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Search life-sciences literature (45,104,145 articles, preprints and more)

Suggested authors matching "AUTH:Krokhin O" with an ORCID

Oleg Krokhin
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108
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Chromatographic properties of deamidated peptides with Asn-Gly sequences in proteomic bottom-up experiments.
Neale Q, Neustaeter H, Spicer V, Krokhin OV
J Chromatogr A, 1738:465513, 09 Nov 2024
Cited by: 0 articles | PMID: 39549499
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Peptide retention time prediction for electrostatic repulsion-hydrophilic interaction chromatography.
Neale Q, Yeung D, Spicer V, Perreault H, Krokhin O
J Chromatogr A, 1736:465414, 02 Oct 2024
Cited by: 0 articles | PMID: 39378622
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Peptide retention time prediction for hydrophilic interaction liquid chromatography at acidic pH in formic-acid based eluents.
Yeung D, Spicer V, Krokhin OV
J Chromatogr A, 1736:465355, 07 Sep 2024
Cited by: 0 articles | PMID: 39260150
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The phage protein paratox is a multifunctional metabolic regulator ofStreptococcus
Muna TH, Rutbeek NR, Horne J, Lao YW, Krokhin OV, Prehna G
bioRxiv, 02 Aug 2024
Cited by: 0 articles | PPR: PPR890495
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Paradigm Shift: Major Role of Ion-Pairing-Dependent Size Exclusion Effects in Bottom-Up Proteomics Reversed-Phase Peptide Separations.
Yeung D, Spicer V, Zahedi RP, Krokhin OV
Anal Chem, 96(23):9721-9728, 29 May 2024
Cited by: 0 articles | PMID: 38807522
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Toward an Ultimate Solution for Peptide Retention Time Prediction: The Effect of Column Temperature on Separation Selectivity.
Villacrés C, Mizero B, Spicer V, Viner R, Saba J, Patel B, Snovida S, Jensen P, Huhmer A, Krokhin OV
J Proteome Res, 23(4):1488-1494, 26 Mar 2024
Cited by: 1 article | PMID: 38530092
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Retention time prediction for post-translationally modified peptides: Ser, Thr, Tyr-phosphorylation.
Battellino T, Yeung D, Neustaeter H, Spicer V, Ogata K, Ishihama Y, Krokhin OV
J Chromatogr A, 1718:464714, 10 Feb 2024
Cited by: 0 articles | PMID: 38359688
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Accelerating Proteomics Using Broad Specificity Proteases.
Jiang X, Yeung D, Liu Y, Spicer V, Afshari H, Lao Y, Lin F, Krokhin O, Zahedi RP
J Proteome Res, 23(4):1360-1369, 08 Mar 2024
Cited by: 1 article | PMID: 38457694
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Cytoplasmic Shotgun Proteomic Points to Key Proteins and Pathways in Temozolomide-Resistant Glioblastoma Multiforme.
Teraiya M, Krokhin O, Chen VC, Perreault H
J Proteome Res, 23(1):465-482, 26 Dec 2023
Cited by: 0 articles | PMID: 38147655
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Compendium of Chromatographic Behavior of Post-translationally and Chemically Modified Peptides in Bottom-Up Proteomic Experiments.
Neale Q, Prefontaine A, Battellino T, Mizero B, Yeung D, Spicer V, Budisa N, Perreault H, Zahedi RP, Krokhin OV
Anal Chem, 95(39):14634-14642, 22 Sep 2023
Cited by: 0 articles | PMID: 37739932
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Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications
Wilburn DB, Shannon AE, Spicer V, Richards AL, Yeung D, Swaney DL, Krokhin OV, Searle BC
bioRxiv, 02 Jun 2023
Cited by: 0 articles | PPR: PPR670026
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Exploring the variable space of shallow machine learning models for reversed-phase retention time prediction.
Yeung D, Spicer V, Zahedi RP, Krokhin O
Comput Struct Biotechnol J, 21:2446-2453, 27 Feb 2023
Cited by: 0 articles | PMID: 37090433 | PMCID: PMC10113922
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Acetic Acid Ion Pairing Additive for Reversed-Phase HPLC Improves Detection Sensitivity in Bottom-up Proteomics Compared to Formic Acid.
