Europe PMC requires Javascript to function effectively.

Either your web browser doesn't support Javascript or it is currently turned off. In the latter case, please turn on Javascript support in your web browser and reload this page.

Search life-sciences literature (45,100,050 articles, preprints and more)

Suggested authors matching "AUTH:Kolmogorov M" with an ORCID

Mikhail Kolmogorov
University of California San Diego
3
Publications
3,921
Citations
View profile

Search results

1-25 of 47 results

Sort by:

Relevance ^{Relevance: This is determined based on a ranking of criteria including term frequency, rarity of term, recency of article, whether there is a Title or Author field match, etc.}

Times cited

Date

1 2

Successful classification of clinical pediatric leukemia genetic subtypes via structural variant detection using HiFi long-read sequencing
Lansdon LA, Yoo B, Keskus A, Pushel I, Bi C, Ahmad T, Bryant A, Walter A, Gibson M, Rindler M, Li W, Habeebu SM, Cooley LD, Herriges J, Repnikova E, Zhang L, August KJ, Flatt TG, Gamis AS, [...] Farooqi MS
medRxiv, 05 Nov 2024
Cited by: 0 articles | PPR: PPR935980
Add to export list Preprint
Genetic regulation ofTERTsplicing contributes to reduced or elevated cancer risk by altering cellular longevity and replicative potential
Florez-Vargas O, Ho M, Hogshead M, Lee C, Papenberg BW, Forsythe K, Jones K, Luo W, Teshome K, Blauwendraat C, Billingsley KJ, Kolmogorov M, Meredith M, Paten B, Chari R, Zhang C, Schneekloth JS, Machiela MJ, Chanock SJ, [...] Prokunina-Olsson L
medRxiv, 05 Nov 2024
Cited by: 0 articles | PPR: PPR935997
Add to export list Preprint
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation.
Gustafson JA, Gibson SB, Damaraju N, Zalusky MPG, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson ZB, Storz SHR, Ward SA, Sinha M, [...] Miller DE
Genome Res, 30 Oct 2024
Cited by: 2 articles | PMID: 39358015
Add to export list
Strainy: phasing and assembly of strain haplotypes from long-read metagenome sequencing.
Kazantseva E, Donmez A, Frolova M, Pop M, Kolmogorov M
Nat Methods, 21(11):2034-2043, 26 Sep 2024
Cited by: 1 article | PMID: 39327484
Add to export list
Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair
McDaniel JH, Patel V, Olson ND, He H, He Z, Cole KD, Schmitt A, Sikkink K, Sedlazeck FJ, Doddapaneni H, Jhangiani SN, Muzny DM, Gingras M, Mehta H, Paulin LF, Hastie AR, Yu H, Weigman V, Rojas A, [...] Zook JM
bioRxiv, 22 Sep 2024
Cited by: 0 articles | PPR: PPR913417
Add to export list Preprint
Advancing long-read nanopore genome assembly and accurate variant calling for rare disease detection
Negi S, Stenton SL, Berger SI, McNulty B, Violich I, Gardner J, Hillaker T, O’Rourke SM, O’Leary MC, Carbonell E, Austin-Tse C, Lemire G, Serrano J, Mangilog B, VanNoy G, Kolmogorov M, Vilain E, O’Donnell-Luria A, Délot E, [...] Paten B
medRxiv, 22 Aug 2024
Cited by: 0 articles | PPR: PPR899746
Add to export list Preprint
Personalized pangenome references.
Sirén J, Eskandar P, Ungaro MT, Hickey G, Eizenga JM, Novak AM, Chang X, Chang PC, Kolmogorov M, Carroll A, Monlong J, Paten B
Nat Methods, 21(11):2017-2023, 11 Sep 2024
Cited by: 1 article | PMID: 39261641
Add to export list
DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies
