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Single cell and spatial transcriptomics highlight the interaction of club-like cells with immunosuppressive myeloid cells in prostate cancer.
Kiviaho A, Eerola SK, Kallio HML, Andersen MK, Hoikka M, Tiihonen AM, Salonen I, Spotbeen X, Giesen A, Parker CTA, Taavitsainen S, Hantula O, Marttinen M, Hermelo I, Ismail M, Midtbust E, Wess M, Devlies W, Sharma A, [...] Nykter M
Nat Commun, 15(1):9949, 16 Nov 2024
Cited by: 0 articles | PMID: 39550375 | PMCID: PMC11569175
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Immunosuppression in the prostate tumor microenvironment is tied to androgen deprivation therapy-resistant club-like cells
Kiviaho A, Eerola SK, Kallio HM, Andersen MK, Spotbeen X, Giesen A, Parker CT, Taavitsainen S, Hantula O, Marttinen M, Hermelo I, Ismail M, Midtbust E, Wess M, Devlies W, Sharma A, Krossa S, Häkkinen T, Afyounian E, [...] Nykter M
bioRxiv, 28 Mar 2024
Cited by: 0 articles | PPR: PPR828841
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Genomic evolution shapes prostate cancer disease type.
Woodcock DJ, Sahli A, Teslo R, Bhandari V, Gruber AJ, Ziubroniewicz A, Gundem G, Xu Y, Butler A, Anokian E, Pope BJ, Jung CH, Tarabichi M, Dentro SC, Farmery JHR, CRUK ICGC Prostate Group, Van Loo P, Warren AY, Gnanapragasam V, [...] Wedge DC
Cell Genom, 4(3):100511, 29 Feb 2024
Cited by: 0 articles | PMID: 38428419 | PMCID: PMC10943594
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Cancer origin tracing and timing in two high-risk prostate cancers using multisample whole genome analysis: prospects for personalized medicine.
Nurminen A, Jaatinen S, Taavitsainen S, Högnäs G, Lesluyes T, Ansari-Pour N, Tolonen T, Haase K, Koskenalho A, Kankainen M, Jasu J, Rauhala H, Kesäniemi J, Nikupaavola T, Kujala P, Rinta-Kiikka I, Riikonen J, Kaipia A, Murtola T, [...] Bova GS
Genome Med, 15(1):82, 12 Oct 2023
Cited by: 3 articles | PMID: 37828555 | PMCID: PMC10571458
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Fanconi anemia pathway regulation by FANCI in prostate cancer.
Kaljunen H, Taavitsainen S, Kaarijärvi R, Takala E, Paakinaho V, Nykter M, Bova GS, Ketola K
Front Oncol, 13:1260826, 30 Oct 2023
Cited by: 2 articles | PMID: 38023254 | PMCID: PMC10643534
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Identification of long noncoding RNAs with aberrant expression in prostate cancer metastases.
Sattari M, Kohvakka A, Moradi E, Rauhala H, Urhonen H, Isaacs WB, Nykter M, Murtola TJ, Tammela TLJ, Latonen L, Bova GS, Kesseli J, Visakorpi T
Endocr Relat Cancer, 30(8):e220247, 26 Jun 2023
Cited by: 2 articles | PMID: 37140987 | PMCID: PMC10326635
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Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.
Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, PCAWG Structural Variation Working Group, Park PJ, PCAWG Consortium
Nat Genet, 55(6):1076, 01 Jun 2023
Cited by: 2 articles | PMID: 36944733 | PMCID: PMC10260391
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Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer.
Akdemir KC, Le VT, Chandran S, Li Y, Verhaak RG, Beroukhim R, Campbell PJ, Chin L, Dixon JR, Futreal PA, PCAWG Structural Variation Working Group, PCAWG Consortium
Nat Genet, 55(6):1079, 01 Jun 2023
Cited by: 1 article | PMID: 36944735 | PMCID: PMC10260394
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Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers.
Yuan Y, Ju YS, Kim Y, Li J, Wang Y, Yoon CJ, Yang Y, Martincorena I, Creighton CJ, Weinstein JN, Xu Y, Han L, Kim HL, Nakagawa H, Park K, Campbell PJ, Liang H, PCAWG Consortium
Nat Genet, 55(6):1078, 01 Jun 2023
Cited by: 1 article | PMID: 36944732 | PMCID: PMC10260393
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Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.
Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, Zamora J, Supek F, Demeulemeester J, Santamarina M, Ju YS, Temes J, Garcia-Souto D, Detering H, Li Y, Rodriguez-Castro J, Dueso-Barroso A, Bruzos AL, Dentro SC, Blanco MG, Contino G, Ardeljan D, [...] PCAWG Consortium
Nat Genet, 55(6):1080, 01 Jun 2023
Cited by: 1 article | PMID: 36944736 | PMCID: PMC10260396
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Author Correction: The landscape of viral associations in human cancers.
Zapatka M, Borozan I, Brewer DS, Iskar M, Grundhoff A, Alawi M, Desai N, Sültmann H, Moch H, PCAWG Pathogens, Cooper CS, Eils R, Ferretti V, Lichter P, PCAWG Consortium
Nat Genet, 55(6):1077, 01 Jun 2023
Cited by: 0 articles | PMID: 36944734 | PMCID: PMC10260395
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Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes.
Yakneen S, Waszak SM, PCAWG Technical Working Group, Gertz M, Korbel JO, PCAWG Consortium
Nat Biotechnol, 41(4):577, 01 Apr 2023
Cited by: 0 articles | PMID: 36944844 | PMCID: PMC10110458
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Author Correction: The repertoire of mutational signatures in human cancer.
