8(9), 01 Sep 2022
Cited by: 3 articles | PMID: 36098501 | PMCID: PMC9676034
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A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains.
Hennart M, Guglielmini J, Bridel S, Maiden MCJ, Jolley KA, Criscuolo A, Brisse S
Mol Biol Evol, 39(7):msac135, 01 Jul 2022
Cited by: 33 articles | PMID: 35700230 | PMCID: PMC9254007
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1-25 of 186 results

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Search life-sciences literature (45,103,589 articles, preprints and more)

Search results

Erratum: Development and implementation of a Core Genome Multilocus Sequence Typing (cgMLST) scheme for <i>Haemophilus influenzae</i>.

Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data.

Conference report: the first bacterial genome sequencing pan-European network conference.

Development and implementation of a core genome multilocus sequence typing scheme for Haemophilus influenzae.

Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structure.

Development and Implementation of a Core Genome Multilocus Sequence Typing (cgMLST) scheme forHaemophilusinfluenzae

Genomic diversity and antimicrobial susceptibility of invasive Neisseria meningitidis in South Africa, 2016-2021.

Epistasis, core-genome disharmony, and adaptation in recombining bacteria.

Recombinational exchange of M-fibril and T-pilus genes generates extensive cell surface diversity in the global group A Streptococcus population.

Bacterial strain nomenclature in the genomic era: Life Identification Numbers using a gene-by-gene approach

Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus.

Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structure

Phylogenomics of Acinetobacter species and analysis of antimicrobial resistance genes.

Acinetobacter baumannii IC2 and IC5 Isolates with Co-Existing bla_OXA-143-like and bla_OXA-72 and Exhibiting Strong Biofilm Formation in a Mexican Hospital.

Trends in invasive bacterial diseases during the first 2 years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries and territories in the IRIS Consortium.

There are three major Neisseria gonorrhoeae β-lactamase plasmid variants which are associated with specific lineages and carry distinct TEM alleles.

Core-Genome Multilocus Sequence Typing for Epidemiological and Evolutionary Analyses of Phytopathogenic Xanthomonas citri.

Penicillin Binding Protein Substitutions Cooccur with Fluoroquinolone Resistance in Epidemic Lineages of Multidrug-Resistant Clostridioides difficile.

Core genome multilocus sequence typing scheme for Bacillus cereus group bacteria.

Association between disease severity and co-detection of respiratory pathogens in infants with RSV infection

Sustained reductions in life-threatening invasive bacterial diseases during the first two years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries participating in the IRIS Consortium

Core genome MLST for epidemiological and evolutionary analyses of phytopathogenicXanthomonas citri

Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis.

Ribosomal MLST nucleotide identity (rMLST-NI), a rapid bacterial species identification method: application to Klebsiella and Raoultella genomic species validation.

A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains.

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