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Search life-sciences literature (45,104,145 articles, preprints and more)

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Validation of the APOBEC3A-mediated RNA Single Base Substitution Signature and Proposal of Novel APOBEC1, APOBEC3B, and APOBEC3G RNA Signatures.
Fixman B, Díaz-Gay M, Qiu C, Margaryan T, Lee B, Chen XS
J Mol Biol, 168854, 05 Nov 2024
Cited by: 0 articles | PMID: 39510348
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Ancestry and somatic profile predict acral melanoma origin and prognosis
Basurto-Lozada P, Vázquez-Cruz ME, Molina-Aguilar C, Jiang A, Deacon DC, Cerrato-Izaguirre D, Simonin-Wilmer I, Arriaga-González FG, Contreras-Ramírez KL, Dawson ET, Wong-Ramirez JRC, Ramos-Galguera JI, Álvarez-Cano A, García-Ortega DY, García-Salinas OI, Hidalgo-Miranda A, Cisneros-Villanueva M, Martínez-Said H, Arends MJ, [...] Robles-Espinoza CD
medRxiv, 24 Sep 2024
Cited by: 0 articles | PPR: PPR915442
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Deep Learning Artificial Intelligence Predicts Homologous Recombination Deficiency and Platinum Response From Histologic Slides.
Bergstrom EN, Abbasi A, Díaz-Gay M, Galland L, Ladoire S, Lippman SM, Alexandrov LB
J Clin Oncol, 42(30):3550-3560, 31 Jul 2024
Cited by: 1 article | PMID: 39083703 | PMCID: PMC11469627
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CTNND1 is involved in germline predisposition to early-onset gastric cancer by affecting cell-to-cell interactions.
Herrera-Pariente C, Bonjoch L, Muñoz J, Fernàndez G, Soares de Lima Y, Mahmood R, Cuatrecasas M, Ocaña T, Lopez-Prades S, Llargués-Sistac G, Domínguez-Rovira X, Llach J, Luzko I, Díaz-Gay M, Lazaro C, Brunet J, Castillo-Manzano C, García-González MA, Lanas A, [...] Moreira L
Gastric Cancer, 27(4):747-759, 25 May 2024
Cited by: 1 article | PMID: 38796558 | PMCID: PMC11193828
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The mutagenic forces shaping the genomic landscape of lung cancer in never smokers
Díaz-Gay M, Zhang T, Hoang PH, Khandekar A, Zhao W, Steele CD, Otlu B, Nandi SP, Vangara R, Bergstrom EN, Kazachkova M, Pich O, Swanton C, Hsiung CA, Chang I, Wong MP, Leung KC, Sang J, McElderry J, [...] Landi MT
medRxiv, 17 May 2024
Cited by: 0 articles | PPR: PPR854722
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Geographic variation of mutagenic exposures in kidney cancer genomes.
Senkin S, Moody S, Díaz-Gay M, Abedi-Ardekani B, Cattiaux T, Ferreiro-Iglesias A, Wang J, Fitzgerald S, Kazachkova M, Vangara R, Le AP, Bergstrom EN, Khandekar A, Otlu B, Cheema S, Latimer C, Thomas E, Atkins JR, Smith-Byrne K, [...] Brennan P
Nature, 629(8013):910-918, 01 May 2024
Cited by: 6 articles | PMID: 38693263 | PMCID: PMC11111402
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APOBEC shapes tumor evolution and age at onset of lung cancer in smokers
Zhang T, Sang J, Hoang PH, Zhao W, Rosenbaum J, Johnson KE, Klimczak LJ, McElderry J, Klein A, Wirth C, Bergstrom EN, Díaz-Gay M, Vangara R, Colon-Matos F, Hutchinson A, Lawrence SM, Cole N, Zhu B, Przytycka TM, [...] Landi MT
bioRxiv, 03 Apr 2024
Cited by: 0 articles | PPR: PPR831530
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The Complexity of Tobacco Smoke-Induced Mutagenesis in Head and Neck Cancer
Torrens L, Moody S, de Carvalho AC, Kazachkova M, Abedi-Ardekani B, Cheema S, Senkin S, Cattiaux T, Cortez Cardoso Penha R, Atkins JR, Gaborieau V, Chopard P, Carreira C, Abbasi A, Bergstrom EN, Vangara R, Wang J, Fitzgerald S, Latimer C, [...] Perdomo S
medRxiv, 17 Apr 2024
Cited by: 0 articles | PPR: PPR838403
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Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment.
Díaz-Gay M, Vangara R, Barnes M, Wang X, Islam SMA, Vermes I, Duke S, Narasimman NB, Yang T, Jiang Z, Moody S, Senkin S, Brennan P, Stratton MR, Alexandrov LB
Bioinformatics, 39(12):btad756, 01 Dec 2023
Cited by: 23 articles | PMID: 38096571 | PMCID: PMC10746860
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Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator.
Khandekar A, Vangara R, Barnes M, Díaz-Gay M, Abbasi A, Bergstrom EN, Steele CD, Pillay N, Alexandrov LB
BMC Genomics, 24(1):469, 21 Aug 2023
Cited by: 7 articles | PMID: 37605126 | PMCID: PMC10440861
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Geographic variation of mutagenic exposures in kidney cancer genomes
Senkin S, Moody S, Díaz-Gay M, Abedi-Ardekani B, Cattiaux T, Ferreiro-Iglesias A, Wang J, Fitzgerald S, Kazachkova M, Vangara R, Le AP, Bergstrom EN, Khandekar A, Otlu B, Cheema S, Latimer C, Thomas E, Atkins JR, Smith-Byrne K, [...] Brennan P
medRxiv, 29 Jun 2023
Cited by: 0 articles | PPR: PPR683557
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Topography of mutational signatures in human cancer.
Otlu B, Díaz-Gay M, Vermes I, Bergstrom EN, Zhivagui M, Barnes M, Alexandrov LB
Cell Rep, 42(8):112930, 04 Aug 2023
Cited by: 11 articles | PMID: 37540596 | PMCID: PMC10507738
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Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment
