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Search life-sciences literature (45,100,050 articles, preprints and more)

Suggested authors matching "AUTH:Ergen C" with an ORCID

Can Ergen
University Hospital Hamburg
8
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781
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VI-VS: calibrated identification of feature dependencies in single-cell multiomics.
Boyeau P, Bates S, Ergen C, Jordan MI, Yosef N
Genome Biol, 25(1):294, 15 Nov 2024
Cited by: 0 articles | PMID: 39548591
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Human γδ T cells in diverse tissues exhibit site-specific maturation dynamics across the life span.
Gray JI, Caron DP, Wells SB, Guyer R, Szabo P, Rainbow D, Ergen C, Rybkina K, Bradley MC, Matsumoto R, Pethe K, Kubota M, Teichmann S, Jones J, Yosef N, Atkinson M, Brusko M, Brusko TM, Connors TJ, [...] Farber DL
Sci Immunol, 9(96):eadn3954, 07 Jun 2024
Cited by: 0 articles | PMID: 38848342
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Defining and benchmarking open problems in single-cell analysis
Luecken M, Gigante S, Burkhardt D, Cannoodt R, Strobl D, Markov N, Zappia L, Palla G, Lewis W, Dimitrov D, Vinyard M, Magruder D, Andersson A, Dann E, Qin Q, Otto D, Klein M, Botvinnik O, Deconinck L, [...] Krishnaswamy S
Research Square, 04 Apr 2024
Cited by: 0 articles | PPR: PPR832943
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Scvi-hub: an actionable repository for model-driven single cell analysis
Ergen C, Pour Amiri VV, Kim M, Streets A, Gayoso A, Yosef N
bioRxiv, 04 Mar 2024
Cited by: 0 articles | PPR: PPR813730
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VI-VS: calibrated identification of feature dependencies in single-cell multiomics
Boyeau P, Bates S, Ergen C, Jordan M, Yosef N
Genome Biol, 25(1), 01 Jan 2024
Cited by: 0 articles | PMCID: PMC11566124
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This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
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Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age
Wells SB, Rainbow DB, Mark M, Szabo PA, Ergen C, Maceiras AR, Caron DP, Rahmani E, Benuck E, Amiri VVP, Chen D, Wagner A, Howlett SK, Jarvis LB, Ellis KL, Kubota M, Matsumoto R, Mahbubani K, Saeb-Parsy K, [...] Yosef N
bioRxiv, 03 Jan 2024
Cited by: 0 articles | PPR: PPR782746
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Tr1 Cells Emerge and Suppress Effector Th17 Cells in Glomerulonephritis.
Soukou-Wargalla S, Kilian C, Velasquez LN, Machicote A, Letz P, Tran HB, Domanig S, Bertram F, Stumme F, Bedke T, Giannou A, Kempski J, Sabihi M, Song N, Paust HJ, Borchers A, Garcia Perez L, Pelczar P, Liu B, [...] Huber S
J Immunol, 211(11):1669-1679, 01 Dec 2023
Cited by: 1 article | PMID: 37850963 | PMCID: PMC10656435
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Calibrated Identification of Feature Dependencies in Single-cell Multiomics
Boyeau P, Bates S, Ergen C, Jordan MI, Yosef N
bioRxiv, 05 Nov 2023
Cited by: 0 articles | PPR: PPR753449
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DISCERN: deep single-cell expression reconstruction for improved cell clustering and cell subtype and state detection.
Hausmann F, Ergen C, Khatri R, Marouf M, Hänzelmann S, Gagliani N, Huber S, Machart P, Bonn S
Genome Biol, 24(1):212, 20 Sep 2023
Cited by: 4 articles | PMID: 37730638 | PMCID: PMC10510283
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Consensus prediction of cell type labels with popV
Ergen C, Xing G, Xu C, Jayasuriya M, McGeever E, Pisco AO, Streets A, Yosef N
bioRxiv, 21 Aug 2023
Cited by: 0 articles | PPR: PPR705344
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Single-cell multiomic analysis of thymocyte development reveals drivers of CD4⁺ T cell and CD8⁺ T cell lineage commitment.
Steier Z, Aylard DA, McIntyre LL, Baldwin I, Kim EJY, Lutes LK, Ergen C, Huang TS, Robey EA, Yosef N, Streets A
Nat Immunol, 24(9):1579-1590, 14 Aug 2023
Cited by: 13 articles | PMID: 37580604 | PMCID: PMC10457207
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Emergence and suppressive function of Tr1 cells in glomerulonephritis
Soukou-Wargalla S, Kilian C, Velasquez L, Machicote A, Bertram F, Stumme F, Bedke T, Giannou A, Kempski J, Sabihi M, Song N, Paust H, Borchers A, Perez LG, Pelczar P, Liu B, Ergen C, Steglich B, Muscate F, [...] Huber S
bioRxiv, 07 Feb 2023
Cited by: 0 articles | PPR: PPR614154
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Deep generative modeling of sample-level heterogeneity in single-cell genomics
Boyeau P, Hong J, Gayoso A, Kim M, McFaline-Figueroa JL, Jordan MI, Azizi E, Ergen C, Yosef N
bioRxiv, 06 Oct 2022
Cited by: 0 articles | PPR: PPR555046
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DestVI identifies continuums of cell types in spatial transcriptomics data.