Battellino T, Ogata K, Spicer V, Ishihama Y, Krokhin O
J Proteome Res, 22(1):272-278, 08 Dec 2022
Cited by: 4 articles | PMID: 36480176
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Reversed-Phase Liquid Chromatography of Peptides for Bottom-Up Proteomics: A Tutorial.
Lenčo J, Jadeja S, Naplekov DK, Krokhin OV, Khalikova MA, Chocholouš P, Urban J, Broeckhoven K, Nováková L, Švec F
J Proteome Res, 21(12):2846-2892, 10 Nov 2022
Cited by: 8 articles | PMID: 36355445
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Chromatographic behaviour of peptides modified with amine-reacting tags for relative protein quantitation in proteomic applications.
Yeung D, Anderson G, Spicer V, Krokhin OV
J Chromatogr A, 1679:463391, 30 Jul 2022
Cited by: 0 articles | PMID: 35947918
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Retention Time Prediction for TMT-Labeled Peptides in Proteomic LC-MS Experiments.
Mizero B, Villacrés C, Spicer V, Viner R, Saba J, Patel B, Snovida S, Jensen P, Huhmer A, Krokhin OV
J Proteome Res, 21(5):1218-1228, 01 Apr 2022
Cited by: 0 articles | PMID: 35363494
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Proteomic Shifts Reflecting Oxidative Stress and Reduced Capacity for Protein Synthesis, and Alterations to Mitochondrial Membranes in Neurospora crassa Lacking VDAC.
Shuvo SR, Motnenko A, Krokhin OV, Spicer V, Court DA
Microorganisms, 10(2):198, 18 Jan 2022
Cited by: 2 articles | PMID: 35208654 | PMCID: PMC8877502
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This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
Free full text in Europe PMC
Rodent Lung Tissue Sample Preparation and Processing for Shotgun Proteomics.
Piyadasa H, Lao Y, Krokhin O, Mookherjee N
Methods Mol Biol, 2456:53-62, 01 Jan 2022
Cited by: 0 articles | PMID: 35612734
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Peptide retention time prediction for peptides with post-translational modifications: N-terminal (α-amine) and lysine (ε-amine) acetylation.
Mizero B, Yeung D, Spicer V, Krokhin OV
J Chromatogr A, 1657:462584, 30 Sep 2021
Cited by: 1 article | PMID: 34619563
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Sequence-Specific Model for Predicting Peptide Collision Cross Section Values in Proteomic Ion Mobility Spectrometry.
Chang CH, Yeung D, Spicer V, Ogata K, Krokhin O, Ishihama Y
J Proteome Res, 16 Jun 2021
Cited by: 7 articles | PMID: 34133192
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Disrupting Tryptophan in the Central Hydrophobic Region Selectively Mitigates Immunomodulatory Activities of the Innate Defence Regulator Peptide IDR-1002.
Piyadasa H, Hemshekhar M, Osawa N, Lloyd D, Altieri A, Basu S, Krokhin OV, Halayko AJ, Mookherjee N
J Med Chem, 64(10):6696-6705, 11 May 2021
Cited by: 3 articles | PMID: 33974425
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Analysis of the Yarrowia lipolytica proteome reveals subtle variations in expression levels between lipogenic and non-lipogenic conditions.
Sestric R, Spicer V, Krokhin OV, Sparling R, Levin DB
FEMS Yeast Res, 21(2):foab007, 01 Mar 2021
Cited by: 0 articles | PMID: 33571365
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Confident Identification of Citrullination and Carbamylation Assisted by Peptide Retention Time Prediction.
Villacrés C, Spicer V, Krokhin OV
J Proteome Res, 20(3):1571-1581, 01 Feb 2021
Cited by: 5 articles | PMID: 33523662
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Sequence-specific model for predicting peptide collision cross-section values in proteomic ion mobility spectrometry
Chang C, Yeung D, Spicer V, Krokhin O, Ishihama Y
bioRxiv, 15 Sep 2020
Cited by: 0 articles | PPR: PPR214603
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Peptide separation selectivity in proteomics LC-MS experiments: Comparison of formic and mixed formic/heptafluorobutyric acids ion-pairing modifiers.
Gussakovsky D, Anderson G, Spicer V, Krokhin OV
J Sep Sci, 43(20):3830-3839, 09 Sep 2020
Cited by: 1 article | PMID: 32818315
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1-25 of 138 results