Díaz-Gay M, Vangara R, Barnes M, Wang X, Islam SMA, Vermes I, Narasimman NB, Yang T, Jiang Z, Moody S, Senkin S, Brennan P, Stratton MR, Alexandrov LB
bioRxiv, 11 Jul 2023
Cited by: 0 articles | PPR: PPR690141
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Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator
Khandekar A, Vangara R, Barnes M, Díaz-Gay M, Abbasi A, Bergstrom EN, Steele CD, Pillay N, Alexandrov LB
bioRxiv, 04 Feb 2023
Cited by: 0 articles | PPR: PPR612750
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Deep learning predicts HRD and platinum response from histology slides in breast and ovarian cancer
Bergstrom EN, Abbasi A, Díaz-Gay M, Galland L, Lippman SM, Ladoire S, Alexandrov LB
medRxiv, 26 Feb 2023
Cited by: 0 articles | PPR: PPR621473
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Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor.
Islam SMA, Díaz-Gay M, Wu Y, Barnes M, Vangara R, Bergstrom EN, He Y, Vella M, Wang J, Teague JW, Clapham P, Moody S, Senkin S, Li YR, Riva L, Zhang T, Gruber AJ, Steele CD, Otlu B, [...] Alexandrov LB
Cell Genom, 2(11):None, 09 Nov 2022
Cited by: 128 articles | PMID: 36388765 | PMCID: PMC9646490
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Unraveling the impact of a germline heterozygous POLD1 frameshift variant in serrated polyposis syndrome.
Bonjoch L, Soares de Lima Y, Díaz-Gay M, Dotti I, Muñoz J, Moreira L, Carballal S, Ocaña T, Cuatrecasas M, Ortiz O, Castells A, Pellisé M, Balaguer F, Salas A, Alexandrov LB, Castellví-Bel S
Front Mol Biosci, 10:1119900, 23 Jan 2023
Cited by: 2 articles | PMID: 36756361 | PMCID: PMC9900627
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Germline mutations in WNK2 could be associated with serrated polyposis syndrome.
Soares de Lima Y, Arnau-Collell C, Muñoz J, Herrera-Pariente C, Moreira L, Ocaña T, Díaz-Gay M, Franch-Expósito S, Cuatrecasas M, Carballal S, Lopez-Novo A, Moreno L, Fernàndez G, Díaz de Bustamante A, Peters S, Sommer AK, Spier I, Te Paske IBAW, van Herwaarden YJ, [...] Castellvi-Bel S
J Med Genet, 60(6):557-567, 21 Oct 2022
Cited by: 2 articles | PMID: 36270769 | PMCID: PMC10313964
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Topography of mutational signatures in human cancer
Otlu B, Díaz-Gay M, Vermes I, Bergstrom EN, Zhivagui M, Barnes M, Alexandrov LB
bioRxiv, 29 May 2022
Cited by: 0 articles | PPR: PPR499552
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Comprehensive Genomic Characterization of Fifteen Early-Onset Lynch-Like Syndrome Colorectal Cancers.
Golubicki M, Díaz-Gay M, Bonjoch L, Franch-Expósito S, Muñoz J, Cuatrecasas M, Ocaña T, Iseas S, Mendez G, Carballido M, Robbio J, Cisterna D, Roca E, Castells A, Balaguer F, Castellví-Bel S, Antelo M
Cancers (Basel), 13(6):1259, 12 Mar 2021
Cited by: 5 articles | PMID: 33809179 | PMCID: PMC7999079
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Germline and Somatic Whole-Exome Sequencing Identifies New Candidate Genes Involved in Familial Predisposition to Serrated Polyposis Syndrome.
Soares de Lima Y, Arnau-Collell C, Díaz-Gay M, Bonjoch L, Franch-Expósito S, Muñoz J, Moreira L, Ocaña T, Cuatrecasas M, Herrera-Pariente C, Carballal S, Moreno L, Díaz de Bustamante A, Castells A, Bujanda L, Cubiella J, Rodríguez-Alcalde D, Balaguer F, Castellví-Bel S
Cancers (Basel), 13(4):929, 23 Feb 2021
Cited by: 10 articles | PMID: 33672345 | PMCID: PMC7927050
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Identification of New Genes Involved in Germline Predisposition to Early-Onset Gastric Cancer.
Herrera-Pariente C, Capó-García R, Díaz-Gay M, Carballal S, Muñoz J, Llach J, Sánchez A, Bonjoch L, Arnau-Collell C, Soares de Lima Y, Golubicki M, Jung G, Lozano JJ, Castells A, Balaguer F, Bujanda L, Castellví-Bel S, Moreira L
Int J Mol Sci, 22(3):1310, 28 Jan 2021
Cited by: 8 articles | PMID: 33525650 | PMCID: PMC7866206
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Unraveling the genomic landscape of colorectal cancer through mutational signatures.
Díaz-Gay M, Alexandrov LB
Adv Cancer Res, 151:385-424, 27 Mar 2021
Cited by: 12 articles | PMID: 34148618
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Germline biallelic Mcm8 variants are associated with early-onset Lynch-like syndrome.
Golubicki M, Bonjoch L, Acuña-Ochoa JG, Díaz-Gay M, Muñoz J, Cuatrecasas M, Ocaña T, Iseas S, Mendez G, Cisterna D, Schubert SA, Nielsen M, van Wezel T, Goldberg Y, Pikarsky E, Robbio J, Roca E, Castells A, Balaguer F, [...] Castellví-Bel S
JCI Insight, 5(18):140698, 17 Sep 2020
Cited by: 18 articles | PMID: 32841224 | PMCID: PMC7526538
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Uncovering novel mutational signatures byde novoextraction with SigProfilerExtractor
Islam SMA, Díaz-Gay M, Wu Y, Barnes M, Vangara R, Bergstrom EN, He Y, Vella M, Wang J, Teague JW, Clapham P, Moody S, Senkin S, Li YR, Riva L, Zhang T, Gruber AJ, Steele CD, Otlu B, [...] Alexandrov LB
bioRxiv, 13 Dec 2020
Cited by: 0 articles | PPR: PPR256776
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1-25 of 37 results