Lopez R, Li B, Keren-Shaul H, Boyeau P, Kedmi M, Pilzer D, Jelinski A, Yofe I, David E, Wagner A, Ergen C, Addadi Y, Golani O, Ronchese F, Jordan MI, Amit I, Yosef N
Nat Biotechnol, 40(9):1360-1369, 21 Apr 2022
Cited by: 64 articles | PMID: 35449415 | PMCID: PMC9756396
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Single-cell multi-omic analysis of thymocyte development reveals drivers of CD4/CD8 lineage commitment
Steier Z, Aylard DA, McIntyre LL, Baldwin I, Yoon Kim EJ, Lutes LK, Ergen C, Ergen C, Huang T, Robey EA, Yosef N, Streets A
bioRxiv, 13 Jul 2021
Cited by: 0 articles | PPR: PPR369798
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Liver fibrosis affects the targeting properties of drug delivery systems to macrophage subsets in vivo.
Ergen C, Niemietz PM, Heymann F, Baues M, Gremse F, Pola R, van Bloois L, Storm G, Kiessling F, Trautwein C, Luedde T, Lammers T, Tacke F
Biomaterials, 206:49-60, 22 Mar 2019
Cited by: 11 articles | PMID: 30925288
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Molecular and functional heterogeneity of IL-10-producing CD4⁺ T cells.
Brockmann L, Soukou S, Steglich B, Czarnewski P, Zhao L, Wende S, Bedke T, Ergen C, Manthey C, Agalioti T, Geffken M, Seiz O, Parigi SM, Sorini C, Geginat J, Fujio K, Jacobs T, Roesch T, Izbicki JR, [...] Huber S
Nat Commun, 9(1):5457, 21 Dec 2018
Cited by: 66 articles | PMID: 30575716 | PMCID: PMC6303294
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Transjugular Intrahepatic Portosystemic Shunt: A Possible Risk Factor for Direct-Acting Antiviral Treatment Failure in Patients With Hepatitis C?
Piecha F, Gänßler JM, Jordan S, Ergen C, Ittrich H, Kluwe J, Pischke S, Lohse AW, Schulze Zur Wiesch J
Hepatol Commun, 3(5):614-619, 18 Mar 2019
Cited by: 3 articles | PMID: 31061950 | PMCID: PMC6492468
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The CCR2⁺ Macrophage Subset Promotes Pathogenic Angiogenesis for Tumor Vascularization in Fibrotic Livers.
Bartneck M, Schrammen PL, Möckel D, Govaere O, Liepelt A, Krenkel O, Ergen C, McCain MV, Eulberg D, Luedde T, Trautwein C, Kiessling F, Reeves H, Lammers T, Tacke F
Cell Mol Gastroenterol Hepatol, 7(2):371-390, 18 Oct 2018
Cited by: 59 articles | PMID: 30704985 | PMCID: PMC6357791
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Targeting and Modulation of Liver Myeloid Immune Cells by Hard-Shell Microbubbles.
Warzecha KT, Bartneck M, Möckel D, Appold L, Ergen C, Al Rawashdeh W, Gremse F, Niemietz PM, Jahnen-Dechent W, Trautwein C, Kiessling F, Lammers T, Tacke F
Adv Biosyst, 2(5):1800002, 01 May 2018
Cited by: 3 articles | PMID: 29876517 | PMCID: PMC5985946
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Targeting distinct myeloid cell populations in vivo using polymers, liposomes and microbubbles.
Ergen C, Heymann F, Al Rawashdeh W, Gremse F, Bartneck M, Panzer U, Pola R, Pechar M, Storm G, Mohr N, Barz M, Zentel R, Kiessling F, Trautwein C, Lammers T, Tacke F
Biomaterials, 114:106-120, 09 Nov 2016
Cited by: 34 articles | PMID: 27855336
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Chemokine (C-C motif) receptor 2-positive monocytes aggravate the early phase of acetaminophen-induced acute liver injury.
Mossanen JC, Krenkel O, Ergen C, Govaere O, Liepelt A, Puengel T, Heymann F, Kalthoff S, Lefebvre E, Eulberg D, Luedde T, Marx G, Strassburg CP, Roskams T, Trautwein C, Tacke F
Hepatology, 64(5):1667-1682, 22 Jul 2016
Cited by: 171 articles | PMID: 27302828
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M-CSF and GM-CSF Receptor Signaling Differentially Regulate Monocyte Maturation and Macrophage Polarization in the Tumor Microenvironment.
Van Overmeire E, Stijlemans B, Heymann F, Keirsse J, Morias Y, Elkrim Y, Brys L, Abels C, Lahmar Q, Ergen C, Vereecke L, Tacke F, De Baetselier P, Van Ginderachter JA, Laoui D
Cancer Res, 76(1):35-42, 16 Nov 2015
Cited by: 141 articles | PMID: 26573801
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Long term intravital multiphoton microscopy imaging of immune cells in healthy and diseased liver using CXCR6.Gfp reporter mice.
Heymann F, Niemietz PM, Peusquens J, Ergen C, Kohlhepp M, Mossanen JC, Schneider C, Vogt M, Tolba RH, Trautwein C, Martin C, Tacke F
J Vis Exp, (97), 24 Mar 2015
Cited by: 12 articles | PMID: 25866988 | PMCID: PMC4401387
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Liver inflammation abrogates immunological tolerance induced by Kupffer cells.
Heymann F, Peusquens J, Ludwig-Portugall I, Kohlhepp M, Ergen C, Niemietz P, Martin C, van Rooijen N, Ochando JC, Randolph GJ, Luedde T, Ginhoux F, Kurts C, Trautwein C, Tacke F
Hepatology, 62(1):279-291, 22 Apr 2015
Cited by: 210 articles | PMID: 25810240
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