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Search life-sciences literature (45,104,931 articles, preprints and more)

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Modeling lung adenocarcinoma metastases using patient-derived organoids.
Liu Y, Lankadasari M, Rosiene J, Johnson KE, Zhou J, Bapat S, Chow-Tsang LL, Tian H, Mastrogiacomo B, He D, Connolly JG, Lengel HB, Caso R, Dunne EG, Fick CN, Rocco G, Sihag S, Isbell JM, Bott MJ, [...] Jones DR
Cell Rep Med, 5(10):101777, 01 Oct 2024
Cited by: 0 articles | PMID: 39413736 | PMCID: PMC11513837
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Most large structural variants in cancer genomes can be detected without long reads.
Choo ZN, Behr JM, Deshpande A, Hadi K, Yao X, Tian H, Takai K, Zakusilo G, Rosiene J, Da Cruz Paula A, Weigelt B, Setton J, Riaz N, Powell SN, Busam K, Shoushtari AN, Ariyan C, Reis-Filho J, de Lange T, Imieliński M
Nat Genet, 55(12):2139-2148, 09 Nov 2023
Cited by: 8 articles | PMID: 37945902 | PMCID: PMC10703688
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Long-molecule scars of backup DNA repair in BRCA1- and BRCA2-deficient cancers.
Setton J, Hadi K, Choo ZN, Kuchin KS, Tian H, Da Cruz Paula A, Rosiene J, Selenica P, Behr J, Yao X, Deshpande A, Sigouros M, Manohar J, Nauseef JT, Mosquera JM, Elemento O, Weigelt B, Riaz N, Reis-Filho JS, [...] Imieliński M
Nature, 621(7977):129-137, 16 Aug 2023
Cited by: 3 articles | PMID: 37587346 | PMCID: PMC10482687
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Molecular Evolution of Classic Hodgkin Lymphoma Revealed Through Whole-Genome Sequencing of Hodgkin and Reed Sternberg Cells.
Maura F, Ziccheddu B, Xiang JZ, Bhinder B, Rosiene J, Abascal F, Maclachlan KH, Eng KW, Uppal M, He F, Zhang W, Gao Q, Yellapantula VD, Trujillo-Alonso V, Park SI, Oberley MJ, Ruckdeschel E, Lim MS, Wertheim GB, [...] Giulino-Roth L
Blood Cancer Discov, 4(3):208-227, 01 May 2023
Cited by: 11 articles | PMID: 36723991 | PMCID: PMC10150291
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Sex-related characteristics and short-term outcomes of patients undergoing transcatheter tricuspid valve intervention for tricuspid regurgitation.
Scotti A, Coisne A, Taramasso M, Granada JF, Ludwig S, Rodés-Cabau J, Lurz P, Hausleiter J, Fam N, Kodali SK, Rosiene J, Feinberg A, Pozzoli A, Alessandrini H, Biasco L, Brochet E, Denti P, Estévez-Loureiro R, Frerker C, [...] Latib A
Eur Heart J, 44(10):822-832, 01 Mar 2023
Cited by: 5 articles | PMID: 36445158
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Whole-genome characterization of myoepithelial carcinomas of the soft tissue.
Cyrta J, Rosiene J, Bareja R, Kudman S, Al Zoughbi W, Motanagh S, Wilkes DC, Eng K, Zhang T, Sticca E, Mathew S, Rubin MA, Sboner A, Elemento O, Rubin BP, Imielinski M, Mosquera JM
Cold Spring Harb Mol Case Stud, 8(7):a006227, 28 Dec 2022
Cited by: 1 article | PMID: 36577525 | PMCID: PMC9808553
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Genomic signature of Fanconi anaemia DNA repair pathway deficiency in cancer.
Webster ALH, Sanders MA, Patel K, Dietrich R, Noonan RJ, Lach FP, White RR, Goldfarb A, Hadi K, Edwards MM, Donovan FX, Hoogenboezem RM, Jung M, Sridhar S, Wiley TF, Fedrigo O, Tian H, Rosiene J, Heineman T, [...] Smogorzewska A
Nature, 612(7940):495-502, 30 Nov 2022
Cited by: 23 articles | PMID: 36450981 | PMCID: PMC10202100
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System-wide transcriptome damage and tissue identity loss in COVID-19 patients.
Park J, Foox J, Hether T, Danko DC, Warren S, Kim Y, Reeves J, Butler DJ, Mozsary C, Rosiene J, Shaiber A, Afshin EE, MacKay M, Rendeiro AF, Bram Y, Chandar V, Geiger H, Craney A, Velu P, [...] Mason CE
Cell Rep Med, 3(2):100522, 24 Jan 2022
Cited by: 26 articles | PMID: 35233546 | PMCID: PMC8784611
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Loose ends in cancer genome structure
Behr JM, Yao X, Hadi K, Tian H, Deshpande A, Rosiene J, Lange Td, Imieliński M
bioRxiv, 27 May 2021
Cited by: 0 articles | PPR: PPR349245
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Fanconi Anemia Pathway Deficiency Drives Copy Number Variation in Squamous Cell Carcinomas
Webster AL, Sanders MA, Patel K, Dietrich R, Noonan RJ, Lach FP, White RR, Goldfarb A, Hadi K, Edwards MM, Donovan FX, Jung M, Sridhar S, Fedrigo O, Tian H, Rosiene J, Heineman T, Kennedy JA, Bean L, [...] Smogorzewska A
bioRxiv, 16 Aug 2021
Cited by: 0 articles | PPR: PPR383190
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Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.