1 2 3 Next ...

Search life-sciences literature (45,104,145 articles, preprints and more)

Suggested authors matching "AUTH:Krokhin O" with an ORCID

Search results

Chromatographic properties of deamidated peptides with Asn-Gly sequences in proteomic bottom-up experiments.

Peptide retention time prediction for electrostatic repulsion-hydrophilic interaction chromatography.

Peptide retention time prediction for hydrophilic interaction liquid chromatography at acidic pH in formic-acid based eluents.

The phage protein paratox is a multifunctional metabolic regulator ofStreptococcus

Paradigm Shift: Major Role of Ion-Pairing-Dependent Size Exclusion Effects in Bottom-Up Proteomics Reversed-Phase Peptide Separations.

Toward an Ultimate Solution for Peptide Retention Time Prediction: The Effect of Column Temperature on Separation Selectivity.

Retention time prediction for post-translationally modified peptides: Ser, Thr, Tyr-phosphorylation.

Accelerating Proteomics Using Broad Specificity Proteases.

Cytoplasmic Shotgun Proteomic Points to Key Proteins and Pathways in Temozolomide-Resistant Glioblastoma Multiforme.

Compendium of Chromatographic Behavior of Post-translationally and Chemically Modified Peptides in Bottom-Up Proteomic Experiments.

Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications

Exploring the variable space of shallow machine learning models for reversed-phase retention time prediction.

Acetic Acid Ion Pairing Additive for Reversed-Phase HPLC Improves Detection Sensitivity in Bottom-up Proteomics Compared to Formic Acid.

Reversed-Phase Liquid Chromatography of Peptides for Bottom-Up Proteomics: A Tutorial.

Chromatographic behaviour of peptides modified with amine-reacting tags for relative protein quantitation in proteomic applications.

Retention Time Prediction for TMT-Labeled Peptides in Proteomic LC-MS Experiments.

Proteomic Shifts Reflecting Oxidative Stress and Reduced Capacity for Protein Synthesis, and Alterations to Mitochondrial Membranes in Neurospora crassa Lacking VDAC.

Rodent Lung Tissue Sample Preparation and Processing for Shotgun Proteomics.

Peptide retention time prediction for peptides with post-translational modifications: N-terminal (α-amine) and lysine (ε-amine) acetylation.

Sequence-Specific Model for Predicting Peptide Collision Cross Section Values in Proteomic Ion Mobility Spectrometry.

Disrupting Tryptophan in the Central Hydrophobic Region Selectively Mitigates Immunomodulatory Activities of the Innate Defence Regulator Peptide IDR-1002.

Analysis of the Yarrowia lipolytica proteome reveals subtle variations in expression levels between lipogenic and non-lipogenic conditions.

Confident Identification of Citrullination and Carbamylation Assisted by Peptide Retention Time Prediction.

Sequence-specific model for predicting peptide collision cross-section values in proteomic ion mobility spectrometry

Peptide separation selectivity in proteomics LC-MS experiments: Comparison of formic and mixed formic/heptafluorobutyric acids ion-pairing modifiers.

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Suggested authors matching "AUTH:Krokhin O" with an ORCID