Park J, Cook DE, Chang P, Kolesnikov A, Brambrink L, Mier JC, Gardner J, McNulty B, Sacco S, Keskus A, Bryant A, Ahmad T, Shetty J, Zhao Y, Tran B, Narzisi G, Helland A, Yoo B, Pushel I, [...] Shafin K
bioRxiv, 19 Aug 2024
Cited by: 0 articles | PPR: PPR897871
Add to export list Preprint
Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation
Gustafson JA, Gibson SB, Damaraju N, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson Z, Storz SH, Ward SA, Sinha M, [...] Miller DE
medRxiv, 07 Mar 2024
Cited by: 0 articles | PPR: PPR816056
Add to export list Preprint
Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads
Keskus A, Bryant A, Ahmad T, Yoo B, Aganezov S, Goretsky A, Donmez A, Lansdon LA, Rodriguez I, Park J, Liu Y, Cui X, Gardner J, McNulty B, Sacco S, Shetty J, Zhao Y, Tran B, Narzisi G, [...] Kolmogorov M
medRxiv, 26 Mar 2024
Cited by: 0 articles | PPR: PPR827530
Add to export list Preprint
Insights into the mechanisms and structure of breakage-fusion-bridge cycles in cervical cancer using long-read sequencing.
Rodriguez I, Rossi NM, Keskus AG, Xie Y, Ahmad T, Bryant A, Lou H, Paredes JG, Milano R, Rao N, Tulsyan S, Boland JF, Luo W, Liu J, O'Hanlon T, Bess J, Mukhina V, Gaykalova D, Yuki Y, [...] Dean M
Am J Hum Genet, 111(3):544-561, 01 Feb 2024
Cited by: 1 article | PMID: 38307027 | PMCID: PMC10940022
Add to export list Free full text in Europe PMC
Personalized Pangenome References
Sirén J, Eskandar P, Ungaro MT, Hickey G, Eizenga JM, Novak AM, Chang X, Chang P, Kolmogorov M, Carroll A, Monlong J, Paten B
bioRxiv, 14 Dec 2023
Cited by: 0 articles | PPR: PPR773590
Add to export list Preprint
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation.
Kolmogorov M, Billingsley KJ, Mastoras M, Meredith M, Monlong J, Lorig-Roach R, Asri M, Alvarez Jerez P, Malik L, Dewan R, Reed X, Genner RM, Daida K, Behera S, Shafin K, Pesout T, Prabakaran J, Carnevali P, Yang J, [...] Paten B
Nat Methods, 20(10):1483-1492, 14 Sep 2023
Cited by: 41 articles | PMID: 37710018 | PMCID: PMC11222905
Add to export list Free full text in Europe PMC
Insights into the Mechanisms and Structure of Breakage-Fusion-Bridge Cycles in Cervical Cancer using Long-Read Sequencing
Rodriguez I, Rossi NM, Keskus A, Xie Y, Ahmad T, Bryant A, Lou H, Paredes JG, Milano R, Rao N, Tulsyan S, Boland JF, Luo W, Liu J, O’Hanlon T, Bess J, Mukhina V, Gaykalova D, Yuki Y, [...] Dean M
medRxiv, 22 Aug 2023
Cited by: 0 articles | PPR: PPR705248
Add to export list Preprint
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation
Kolmogorov M, Billingsley KJ, Mastoras M, Meredith M, Monlong J, Lorig-Roach R, Asri M, Jerez PA, Malik L, Dewan R, Reed X, Genner RM, Daida K, Behera S, Shafin K, Pesout T, Prabakaran J, Carnevali P, North American Brain Expression Consortium (NABEC), [...] Paten B
bioRxiv, 15 Jan 2023
Cited by: 0 articles | PPR: PPR597038
Add to export list Preprint
Strainy: phasing and assembly of strain haplotypes from long-read metagenome sequencing
Kazantseva E, Donmez A, Frolova M, Pop M, Kolmogorov M
bioRxiv, 03 Feb 2023
Cited by: 0 articles | PPR: PPR612898
Add to export list Preprint
Analyzing rare mutations in metagenomes assembled using long and accurate reads.
Fedarko MW, Kolmogorov M, Pevzner PA
Genome Res, 32(11-12):2119-2133, 23 Nov 2022
Cited by: 2 articles | PMID: 36418060 | PMCID: PMC9808630
Add to export list
This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
Free full text in Europe PMC
