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ChromaFold predicts the 3D contact map from single-cell chromatin accessibility.
Gao VR, Yang R, Das A, Luo R, Luo H, McNally DR, Karagiannidis I, Rivas MA, Wang ZM, Barisic D, Karbalayghareh A, Wong W, Zhan YA, Chin CR, Noble WS, Bilmes JA, Apostolou E, Kharas MG, Béguelin W, [...] Leslie CS
Nat Commun, 15(1):9432, 01 Nov 2024
Cited by: 0 articles | PMID: 39487131 | PMCID: PMC11530433
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Hypoxic Memory Mediates Prolonged Tumor-Intrinsic Type I Interferon Suppression to Promote Breast Cancer Progression.
Iriondo O, Mecenas D, Li Y, Chin CR, Thomas A, Moriarty A, Marker R, Wang YJ, Hendrick H, Amzaleg Y, Ortiz V, MacKay M, Dickerson A, Lee G, Harotoonian S, Benayoun BA, Smith A, Mason CE, Roussos Torres ET, [...] Yu M
Cancer Res, 84(19):3141-3157, 01 Oct 2024
Cited by: 0 articles | PMID: 38990731
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Transcriptomics analysis reveals molecular alterations underpinning spaceflight dermatology.
Cope H, Elsborg J, Demharter S, McDonald JT, Wernecke C, Parthasarathy H, Unadkat H, Chatrathi M, Claudio J, Reinsch S, Avci P, Zwart SR, Smith SM, Heer M, Muratani M, Meydan C, Overbey E, Kim J, Chin CR, [...] Beheshti A
Commun Med (Lond), 4(1):106, 11 Jun 2024
Cited by: 1 article | PMID: 38862781 | PMCID: PMC11166967
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A second space age spanning omics, platforms and medicine across orbits.
Mason CE, Green J, Adamopoulos KI, Afshin EE, Baechle JJ, Basner M, Bailey SM, Bielski L, Borg J, Borg J, Broddrick JT, Burke M, Caicedo A, Castañeda V, Chatterjee S, Chin CR, Church G, Costes SV, De Vlaminck I, [...] Beheshti A
Nature, 632(8027):995-1008, 11 Jun 2024
Cited by: 8 articles | PMID: 38862027
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Single-cell multi-ome and immune profiles of the Inspiration4 crew reveal conserved, cell-type, and sex-specific responses to spaceflight.
Kim J, Tierney BT, Overbey EG, Dantas E, Fuentealba M, Park J, Narayanan SA, Wu F, Najjar D, Chin CR, Meydan C, Loy C, Mathyk B, Klotz R, Ortiz V, Nguyen K, Ryon KA, Damle N, Houerbi N, [...] Mason CE
Nat Commun, 15(1):4954, 11 Jun 2024
Cited by: 15 articles | PMID: 38862516
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The Space Omics and Medical Atlas (SOMA) and international astronaut biobank.
Overbey EG, Kim J, Tierney BT, Park J, Houerbi N, Lucaci AG, Garcia Medina S, Damle N, Najjar D, Grigorev K, Afshin EE, Ryon KA, Sienkiewicz K, Patras L, Klotz R, Ortiz V, MacKay M, Schweickart A, Chin CR, [...] Mason CE
Nature, 632(8027):1145-1154, 11 Jun 2024
Cited by: 12 articles | PMID: 38862028 | PMCID: PMC11357981
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ARID1A orchestrates SWI/SNF-mediated sequential binding of transcription factors with ARID1A loss driving pre-memory B cell fate and lymphomagenesis.
Barisic D, Chin CR, Meydan C, Teater M, Tsialta I, Mlynarczyk C, Chadburn A, Wang X, Sarkozy M, Xia M, Carson SE, Raggiri S, Debek S, Pelzer B, Durmaz C, Deng Q, Lakra P, Rivas M, Steidl C, [...] Melnick A
Cancer Cell, 42(4):720-722, 01 Apr 2024
Cited by: 1 article | PMID: 38593783 | PMCID: PMC11421838
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Loss of CREBBP and KMT2D cooperate to accelerate lymphomagenesis and shape the lymphoma immune microenvironment.
Li J, Chin CR, Ying HY, Meydan C, Teater MR, Xia M, Farinha P, Takata K, Chu CS, Jiang Y, Eagles J, Passerini V, Tang Z, Rivas MA, Weigert O, Pugh TJ, Chadburn A, Steidl C, Scott DW, [...] Melnick AM
Nat Commun, 15(1):2879, 03 Apr 2024
Cited by: 1 article | PMID: 38570506 | PMCID: PMC10991284
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ARID1A orchestrates SWI/SNF-mediated sequential binding of transcription factors with ARID1A loss driving pre-memory B cell fate and lymphomagenesis.