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Search life-sciences literature (45,104,145 articles, preprints and more)

Search results

Validation of the APOBEC3A-mediated RNA Single Base Substitution Signature and Proposal of Novel APOBEC1, APOBEC3B, and APOBEC3G RNA Signatures.

Ancestry and somatic profile predict acral melanoma origin and prognosis

Deep Learning Artificial Intelligence Predicts Homologous Recombination Deficiency and Platinum Response From Histologic Slides.

CTNND1 is involved in germline predisposition to early-onset gastric cancer by affecting cell-to-cell interactions.

The mutagenic forces shaping the genomic landscape of lung cancer in never smokers

Geographic variation of mutagenic exposures in kidney cancer genomes.

APOBEC shapes tumor evolution and age at onset of lung cancer in smokers

The Complexity of Tobacco Smoke-Induced Mutagenesis in Head and Neck Cancer

Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment.

Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator.

Geographic variation of mutagenic exposures in kidney cancer genomes

Topography of mutational signatures in human cancer.

Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment

Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator

Deep learning predicts HRD and platinum response from histology slides in breast and ovarian cancer

Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor.

Unraveling the impact of a germline heterozygous POLD1 frameshift variant in serrated polyposis syndrome.

Germline mutations in WNK2 could be associated with serrated polyposis syndrome.

Topography of mutational signatures in human cancer

Comprehensive Genomic Characterization of Fifteen Early-Onset Lynch-Like Syndrome Colorectal Cancers.

Germline and Somatic Whole-Exome Sequencing Identifies New Candidate Genes Involved in Familial Predisposition to Serrated Polyposis Syndrome.

Identification of New Genes Involved in Germline Predisposition to Early-Onset Gastric Cancer.

Unraveling the genomic landscape of colorectal cancer through mutational signatures.

Germline biallelic Mcm8 variants are associated with early-onset Lynch-like syndrome.

Uncovering novel mutational signatures byde novoextraction with SigProfilerExtractor

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