Butler D, Mozsary C, Meydan C, Foox J, Rosiene J, Shaiber A, Danko D, Afshinnekoo E, MacKay M, Sedlazeck FJ, Ivanov NA, Sierra M, Pohle D, Zietz M, Gisladottir U, Ramlall V, Sholle ET, Schenck EJ, Westover CD, [...] Mason CE
Nat Commun, 12(1):1660, 12 Mar 2021
Cited by: 124 articles | PMID: 33712587 | PMCID: PMC7954844
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Structural variant evolution after telomere crisis.
Dewhurst SM, Yao X, Rosiene J, Tian H, Behr J, Bosco N, Takai KK, de Lange T, Imieliński M
Nat Commun, 12(1):2093, 07 Apr 2021
Cited by: 12 articles | PMID: 33828097 | PMCID: PMC8027843
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Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps
Park J, Foox J, Hether T, Danko D, Warren S, Kim Y, Reeves J, Butler DJ, Mozsary C, Rosiene J, Shaiber A, Afshinnekoo E, MacKay M, Bram Y, Chandar V, Geiger H, Craney A, Velu P, Melnick AM, [...] Mason CE
bioRxiv, 09 Mar 2021
Cited by: 0 articles | PPR: PPR294791
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Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions
Butler DJ, Mozsary C, Meydan C, Danko D, Foox J, Rosiene J, Shaiber A, Afshinnekoo E, MacKay M, Sedlazeck FJ, Ivanov NA, Sierra M, Pohle D, Zietz M, Gisladottir U, Ramlall V, Westover CD, Ryon K, Young B, [...] Mason CE
bioRxiv, 20 Apr 2020
Cited by: 1 article | PPR: PPR152488
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Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs.
Hadi K, Yao X, Behr JM, Deshpande A, Xanthopoulakis C, Tian H, Kudman S, Rosiene J, Darmofal M, DeRose J, Mortensen R, Adney EM, Shaiber A, Gajic Z, Sigouros M, Eng K, Wala JA, Wrzeszczyński KO, Arora K, [...] Imielinski M
Cell, 183(1):197-210.e32, 01 Oct 2020
Cited by: 123 articles | PMID: 33007263 | PMCID: PMC7912537
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Structural variant evolution after telomere crisis
Dewhurst S, Yao X, Rosiene J, Tian H, Behr J, Bosco N, Takai KK, de Lange T, Imielinski M
bioRxiv, 29 Sep 2020
Cited by: 0 articles | PPR: PPR219798
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Novel patterns of complex structural variation revealed across thousands of cancer genome graphs
Hadi K, Yao X, Behr JM, Deshpande A, Xanthopoulakis C, Rosiene J, Darmofal M, Tian H, DeRose J, Mortensen R, Adney EM, Gajic Z, Eng K, Wala JA, Wrzeszczyński KO, Arora K, Shah M, Emde A, Felice V, [...] Imielinski M
bioRxiv, 09 Nov 2019
Cited by: 0 articles | PPR: PPR101594
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Tracking and transforming neocortical progenitors by CRISPR/Cas9 gene targeting and piggyBac transposase lineage labeling.
Chen F, Rosiene J, Che A, Becker A, LoTurco J
Development, 142(20):3601-3611, 23 Sep 2015
Cited by: 46 articles | PMID: 26400094 | PMCID: PMC4631763
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Structure-function relationships in the human visual system using DTI, fMRI and visual field testing: pre- and post-operative assessments in patients with anterior visual pathway compression.
Rosiene J, Liu X, Imielinska C, Ferrera J, Bruce J, Hirsch J, D'Ambrosio A
Stud Health Technol Inform, 119:464-466, 01 Jan 2006
Cited by: 7 articles | PMID: 16404100
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Toward objective quantification of perfusion-weighted computed tomography in subarachnoid hemorrhage: quantification of symmetry and automated delineation of vascular territories.
Imielinska C, Liu X, Rosiene J, Sughrue ME, Komotar RJ, Mocco J, Ransom ER, Lignelli A, Zacharia BE, Connolly ES, D'Ambrosio AL
Acad Radiol, 12(7):874-887, 01 Jul 2005
Cited by: 4 articles | PMID: 16039541
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Dilation based modeling of perfusion datasets.
Rosiene J, Imielinska C, Liu X, Keating S
AMIA Annu Symp Proc, 1098, 01 Jan 2005
Cited by: 0 articles | PMID: 16779385 | PMCID: PMC1560871
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