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Search life-sciences literature (45,103,589 articles, preprints and more)

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CNS Relapse in High-Grade B-cell Lymphoma with MYC and BCL2 Rearrangements and Dark-Zone Signature-Expressing DLBCL.
Alduaij W, Jiang A, Villa D, Collinge BJ, Ben-Neriah S, Boyle M, Meissner B, Hilton LK, Farinha P, Slack GW, Craig JW, Gerrie AS, Freeman CL, Mungall AJ, Steidl C, Sehn LH, Scott DW, Savage KJ
Blood, blood.2024025725, 23 Oct 2024
Cited by: 0 articles | PMID: 39441916
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Unbalanced MYC break-apart FISH patterns indicate the presence of a MYC rearrangement in HGBCL-DH-BCL2.
Collinge B, Ben-Neriah S, Hilton LK, Alduaij W, Tucker T, Slack GW, Farinha P, Craig JW, Boyle M, Meissner B, Villa D, Gerrie AS, Sehn LH, Savage KJ, Morin RD, Mungall AJ, Steidl C, Scott DW
Blood, 144(15):1611-1616, 01 Oct 2024
Cited by: 1 article | PMID: 39133931
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Long-read sequencing of an advanced cancer cohort resolves rearrangements, unravels haplotypes, and reveals methylation landscapes.
O'Neill K, Pleasance E, Fan J, Akbari V, Chang G, Dixon K, Csizmok V, MacLennan S, Porter V, Galbraith A, Grisdale CJ, Culibrk L, Dupuis JH, Corbett R, Hopkins J, Bowlby R, Pandoh P, Smailus DE, Cheng D, [...] Jones SJM
Cell Genom, 4(11):100674, 14 Oct 2024
Cited by: 1 article | PMID: 39406235
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Identification of genetic subtypes in follicular lymphoma.
Shelton V, Detroja R, Liu T, Isaev K, Silva A, Passerini V, Bakhtiari M, Calvente L, Hong M, He MY, Modi S, Hershenfeld SA, Ludvigsen M, Madsen C, Hamilton-Dutoit S, d'Amore FA, Brodtkorb M, Johnson NA, Baetz T, [...] Kridel R
Blood Cancer J, 14(1):128, 07 Aug 2024
Cited by: 1 article | PMID: 39112453 | PMCID: PMC11306633
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Motive and opportunity: MYC rearrangements in high-grade B-cell lymphoma with MYC and BCL2 rearrangements (an LLMPP study).
Hilton LK, Collinge B, Ben-Neriah S, Alduaij W, Shaalan H, Weng AP, Cruz M, Slack GW, Farinha P, Miyata-Takata T, Boyle M, Meissner B, Cook JR, Ondrejka SL, Ott G, Rosenwald A, Campo E, Amador C, Greiner TC, [...] Scott DW
Blood, 144(5):525-540, 01 Aug 2024
Cited by: 2 articles | PMID: 38701426
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Proteomics and personalized patient-derived xenograft models identify treatment opportunities for a progressive malignancy within a clinically actionable timeframe and change care
Barnabas GD, Bhat TA, Goebeler V, Leclair P, Azzam N, Melong N, Anderson C, Gom A, An S, Ergin EK, Shen Y, Mungall AJ, Mungall KL, Maxwell CA, Reid GS, Hirst M, Jones S, Chan JA, Senger DL, [...] PROFYLE Program
medRxiv, 08 Jul 2024
Cited by: 0 articles | PPR: PPR878083
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Single-cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancers.
Kabeer F, Tran H, Andronescu M, Singh G, Lee H, Salehi S, Wang B, Biele J, Brimhall J, Gee D, Cerda V, O'Flanagan C, Algara T, Kono T, Beatty S, Zaikova E, Lai D, Lee E, Moore R, [...] Aparicio S
Genome Biol, 25(1):191, 18 Jul 2024
Cited by: 0 articles | PMID: 39026273 | PMCID: PMC11256464
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Ultrasensitive plasma-based monitoring of tumor burden using machine-learning-guided signal enrichment.