Semi-automated assembly of high-quality diploid human reference genomes.
Jarvis ED, Formenti G, Rhie A, Guarracino A, Yang C, Wood J, Tracey A, Thibaud-Nissen F, Vollger MR, Porubsky D, Cheng H, Asri M, Logsdon GA, Carnevali P, Chaisson MJP, Chin CS, Cody S, Collins J, Ebert P, [...] Human Pangenome Reference Consortium
Nature, 611(7936):519-531, 19 Oct 2022
Cited by: 85 articles | PMID: 36261518 | PMCID: PMC9668749
Add to export list
This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
Free full text in Europe PMC
The complete sequence of a human genome.
Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, Antonarakis SE, Borchers M, Bouffard GG, Brooks SY, [...] Phillippy AM
Science, 376(6588):44-53, 31 Mar 2022
Cited by: 1022 articles | PMID: 35357919 | PMCID: PMC9186530
Add to export list
This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
Free full text in Europe PMC
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, [...] McHardy AC
Nat Methods, 19(4):429-440, 08 Apr 2022
Cited by: 116 articles | PMID: 35396482 | PMCID: PMC9007738
Add to export list
This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
Free full text in Europe PMC
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.
Bickhart DM, Kolmogorov M, Tseng E, Portik DM, Korobeynikov A, Tolstoganov I, Uritskiy G, Liachko I, Sullivan ST, Shin SB, Zorea A, Andreu VP, Panke-Buisse K, Medema MH, Mizrahi I, Pevzner PA, Smith TPL
Nat Biotechnol, 40(5):711-719, 03 Jan 2022
Cited by: 76 articles | PMID: 34980911
Add to export list
Automated assembly of high-quality diploid human reference genomes
Jarvis ED, Formenti G, Rhie A, Guarracino A, Yang C, Wood J, Tracey A, Thibaud-Nissen F, Vollger MR, Porubsky D, Cheng H, Asri M, Logsdon GA, Carnevali P, Chaisson MJ, Chin C, Cody S, Collins J, Ebert P, [...] Human Pangenome Reference Consortium
bioRxiv, 06 Mar 2022
Cited by: 0 articles | PPR: PPR464906
Add to export list Preprint
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data.
Antipov D, Rayko M, Kolmogorov M, Pevzner PA
Genome Biol, 23(1):57, 21 Feb 2022
Cited by: 9 articles | PMID: 35189932 | PMCID: PMC8862349
Add to export list
This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
Free full text in Europe PMC
Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
Shafin K, Pesout T, Chang PC, Nattestad M, Kolesnikov A, Goel S, Baid G, Kolmogorov M, Eizenga JM, Miga KH, Carnevali P, Jain M, Carroll A, Paten B
Nat Methods, 18(11):1322-1332, 01 Nov 2021
Cited by: 116 articles | PMID: 34725481 | PMCID: PMC8571015
Add to export list
This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
Free full text in Europe PMC
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads.
Bankevich A, Bzikadze AV, Kolmogorov M, Antipov D, Pevzner PA
Nat Biotechnol, 40(7):1075-1081, 28 Feb 2022
Cited by: 40 articles | PMID: 35228706
Add to export list

1-25 of 47 results

1 2

Search life-sciences literature (45,100,050 articles, preprints and more)

Suggested authors matching "AUTH:Kolmogorov M" with an ORCID Suggested authors have linked their articles in Europe PMC to their ORCID iD. Up to two suggested authors with a matching surname and initial are shown, ordered by the total number of publications they have in Europe PMC.

Search results

Partnerships & funding

Suggested authors matching "AUTH:Kolmogorov M" with an ORCID