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Search life-sciences literature (45,105,671 articles, preprints and more)

Suggested authors matching "AUTH:Diaz-Mejia JJ" with an ORCID

J. Javier Diaz-Mejia
Fundacion Lusara
2
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119
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Adversarial learning enables unbiased organism-wide cross-species alignment of single-cell RNA data at scale
Díaz-Mejía JJ, Williams E, Innes B, Focsa O, Mendonca D, Singh S, Nixon A, Schuster R, Buechler MB, Hinz B, Cooper S
bioRxiv, 11 Aug 2024
Cited by: 0 articles | PPR: PPR893787
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Immunophenotypic correlates of sustained MRD negativity in patients with multiple myeloma.
Coffey DG, Maura F, Gonzalez-Kozlova E, Diaz-Mejia JJ, Luo P, Zhang Y, Xu Y, Warren EH, Dawson T, Lee B, Xie H, Smith E, Ciardiello A, Cho HJ, Rahman A, Kim-Schulze S, Diamond B, Lesokhin A, Kazandjian D, [...] Landgren O
Nat Commun, 14(1):5335, 02 Sep 2023
Cited by: 10 articles | PMID: 37660077 | PMCID: PMC10475030
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Evaluation of single-cell RNAseq labelling algorithms using cancer datasets.
Christensen E, Luo P, Turinsky A, Husić M, Mahalanabis A, Naidas A, Diaz-Mejia JJ, Brudno M, Pugh T, Ramani A, Shooshtari P
Brief Bioinform, 24(1):bbac561, 01 Jan 2023
Cited by: 3 articles | PMID: 36585784 | PMCID: PMC9851326
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Author Correction: Failure of human rhombic lip differentiation underlies medulloblastoma formation.
Hendrikse LD, Haldipur P, Saulnier O, Millman J, Sjoboen AH, Erickson AW, Ong W, Gordon V, Coudière-Morrison L, Mercier AL, Shokouhian M, Suárez RA, Ly M, Borlase S, Scott DS, Vladoiu MC, Farooq H, Sirbu O, Nakashima T, [...] Taylor MD
Nature, 612(7940):E12, 01 Dec 2022
Cited by: 2 articles | PMID: 36446943 | PMCID: PMC10729707
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Failure of human rhombic lip differentiation underlies medulloblastoma formation.
Hendrikse LD, Haldipur P, Saulnier O, Millman J, Sjoboen AH, Erickson AW, Ong W, Gordon V, Coudière-Morrison L, Mercier AL, Shokouhian M, Suárez RA, Ly M, Borlase S, Scott DS, Vladoiu MC, Farooq H, Sirbu O, Nakashima T, [...] Taylor MD
Nature, 609(7929):1021-1028, 21 Sep 2022
Cited by: 45 articles | PMID: 36131014 | PMCID: PMC10026724
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scMARK an ‘MNIST’ like benchmark to evaluate and optimize models for unifying scRNA data
Swechha, Mendonca D, Focsa O, Díaz-Mejía JJ, Cooper S
bioRxiv, 10 Dec 2021
Cited by: 0 articles | PPR: PPR430633
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Antitumor immune effects of preoperative sitravatinib and nivolumab in oral cavity cancer: SNOW window-of-opportunity study.
Oliva M, Chepeha D, Araujo DV, Diaz-Mejia JJ, Olson P, Prawira A, Spreafico A, Bratman SV, Shek T, de Almeida J, R Hansen A, Hope A, Goldstein D, Weinreb I, Smith S, Perez-Ordoñez B, Irish J, Torti D, Bruce JP, [...] Siu L
J Immunother Cancer, 9(10):e003476, 01 Oct 2021
Cited by: 23 articles | PMID: 34599023 | PMCID: PMC8488751
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A comparison of data integration methods for single-cell RNA sequencing of cancer samples
Richards LM, Riverin M, Mohanraj S, Ayyadhury S, Croucher DC, Díaz-Mejía JJ, Coutinho FJ, Dirks PB, Pugh TJ
bioRxiv, 06 Aug 2021
Cited by: 0 articles | PPR: PPR379499
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scNetViz: from single cells to networks using Cytoscape
Choudhary K, Meng EC, Diaz-Mejia JJ, Bader GD, Pico AR, Morris JH
F1000Res, 07 Jun 2021
Cited by: 0 articles | PPR: PPR353417
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scNetViz: from single cells to networks using Cytoscape.
Choudhary K, Meng EC, Diaz-Mejia JJ, Bader GD, Pico AR, Morris JH
F1000Res, 10:ISCB Comm J-448, 07 Jun 2021
Cited by: 1 article | PMID: 34912541 | PMCID: PMC8593621
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CReSCENT: CanceR Single Cell ExpressioN Toolkit.