Alexandrov LB, Kim J, Haradhvala NJ, Huang MN, Tian Ng AW, Wu Y, Boot A, Covington KR, Gordenin DA, Bergstrom EN, Islam SMA, Lopez-Bigas N, Klimczak LJ, McPherson JR, Morganella S, Sabarinathan R, Wheeler DA, Mustonen V, PCAWG Mutational Signatures Working Group, [...] PCAWG Consortium
Nature, 614(7948):E41, 01 Feb 2023
Cited by: 3 articles | PMID: 36697836 | PMCID: PMC9931578
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Author Correction: Genomic basis for RNA alterations in cancer.
PCAWG Transcriptome Core Group, Calabrese C, Davidson NR, Demircioğlu D, Fonseca NA, He Y, Kahles A, Lehmann KV, Liu F, Shiraishi Y, Soulette CM, Urban L, Greger L, Li S, Liu D, Perry MD, Xiang Q, Zhang F, Zhang J, [...] PCAWG Consortium
Nature, 614(7948):E37, 01 Feb 2023
Cited by: 0 articles | PMID: 36697831 | PMCID: PMC9931574
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Author Correction: Pan-cancer analysis of whole genomes.
ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium
Nature, 614(7948):E39, 01 Feb 2023
Cited by: 3 articles | PMID: 36697834 | PMCID: PMC9931570
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Author Correction: Patterns of somatic structural variation in human cancer genomes.
Li Y, Roberts ND, Wala JA, Shapira O, Schumacher SE, Kumar K, Khurana E, Waszak S, Korbel JO, Haber JE, Imielinski M, PCAWG Structural Variation Working Group, Weischenfeldt J, Beroukhim R, Campbell PJ, PCAWG Consortium
Nature, 614(7948):E38, 01 Feb 2023
Cited by: 1 article | PMID: 36697835 | PMCID: PMC9931568
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Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
Rheinbay E, Nielsen MM, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RI, Lin Z, Feuerbach L, Sabarinathan R, Madsen T, Kim J, Mularoni L, Shuai S, Lanzós A, Herrmann C, Maruvka YE, [...] PCAWG Consortium
Nature, 614(7948):E40, 01 Feb 2023
Cited by: 9 articles | PMID: 36697832 | PMCID: PMC9931557
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Author Correction: Inferring structural variant cancer cell fraction.
Cmero M, Yuan K, Ong CS, Schröder J, PCAWG Evolution and Heterogeneity Working Group, Corcoran NM, Papenfuss T, Hovens CM, Markowetz F, Macintyre G, PCAWG Consortium
Nat Commun, 13(1):7568, 08 Dec 2022
Cited by: 0 articles | PMID: 36481724 | PMCID: PMC9732297
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Author Correction: Integrative pathway enrichment analysis of multivariate omics data.
Paczkowska M, Barenboim J, Sintupisut N, Fox NS, Zhu H, Abd-Rabbo D, Mee MW, Boutros PC, PCAWG Drivers and Functional Interpretation Working Group, Reimand J, PCAWG Consortium
Nat Commun, 13(1):7570, 08 Dec 2022
Cited by: 0 articles | PMID: 36481658 | PMCID: PMC9731958
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Author Correction: Divergent mutational processes distinguish hypoxic and normoxic tumours.
Bhandari V, Li CH, Bristow RG, Boutros PC, PCAWG Consortium
Nat Commun, 13(1):7569, 08 Dec 2022
Cited by: 0 articles | PMID: 36481612 | PMCID: PMC9731962
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Author Correction: The evolutionary history of 2,658 cancers.
Gerstung M, Jolly C, Leshchiner I, Dentro SC, Gonzalez S, Rosebrock D, Mitchell TJ, Rubanova Y, Anur P, Yu K, Tarabichi M, Deshwar A, Wintersinger J, Kleinheinz K, Vázquez-García I, Haase K, Jerman L, Sengupta S, Macintyre G, [...] PCAWG Consortium
Nature, 614(7948):E42, 01 Feb 2023
Cited by: 3 articles | PMID: 36697833 | PMCID: PMC9931577
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Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower.
Shuai S, PCAWG Drivers and Functional Interpretation Working Group, Gallinger S, Stein LD, PCAWG Consortium
Nat Commun, 13(1):7571, 08 Dec 2022
Cited by: 0 articles | PMID: 36481739 | PMCID: PMC9732291
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Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns.
Jiao W, Atwal G, Polak P, Karlic R, Cuppen E, PCAWG Tumor Subtypes and Clinical Translation Working Group, Danyi A, de Ridder J, van Herpen C, Lolkema MP, Steeghs N, Getz G, Morris QD, Stein LD, PCAWG Consortium
Nat Commun, 13(1):7573, 08 Dec 2022
Cited by: 0 articles | PMID: 36481665 | PMCID: PMC9732335
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Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes.
Reyna MA, Haan D, Paczkowska M, Verbeke LPC, Vazquez M, Kahraman A, Pulido-Tamayo S, Barenboim J, Wadi L, Dhingra P, Shrestha R, Getz G, Lawrence MS, Pedersen JS, Rubin MA, Wheeler DA, Brunak S, Izarzugaza JMG, Khurana E, [...] PCAWG Consortium
Nat Commun, 13(1):7566, 08 Dec 2022
Cited by: 0 articles | PMID: 36481610 | PMCID: PMC9732045
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Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis.
Carlevaro-Fita J, Lanzós A, Feuerbach L, Hong C, Mas-Ponte D, Pedersen JS, PCAWG Drivers and Functional Interpretation Group, Johnson R, PCAWG Consortium
Commun Biol, 5(1):1347, 08 Dec 2022
Cited by: 1 article | PMID: 36482178 | PMCID: PMC9732278
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