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Search life-sciences literature (45,103,589 articles, preprints and more)

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Transcriptomic and metabolic changes in Trichoderma reesei caused by mutation in xylanase regulator 1 (xyr1).
Sveholm E, Mattila H, Aro N, Valkonen M, Paasela T, Pakula TM
Biotechnol Biofuels Bioprod, 17(1):106, 19 Jul 2024
Cited by: 0 articles | PMID: 39030601 | PMCID: PMC11265206
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Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction.
Castillo S, Castillo S, Barth D, Arvas M, Pakula TM, Pitkänen E, Blomberg P, Seppanen-Laakso T, Nygren H, Sivasiddarthan D, Penttilä M, Oja M
Biotechnol Biofuels, 9:252, 21 Nov 2016
Cited by: 11 articles | PMID: 27895706 | PMCID: PMC5117618
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Genome wide analysis of protein production load in Trichoderma reesei.
Pakula TM, Nygren H, Barth D, Heinonen M, Castillo S, Penttilä M, Arvas M
Biotechnol Biofuels, 9:132, 28 Jun 2016
Cited by: 15 articles | PMID: 27354857 | PMCID: PMC4924338
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Quantitative Site-Specific Phosphoproteomics of Trichoderma reesei Signaling Pathways upon Induction of Hydrolytic Enzyme Production.
Nguyen EV, Imanishi SY, Haapaniemi P, Yadav A, Saloheimo M, Corthals GL, Pakula TM
J Proteome Res, 15(2):457-467, 14 Jan 2016
Cited by: 20 articles | PMID: 26689635
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The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei.
Häkkinen M, Sivasiddarthan D, Aro N, Saloheimo M, Pakula TM
Microb Cell Fact, 14:63, 30 Apr 2015
Cited by: 23 articles | PMID: 25925231 | PMCID: PMC4446002
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Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production.
Häkkinen M, Valkonen MJ, Westerholm-Parvinen A, Aro N, Arvas M, Vitikainen M, Penttilä M, Saloheimo M, Pakula TM
Biotechnol Biofuels, 7(1):14, 28 Jan 2014
Cited by: 127 articles | PMID: 24472375 | PMCID: PMC3922861
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Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates.
Häkkinen M, Arvas M, Oja M, Aro N, Penttilä M, Saloheimo M, Pakula TM
Microb Cell Fact, 11:134, 04 Oct 2012
Cited by: 88 articles | PMID: 23035824 | PMCID: PMC3526510
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The cargo and the transport system: secreted proteins and protein secretion in Trichoderma reesei (Hypocrea jecorina).
Saloheimo M, Pakula TM
Microbiology (Reading), 158(pt 1):46-57, 03 Nov 2011
Cited by: 57 articles | PMID: 22053009
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The effect of specific growth rate on protein synthesis and secretion in the filamentous fungus Trichoderma reesei.
Pakula TM, Salonen K, Uusitalo J, Penttilä M
Microbiology (Reading), 151(pt 1):135-143, 01 Jan 2005
Cited by: 46 articles | PMID: 15632433
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Protein production and induction of the unfolded protein response in Trichoderma reesei strain Rut-C30 and its transformant expressing endoglucanase I with a hydrophobic tag.
Collén A, Saloheimo M, Bailey M, Penttilä M, Pakula TM
Biotechnol Bioeng, 89(3):335-344, 01 Feb 2005
Cited by: 23 articles | PMID: 15619324
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The effects of drugs inhibiting protein secretion in the filamentous fungus Trichoderma reesei. Evidence for down-regulation of genes that encode secreted proteins in the stressed cells.
Pakula TM, Laxell M, Huuskonen A, Uusitalo J, Saloheimo M, Penttilä M
J Biol Chem, 278(45):45011-45020, 26 Aug 2003
Cited by: 91 articles | PMID: 12941955
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Monitoring the kinetics of glycoprotein synthesis and secretion in the filamentous fungus Trichoderma reesei: cellobiohydrolase I (CBHI) as a model protein.
Pakula TM, Uusitalo J, Saloheimo M, Salonen K, Aarts RJ, Penttilä M
Microbiology (Reading), 146 ( Pt 1):223-232, 01 Jan 2000
Cited by: 17 articles | PMID: 10658668
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Genome organization of membrane-containing bacteriophage PRD1.
Bamford JK, Hänninen AL, Pakula TM, Ojala PM, Kalkkinen N, Frilander M, Bamford DH
Virology, 183(2):658-676, 01 Aug 1991
Cited by: 47 articles | PMID: 1853567
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Overproduction, purification, and characterization of DNA-binding protein P19 of bacteriophage PRD1.
Pakula TM, Caldentey J, Gutiérrez C, Olkkonen VM, Salas M, Bamford DH
Gene, 126(1):99-104, 01 Apr 1993
Cited by: 11 articles | PMID: 8472964
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Characterization of a DNA binding protein of bacteriophage PRD1 involved in DNA replication.
Pakula TM, Caldentey J, Serrano M, Gutierrez C, Hermoso JM, Salas M, Bamford DH
Nucleic Acids Res, 18(22):6553-6557, 01 Nov 1990
Cited by: 12 articles | PMID: 2251117 | PMCID: PMC332609
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The organization of the right-end early region of bacteriophage PRD1 genome.
Pakula TM, Savilahti H, Bamford DH
Gene, 85(1):53-58, 01 Dec 1989
Cited by: 9 articles | PMID: 2695404
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Comparison of the amino acid sequence of the lytic enzyme from broad-host-range bacteriophage PRD1 with sequences of other cell-wall-peptidoglycan lytic enzymes.
Pakula TM, Savilahti H, Bamford DH
Eur J Biochem, 180(1):149-152, 01 Mar 1989
Cited by: 14 articles | PMID: 2651121
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1-17 of 17 results

Search life-sciences literature (45,103,589 articles, preprints and more)

Search results

Transcriptomic and metabolic changes in Trichoderma reesei caused by mutation in xylanase regulator 1 (xyr1).

Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction.

Genome wide analysis of protein production load in Trichoderma reesei.

Quantitative Site-Specific Phosphoproteomics of Trichoderma reesei Signaling Pathways upon Induction of Hydrolytic Enzyme Production.

The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei.

Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production.

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates.

The cargo and the transport system: secreted proteins and protein secretion in Trichoderma reesei (Hypocrea jecorina).

The effect of specific growth rate on protein synthesis and secretion in the filamentous fungus Trichoderma reesei.

Protein production and induction of the unfolded protein response in Trichoderma reesei strain Rut-C30 and its transformant expressing endoglucanase I with a hydrophobic tag.

The effects of drugs inhibiting protein secretion in the filamentous fungus Trichoderma reesei. Evidence for down-regulation of genes that encode secreted proteins in the stressed cells.

Monitoring the kinetics of glycoprotein synthesis and secretion in the filamentous fungus Trichoderma reesei: cellobiohydrolase I (CBHI) as a model protein.

Genome organization of membrane-containing bacteriophage PRD1.

Overproduction, purification, and characterization of DNA-binding protein P19 of bacteriophage PRD1.

Characterization of a DNA binding protein of bacteriophage PRD1 involved in DNA replication.

The organization of the right-end early region of bacteriophage PRD1 genome.

Comparison of the amino acid sequence of the lytic enzyme from broad-host-range bacteriophage PRD1 with sequences of other cell-wall-peptidoglycan lytic enzymes.

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