Barisic D, Chin CR, Meydan C, Teater M, Tsialta I, Mlynarczyk C, Chadburn A, Wang X, Sarkozy M, Xia M, Carson SE, Raggiri S, Debek S, Pelzer B, Durmaz C, Deng Q, Lakra P, Rivas M, Steidl C, [...] Melnick A
Cancer Cell, 42(4):583-604.e11, 07 Mar 2024
Cited by: 11 articles | PMID: 38458187
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ChromaFold predicts the 3D contact map from single-cell chromatin accessibility
Gao VR, Yang R, Das A, Luo R, Luo H, McNally DR, Karagiannidis I, Rivas MA, Wang Z, Barisic D, Karbalayghareh A, Wong W, Zhan YA, Chin CR, Noble W, Bilmes JA, Apostolou E, Kharas MG, Béguelin W, [...] Leslie CS
bioRxiv, 28 Jul 2023
Cited by: 0 articles | PPR: PPR699014
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Cooperative super-enhancer inactivation caused by heterozygous loss of CREBBP and KMT2D skews B cell fate decisions and yields T cell-depleted lymphomas
Li J, Chin CR, Ying H, Meydan C, Teater MR, Xia M, Farinha P, Takata K, Chu C, Rivas MA, Chadburn A, Steidl C, Scott DW, Roeder RG, Mason CE, Béguelin W, Melnick AM
bioRxiv, 13 Feb 2023
Cited by: 0 articles | PPR: PPR616338
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<i>BTG1</i> mutation yields supercompetitive B cells primed for malignant transformation.
Mlynarczyk C, Teater M, Pae J, Chin CR, Wang L, Arulraj T, Barisic D, Papin A, Hoehn KB, Kots E, Ersching J, Bandyopadhyay A, Barin E, Poh HX, Evans CM, Chadburn A, Chen Z, Shen H, Isles HM, [...] Melnick A
Science, 379(6629):eabj7412, 20 Jan 2023
Cited by: 11 articles | PMID: 36656933 | PMCID: PMC10515739
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An Aged/Autoimmune B-cell Program Defines the Early Transformation of Extranodal Lymphomas.
Venturutti L, Rivas MA, Pelzer BW, Flümann R, Hansen J, Karagiannidis I, Xia M, McNally DR, Isshiki Y, Lytle A, Teater M, Chin CR, Meydan C, Knittel G, Ricker E, Mason CE, Ye X, Pan-Hammarström Q, Steidl C, [...] Melnick AM
Cancer Discov, 13(1):216-243, 01 Jan 2023
Cited by: 8 articles | PMID: 36264161 | PMCID: PMC9839622
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Hypoxic memory of tumor intrinsic type I interferon suppression promotes breast cancer metastasis
Iriondo O, Mecenas D, Li Y, Chin CR, Thomas A, Amzaleg Y, Moriarty A, Ortiz V, MacKay M, Dickerson A, Lee G, Harotoonian S, Benayoun BA, Smith A, Mason C, Torres ETR, Klotz R, Yu M
bioRxiv, 13 May 2022
Cited by: 0 articles | PPR: PPR494318
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Author Correction: Fatty acid synthesis is required for breast cancer brain metastasis.
Ferraro GB, Ali A, Luengo A, Kodack DP, Deik A, Abbott KL, Bezwada D, Blanc L, Prideaux B, Jin X, Posada JM, Chen J, Chin CR, Amoozgar Z, Ferreira R, Chen IX, Naxerova K, Ng C, Westermark AM, [...] Vander Heiden MG
Nat Cancer, 2(11):1243, 01 Nov 2021
Cited by: 2 articles | PMID: 35122065
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Cohesin Core Complex Gene Dosage Contributes to Germinal Center Derived Lymphoma Phenotypes and Outcomes.
Rivas MA, Durmaz C, Kloetgen A, Chin CR, Chen Z, Bhinder B, Koren A, Viny AD, Scharer CD, Boss JM, Elemento O, Mason CE, Melnick AM
Front Immunol, 12:688493, 21 Sep 2021
Cited by: 5 articles | PMID: 34621263 | PMCID: PMC8490713
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Measuring kinetics and metastatic propensity of CTCs by blood exchange between mice.