Mohanraj S, Díaz-Mejía JJ, Pham MD, Elrick H, Husić M, Rashid S, Luo P, Bal P, Lu K, Patel S, Mahalanabis A, Naidas A, Christensen E, Croucher D, Richards LM, Shooshtari P, Brudno M, Ramani AK, Pugh TJ
Nucleic Acids Res, 48(w1):W372-W379, 01 Jul 2020
Cited by: 13 articles | PMID: 32479601 | PMCID: PMC7319570
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CReSCENT: CanceR Single Cell ExpressioN Toolkit
Mohanraj S, Díaz-Mejía JJ, Pham MD, Elrick H, Husić M, Rashid S, Luo P, Bal P, Lu K, Patel S, Mahalanabis A, Naidas A, Christensen E, Croucher D, Richards LM, Shooshtari P, Brudno M, Ramani AK, Pugh TJ
bioRxiv, 29 Mar 2020
Cited by: 0 articles | PPR: PPR130696
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Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data
Diaz-Mejia JJ, Meng EC, Pico AR, MacParland SA, Ketela T, Pugh TJ, Bader GD, Morris JH
F1000Res, 14 Oct 2019
Cited by: 0 articles | PPR: PPR97946
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Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data.
Diaz-Mejia JJ, Meng EC, Pico AR, MacParland SA, Ketela T, Pugh TJ, Bader GD, Morris JH
F1000Res, 8:ISCB Comm J-296, 15 Mar 2019
Cited by: 43 articles | PMID: 31508207 | PMCID: PMC6720041
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Evaluation of methods to assign cell type labels to cell clusters from single-cell RNAsequencing data
Díaz-Mejía JJ, Meng EC, Pico AR, MacParland SA, Ketela T, Pugh TJ, Bader GD, Morris JH
bioRxiv, 28 Feb 2019
Cited by: 0 articles | PPR: PPR71864
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Mapping DNA damage-dependent genetic interactions in yeast via party mating and barcode fusion genetics.
Díaz-Mejía JJ, Celaj A, Mellor JC, Coté A, Balint A, Ho B, Bansal P, Shaeri F, Gebbia M, Weile J, Verby M, Karkhanina A, Zhang Y, Wong C, Rich J, Prendergast D, Gupta G, Öztürk S, Durocher D, [...] Roth FP
Mol Syst Biol, 14(5):e7985, 28 May 2018
Cited by: 18 articles | PMID: 29807908 | PMCID: PMC5974512
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Mapping DNA damage-dependent genetic interactions in yeast via party mating and barcode fusion genetics
Díaz-Mejía JJ, Celaj A, Mellor JC, Coté A, Balint A, Ho B, Bansal P, Shaeri F, Gebbia M, Weile J, Verby M, Karkhanina A, Zhang Y, Wong C, Rich J, Prendergast D, Gupta G, Öztürk S, Durocher D, [...] Roth FP
bioRxiv, 31 Aug 2017
Cited by: 0 articles | PPR: PPR13576
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The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence.
Hansen AM, Chaerkady R, Sharma J, Díaz-Mejía JJ, Tyagi N, Renuse S, Jacob HK, Pinto SM, Sahasrabuddhe NA, Kim MS, Delanghe B, Srinivasan N, Emili A, Kaper JB, Pandey A
PLoS Pathog, 9(6):e1003403, 13 Jun 2013
Cited by: 50 articles | PMID: 23785281 | PMCID: PMC3681748
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Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways.
Babu M, Díaz-Mejía JJ, Vlasblom J, Gagarinova A, Phanse S, Graham C, Yousif F, Ding H, Xiong X, Nazarians-Armavil A, Alamgir M, Ali M, Pogoutse O, Pe'er A, Arnold R, Michaut M, Parkinson J, Golshani A, Whitfield C, [...] Emili A
PLoS Genet, 7(11):e1002377, 17 Nov 2011
Cited by: 68 articles | PMID: 22125496 | PMCID: PMC3219608
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Network-based function prediction and interactomics: the case for metabolic enzymes.
Janga SC, Díaz-Mejía JJ, Moreno-Hagelsieb G
Metab Eng, 13(1):1-10, 21 Jul 2010
Cited by: 26 articles | PMID: 20654726
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Characterization of the NifA-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris.
Salazar E, Díaz-Mejía JJ, Moreno-Hagelsieb G, Martínez-Batallar G, Mora Y, Mora J, Encarnación S
Appl Environ Microbiol, 76(13):4510-4520, 07 May 2010
Cited by: 40 articles | PMID: 20453139 | PMCID: PMC2897426
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Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes.
Babu M, Musso G, Díaz-Mejía JJ, Butland G, Greenblatt JF, Emili A
Mol Biosyst, 5(12):1439-1455, 31 Jul 2009
Cited by: 13 articles | PMID: 19763343
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Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome
Díaz-Mejía JJ, Babu M, Emili A
FEMS microbiology reviews., 33(1):66-97, 01 Jan 2009
Cited by: 0 articles | AGR: IND44136084
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Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome.
Díaz-Mejía JJ, Babu M, Emili A
FEMS Microbiol Rev, 33(1):66-97, 27 Nov 2008
Cited by: 36 articles | PMID: 19054114 | PMCID: PMC2704936
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Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins.
Hu P, Janga SC, Babu M, Díaz-Mejía JJ, Butland G, Yang W, Pogoutse O, Guo X, Phanse S, Wong P, Chandran S, Christopoulos C, Nazarians-Armavil A, Nasseri NK, Musso G, Ali M, Nazemof N, Eroukova V, Golshani A, [...] Emili A
PLoS Biol, 7(4):e96, 01 Apr 2009
Cited by: 209 articles | PMID: 19402753 | PMCID: PMC2672614
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