Widman AJ, Shah M, Frydendahl A, Halmos D, Khamnei CC, Øgaard N, Rajagopalan S, Arora A, Deshpande A, Hooper WF, Quentin J, Bass J, Zhang M, Langanay T, Andersen L, Steinsnyder Z, Liao W, Rasmussen MH, Rasmussen MH, [...] Landau DA
Nat Med, 30(6):1655-1666, 14 Jun 2024
Cited by: 3 articles | PMID: 38877116 | PMCID: PMC7616143
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Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers.
Deyell RJ, Shen Y, Titmuss E, Dixon K, Williamson LM, Pleasance E, Nelson JMT, Abbasi S, Krzywinski M, Armstrong L, Bonakdar M, Ch'ng C, Chuah E, Dunham C, Fok A, Jones M, Lee AF, Ma Y, Moore RA, [...] Rassekh SR
Nat Commun, 15(1):4165, 16 May 2024
Cited by: 0 articles | PMID: 38755180 | PMCID: PMC11099106
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Exploration of Germline Correlates and Risk of Immune-Related Adverse Events in Advanced Cancer Patients Treated with Immune Checkpoint Inhibitors.
Titmuss E, Yu IS, Pleasance ED, Williamson LM, Mungall K, Mungall AJ, Renouf DJ, Moore R, Jones SJM, Marra MA, Laskin JJ, Savage KJ
Curr Oncol, 31(4):1865-1875, 30 Mar 2024
Cited by: 0 articles | PMID: 38668043 | PMCID: PMC11048877
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Mappingin silicogenetic networks of theKMT2Dtumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities
Takemon Y, Pleasance ED, Gagliardi A, Hughes CS, Csizmok V, Wee K, Trinh DL, Huff RD, Mungall AJ, Moore RA, Chuah E, Mungall KL, Lewis E, Nelson J, Lim HJ, Renouf DJ, Jones SJ, Laskin J, Marra MA
bioRxiv, 20 Jan 2024
Cited by: 0 articles | PPR: PPR790302
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Assembly and annotation of the black spruce genome provide insights on spruce phylogeny and evolution of stress response.
Lo T, Coombe L, Gagalova KK, Marr A, Warren RL, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Pavy N, Jones SJM, Bohlmann J, Bousquet J, Birol I, Thomson A
G3 (Bethesda), 14(1):jkad247, 01 Dec 2023
Cited by: 0 articles | PMID: 37875130 | PMCID: PMC10755193
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SETD1A variant-associated psychosis: A systematic review of the clinical literature and description of two new cases.
Colijn MA, Carrion P, Poirier-Morency G, Rogic S, Torres I, Menon M, Lisonek M, Cook C, DeGraaf A, Thammaiah SP, Neelakant H, Willaeys V, Leonova O, White RF, Yip S, Mungall AJ, MacLeod PM, Gibson WT, Sullivan PF, [...] Stowe RM
Prog Neuropsychopharmacol Biol Psychiatry, 129:110888, 31 Oct 2023
Cited by: 1 article | PMID: 37918557
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Genomic structures and regulation patterns at HPV integration sites in cervical cancer
Porter VL, O’Neill K, MacLennan S, Corbett RD, Ng M, Culibrk L, Hamadeh Z, Iden M, Schmidt R, Tsaih S, Chang G, Fan J, Nip KM, Akbari V, Chan SK, Hopkins J, Moore RA, Chuah E, Mungall KL, [...] Marra MA
bioRxiv, 05 Nov 2023
Cited by: 0 articles | PPR: PPR753417
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Single cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancers
Kabeer F, Tran H, Andronescu M, Singh G, Lee H, Salehi S, Biele J, Brimhall J, Gee D, Cerda V, O’Flanagan C, Algara T, Kono T, Beatty S, Zaikova E, Lai D, Lee E, Moore R, Mungall AJ, [...] Aparicio S
bioRxiv, 20 Sep 2023
Cited by: 0 articles | PPR: PPR727697
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Genetic subdivisions of follicular lymphoma defined by distinct coding and noncoding mutation patterns.
