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Search life-sciences literature (45,103,589 articles, preprints and more)

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Phylogenomics and the rise of the angiosperms.
Zuntini AR, Carruthers T, Maurin O, Bailey PC, Leempoel K, Brewer GE, Epitawalage N, Françoso E, Gallego-Paramo B, McGinnie C, Negrão R, Roy SR, Simpson L, Toledo Romero E, Barber VMA, Botigué L, Clarkson JJ, Cowan RS, Dodsworth S, [...] Baker WJ
Nature, 629(8013):843-850, 24 Apr 2024
Cited by: 11 articles | PMID: 38658746 | PMCID: PMC11111409
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Physical infrastructure and global capacity are both needed to fight biodiversity loss.
Kersey PJ, Antonelli A
Nat Plants, 9(12):1940, 01 Dec 2023
Cited by: 0 articles | PMID: 38040836
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Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors.
Campbell LI, Nwezeobi J, van Brunschot SL, Kaweesi T, Seal SE, Swamy RAR, Namuddu A, Maslen GL, Mugerwa H, Armean IM, Haggerty L, Martin FJ, Malka O, Santos-Garcia D, Juravel K, Morin S, Stephens ME, Muhindira PV, Kersey PJ, [...] Colvin J
BMC Genomics, 24(1):408, 19 Jul 2023
Cited by: 3 articles | PMID: 37468834
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Comparative analysis of repeat content in plant genomes, large and small.
Argentin J, Bolser D, Kersey PJ, Flicek P
Front Plant Sci, 14:1103035, 14 Jul 2023
Cited by: 1 article | PMID: 37521909 | PMCID: PMC10376685
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Data management challenges for artificial intelligence in plant and agricultural research
Williamson HF, Brettschneider J, Caccamo M, Davey RP, Goble C, Kersey PJ, May S, Morris RJ, Ostler R, Pridmore T, Rawlings C, Studholme D, Tsaftaris SA, Leonelli S
F1000Res, 17 Jan 2023
Cited by: 0 articles | PPR: PPR598508
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Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR.
Beier S, Fiebig A, Pommier C, Liyanage I, Lange M, Kersey PJ, Weise S, Finkers R, Koylass B, Cezard T, Courtot M, Contreras-Moreira B, Naamati G, Dyer S, Scholz U
F1000Res, 11:ELIXIR-231, 24 Feb 2022
Cited by: 2 articles | PMID: 35811804 | PMCID: PMC9218589
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Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR
Beier S, Fiebig A, Pommier C, Liyanage I, Lange M, Kersey PJ, Weise S, Finkers R, Koylass B, Cezard T, Courtot M, Contreras-Moreira B, Naamati G, Dyer S, Scholz U
F1000Res, 19 May 2022
Cited by: 0 articles | PPR: PPR494512
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Standards recommendations for the Earth BioGenome Project.
Lawniczak MKN, Durbin R, Flicek P, Lindblad-Toh K, Wei X, Archibald JM, Baker WJ, Belov K, Blaxter ML, Marques Bonet T, Childers AK, Coddington JA, Crandall KA, Crawford AJ, Davey RP, Di Palma F, Fang Q, Haerty W, Hall N, [...] Richards S
Proc Natl Acad Sci U S A, 119(4):e2115639118, 01 Jan 2022
Cited by: 29 articles | PMID: 35042802 | PMCID: PMC8795494
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A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life.
Baker WJ, Bailey P, Barber V, Barker A, Bellot S, Bishop D, Botigué LR, Brewer G, Carruthers T, Clarkson JJ, Cook J, Cowan RS, Dodsworth S, Epitawalage N, Françoso E, Gallego B, Johnson MG, Kim JT, Leempoel K, [...] Forest F
Syst Biol, 71(2):301-319, 01 Feb 2022
Cited by: 50 articles | PMID: 33983440 | PMCID: PMC8830076
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Green plant genomes: What we know in an era of rapidly expanding opportunities.
Kress WJ, Soltis DE, Kersey PJ, Wegrzyn JL, Leebens-Mack JH, Gostel MR, Liu X, Soltis PS
Proc Natl Acad Sci U S A, 119(4):e2115640118, 01 Jan 2022
Cited by: 44 articles | PMID: 35042803 | PMCID: PMC8795535
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The Earth BioGenome Project 2020: Starting the clock.
Lewin HA, Richards S, Lieberman Aiden E, Allende ML, Archibald JM, Bálint M, Barker KB, Baumgartner B, Belov K, Bertorelle G, Blaxter ML, Cai J, Caperello ND, Carlson K, Castilla-Rubio JC, Chaw SM, Chen L, Childers AK, Coddington JA, [...] Zhang G
Proc Natl Acad Sci U S A, 119(4):e2115635118, 01 Jan 2022
Cited by: 91 articles | PMID: 35042800 | PMCID: PMC8795548
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Data management challenges for artificial intelligence in plant and agricultural research.
Williamson HF, Brettschneider J, Caccamo M, Davey RP, Goble C, Kersey PJ, May S, Morris RJ, Ostler R, Pridmore T, Rawlings C, Studholme D, Tsaftaris SA, Leonelli S
F1000Res, 10:324, 27 Apr 2021
Cited by: 4 articles | PMID: 36873457 | PMCID: PMC9975417
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A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life
Baker WJ, Bailey P, Barber V, Barker A, Bellot S, Bishop D, Botigué LR, Brewer G, Carruthers T, Clarkson JJ, Cook J, Cowan RS, Dodsworth S, Epitawalage N, Françoso E, Gallego B, Johnson MG, Kim JT, Leempoel K, [...] Forest F
bioRxiv, 22 Feb 2021
Cited by: 0 articles | PPR: PPR287235
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Gramene 2021: harnessing the power of comparative genomics and pathways for plant research.