Hamza B, Miller AB, Meier L, Stockslager M, Ng SR, King EM, Lin L, DeGouveia KL, Mulugeta N, Calistri NL, Strouf H, Bray C, Rodriguez F, Freed-Pastor WA, Chin CR, Jaramillo GC, Burger ML, Weinberg RA, Shalek AK, [...] Manalis SR
Nat Commun, 12(1):5680, 28 Sep 2021
Cited by: 15 articles | PMID: 34584084 | PMCID: PMC8479082
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Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.
Gong B, Li D, Kusko R, Novoradovskaya N, Zhang Y, Wang S, Pabón-Peña C, Zhang Z, Lai K, Cai W, LoCoco JS, Lader E, Richmond TA, Mittal VK, Liu LC, Johann DJ, Willey JC, Bushel PR, Yu Y, [...] Xu J
Genome Biol, 22(1):109, 16 Apr 2021
Cited by: 16 articles | PMID: 33863344 | PMCID: PMC8051090
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FATTY ACID SYNTHESIS IS REQUIRED FOR BREAST CANCER BRAIN METASTASIS.
Ferraro GB, Ali A, Luengo A, Kodack DP, Deik A, Abbott KL, Bezwada D, Blanc L, Prideaux B, Jin X, Posada JM, Chen J, Chin CR, Amoozgar Z, Ferreira R, Chen IX, Naxerova K, Ng C, Westermark AM, [...] Vander Heiden MG
Nat Cancer, 2(4):414-428, 01 Apr 2021
Cited by: 140 articles | PMID: 34179825 | PMCID: PMC8223728
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Chemotherapy Induces Senescence-Like Resilient Cells Capable of Initiating AML Recurrence.
Duy C, Li M, Teater M, Meydan C, Garrett-Bakelman FE, Lee TC, Chin CR, Durmaz C, Kawabata KC, Dhimolea E, Mitsiades CS, Doehner H, D'Andrea RJ, Becker MW, Paietta EM, Mason CE, Carroll M, Melnick AM
Cancer Discov, 11(6):1542-1561, 26 Jan 2021
Cited by: 108 articles | PMID: 33500244 | PMCID: PMC8178167
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Multi-omic, Single-Cell, and Biochemical Profiles of Astronauts Guide Pharmacological Strategies for Returning to Gravity.
Gertz ML, Chin CR, Tomoiaga D, MacKay M, Chang C, Butler D, Afshinnekoo E, Bezdan D, Schmidt MA, Mozsary C, Melnick A, Garrett-Bakelman F, Crucian B, Lee SMC, Zwart SR, Smith SM, Meydan C, Mason CE
Cell Rep, 33(10):108429, 25 Nov 2020
Cited by: 38 articles | PMID: 33242408 | PMCID: PMC9444344
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Smc3 dosage regulates B cell transit through germinal centers and restricts their malignant transformation.
Rivas MA, Meydan C, Chin CR, Challman MF, Kim D, Bhinder B, Kloetgen A, Viny AD, Teater MR, McNally DR, Doane AS, Béguelin W, Fernández MTC, Shen H, Wang X, Levine RL, Chen Z, Tsirigos A, Elemento O, [...] Melnick AM
Nat Immunol, 22(2):240-253, 11 Jan 2021
Cited by: 24 articles | PMID: 33432228 | PMCID: PMC7855695
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Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture.
Yusufova N, Kloetgen A, Teater M, Osunsade A, Camarillo JM, Chin CR, Doane AS, Venters BJ, Portillo-Ledesma S, Conway J, Phillip JM, Elemento O, Scott DW, Béguelin W, Licht JD, Kelleher NL, Staudt LM, Skoultchi AI, Keogh MC, [...] Melnick AM
Nature, 589(7841):299-305, 09 Dec 2020
Cited by: 117 articles | PMID: 33299181 | PMCID: PMC7855728
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Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development.
Malkani S, Chin CR, Cekanaviciute E, Mortreux M, Okinula H, Tarbier M, Schreurs AS, Shirazi-Fard Y, Tahimic CGT, Rodriguez DN, Sexton BS, Butler D, Verma A, Bezdan D, Durmaz C, MacKay M, Melnick A, Meydan C, Li S, [...] Beheshti A
Cell Rep, 33(10):108448, 25 Nov 2020
Cited by: 30 articles | PMID: 33242410 | PMCID: PMC8441986
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Measuring kinetics and metastatic propensity of CTCs by blood exchange between mice
Hamza B, Miller AB, Meier L, Stockslager M, King EM, Ng SR, DeGouveia KL, Mulugeta N, Calistri NL, Strouf H, Lin L, Chin CR, Weinberg RA, Shalek AK, Jacks T, Manalis S
bioRxiv, 01 Nov 2020
Cited by: 0 articles | PPR: PPR232952
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