Dreval K, Hilton LK, Cruz M, Shaalan H, Ben-Neriah S, Boyle M, Collinge B, Coyle KM, Duns G, Farinha P, Grande BM, Meissner B, Pararajalingam P, Rushton CK, Slack GW, Wong J, Mungall AJ, Marra MA, Connors JM, [...] Morin RD
Blood, 142(6):561-573, 01 Aug 2023
Cited by: 11 articles | PMID: 37084389 | PMCID: PMC10644066
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A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing.
Xu J, Pandoh PK, Corbett RD, Smailus D, Bowlby R, Brooks D, McDonald H, Haile S, Chahal S, Bilobram S, Mungall KL, Mungall AJ, Coope R, Moore RA, Zhao Y, Jones SJ, Marra MA
Biotechniques, 75(2):47-55, 08 Aug 2023
Cited by: 0 articles | PMID: 37551834
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Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers.
Yuan Y, Ju YS, Kim Y, Li J, Wang Y, Yoon CJ, Yang Y, Martincorena I, Creighton CJ, Weinstein JN, Xu Y, Han L, Kim HL, Nakagawa H, Park K, Campbell PJ, Liang H, PCAWG Consortium
Nat Genet, 55(6):1078, 01 Jun 2023
Cited by: 1 article | PMID: 36944732 | PMCID: PMC10260393
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Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer.
Akdemir KC, Le VT, Chandran S, Li Y, Verhaak RG, Beroukhim R, Campbell PJ, Chin L, Dixon JR, Futreal PA, PCAWG Structural Variation Working Group, PCAWG Consortium
Nat Genet, 55(6):1079, 01 Jun 2023
Cited by: 1 article | PMID: 36944735 | PMCID: PMC10260394
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Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.
Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, Zamora J, Supek F, Demeulemeester J, Santamarina M, Ju YS, Temes J, Garcia-Souto D, Detering H, Li Y, Rodriguez-Castro J, Dueso-Barroso A, Bruzos AL, Dentro SC, Blanco MG, Contino G, Ardeljan D, [...] PCAWG Consortium
Nat Genet, 55(6):1080, 01 Jun 2023
Cited by: 1 article | PMID: 36944736 | PMCID: PMC10260396
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Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.
Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, PCAWG Structural Variation Working Group, Park PJ, PCAWG Consortium
Nat Genet, 55(6):1076, 01 Jun 2023
Cited by: 2 articles | PMID: 36944733 | PMCID: PMC10260391
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Author Correction: The landscape of viral associations in human cancers.
Zapatka M, Borozan I, Brewer DS, Iskar M, Grundhoff A, Alawi M, Desai N, Sültmann H, Moch H, PCAWG Pathogens, Cooper CS, Eils R, Ferretti V, Lichter P, PCAWG Consortium
Nat Genet, 55(6):1077, 01 Jun 2023
Cited by: 0 articles | PMID: 36944734 | PMCID: PMC10260395
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Molecular determinants of clinical outcomes in a real-world diffuse large B-cell lymphoma population.
Alduaij W, Collinge B, Ben-Neriah S, Jiang A, Hilton LK, Boyle M, Meissner B, Chong L, Miyata-Takata T, Slack GW, Farinha P, Craig JW, Lytle A, Savage KJ, Villa D, Gerrie AS, Freeman CL, Gascoyne RD, Connors JM, [...] Scott DW
Blood, 141(20):2493-2507, 01 May 2023
Cited by: 26 articles | PMID: 36302166
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Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes.
Yakneen S, Waszak SM, PCAWG Technical Working Group, Gertz M, Korbel JO, PCAWG Consortium
Nat Biotechnol, 41(4):577, 01 Apr 2023
Cited by: 0 articles | PMID: 36944844 | PMCID: PMC10110458
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Defining the heterogeneity of unbalanced structural variation underlying breast cancer susceptibility by nanopore genome sequencing.
Dixon K, Shen Y, O'Neill K, Mungall KL, Chan S, Bilobram S, Zhang W, Bezeau M, Sharma A, Fok A, Mungall AJ, Moore R, Bosdet I, Thibodeau ML, Sun S, Yip S, Schrader KA, Jones SJM
Eur J Hum Genet, 31(5):602-606, 16 Feb 2023
Cited by: 6 articles | PMID: 36797466 | PMCID: PMC10172360
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