Tello-Ruiz MK, Naithani S, Gupta P, Olson A, Wei S, Preece J, Jiao Y, Wang B, Chougule K, Garg P, Elser J, Kumari S, Kumar V, Contreras-Moreira B, Naamati G, George N, Cook J, Bolser D, D'Eustachio P, [...] Ware D
Nucleic Acids Res, 49(d1):D1452-D1463, 01 Jan 2021
Cited by: 52 articles | PMID: 33170273 | PMCID: PMC7779000
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Mobilizing Crop Biodiversity.
McCouch S, Navabi ZK, Abberton M, Anglin NL, Barbieri RL, Baum M, Bett K, Booker H, Brown GL, Bryan GJ, Cattivelli L, Charest D, Eversole K, Freitas M, Ghamkhar K, Grattapaglia D, Henry R, Valadares Inglis MC, Islam T, [...] Rieseberg LH
Mol Plant, 13(10):1341-1344, 21 Aug 2020
Cited by: 27 articles | PMID: 32835887
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Untapped resources for medical research.
Pérez-Escobar OA, Richardson JE, Howes MR, Lucas E, Álvarez de Róman N, Collemare J, Graham IA, Gratzfeld J, Kersey PJ, Leitch IJ, Paton A, Hollingsworth PM, Antonelli A
Science, 369(6505):781-782, 01 Aug 2020
Cited by: 3 articles | PMID: 32792391
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Enabling reusability of plant phenomic datasets with MIAPPE 1.1.
Papoutsoglou EA, Faria D, Arend D, Arnaud E, Athanasiadis IN, Chaves I, Coppens F, Cornut G, Costa BV, Ćwiek-Kupczyńska H, Droesbeke B, Finkers R, Gruden K, Junker A, King GJ, Krajewski P, Lange M, Laporte MA, Michotey C, [...] Pommier C
New Phytol, 227(1):260-273, 25 Apr 2020
Cited by: 55 articles | PMID: 32171029 | PMCID: PMC7317793
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Ensembl Genomes 2020-enabling non-vertebrate genomic research.
Howe KL, Contreras-Moreira B, De Silva N, Maslen G, Akanni W, Allen J, Alvarez-Jarreta J, Barba M, Bolser DM, Cambell L, Carbajo M, Chakiachvili M, Christensen M, Cummins C, Cuzick A, Davis P, Fexova S, Gall A, George N, [...] Flicek P
Nucleic Acids Res, 48(d1):D689-D695, 01 Jan 2020
Cited by: 232 articles | PMID: 31598706 | PMCID: PMC6943047
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COPO: a metadata platform for brokering FAIR data in the life sciences
Etuk A, Shaw F, Gonzalez-Beltran A, Johnson D, Laporte M, Rocca-Serra P, Arnaud E, Devare M, Kersey PJ, Sansone S, Davey RP
bioRxiv, 26 Sep 2019
Cited by: 0 articles | PPR: PPR93888
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Collaborative Annotation Redefines Gene Sets for Crucial Phytopathogens.
Pedro H, Yates AD, Kersey PJ, De Silva NH
Front Microbiol, 10:2477, 07 Nov 2019
Cited by: 7 articles | PMID: 31787936 | PMCID: PMC6854995
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Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms.
Brewer GE, Clarkson JJ, Maurin O, Zuntini AR, Barber V, Bellot S, Biggs N, Cowan RS, Davies NMJ, Dodsworth S, Edwards SL, Eiserhardt WL, Epitawalage N, Frisby S, Grall A, Kersey PJ, Pokorny L, Leitch IJ, Forest F, Baker WJ
Front Plant Sci, 10:1102, 18 Sep 2019
Cited by: 45 articles | PMID: 31620145 | PMCID: PMC6759688
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Plant genome sequences: past, present, future.
Kersey PJ
Curr Opin Plant Biol, 48:1-8, 19 Dec 2018
Cited by: 63 articles | PMID: 30579050
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Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.
Kersey PJ, Allen JE, Allot A, Barba M, Boddu S, Bolt BJ, Carvalho-Silva D, Christensen M, Davis P, Grabmueller C, Kumar N, Liu Z, Maurel T, Moore B, McDowall MD, Maheswari U, Naamati G, Newman V, Ong CK, [...] Yates A
Nucleic Acids Res, 46(d1):D802-D808, 01 Jan 2018
Cited by: 245 articles | PMID: 29092050 | PMCID: PMC5753204
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Using WormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic Data.
Bolt BJ, Rodgers FH, Shafie M, Kersey PJ, Berriman M, Howe KL
Methods Mol Biol, 1757:471-491, 01 Jan 2018
Cited by: 32 articles | PMID: 29761467
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Gramene 2018: unifying comparative genomics and pathway resources for plant research.
Tello-Ruiz MK, Naithani S, Stein JC, Gupta P, Campbell M, Olson A, Wei S, Preece J, Geniza MJ, Jiao Y, Lee YK, Wang B, Mulvaney J, Chougule K, Elser J, Al-Bader N, Kumari S, Thomason J, Kumar V, [...] Ware D
Nucleic Acids Res, 46(d1):D1181-D1189, 01 Jan 2018
Cited by: 71 articles | PMID: 29165610 | PMCID: PMC5753211
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