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Search life-sciences literature (45,104,206 articles, preprints and more)

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SARS-CoV-2 EndoU-ribonuclease regulates RNA recombination and impacts viral fitness
Zhou Y, Ahearn YP, Lokugamage KG, Alvarado RE, Estes LK, Meyers WM, McLeland AM, Morgan AL, Murray JT, Walker DH, Johnson BA, Routh AL, Menachery VD
bioRxiv, 13 Nov 2024
Cited by: 0 articles | PPR: PPR939267
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Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability.
Zhou Y, Routh AL
J Virol, 98(3):e0182023, 08 Feb 2024
Cited by: 0 articles | PMID: 38329331 | PMCID: PMC10949487
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RpoS activates formation ofSalmonellaTyphi biofilms and drives persistence in the gall bladder
Desai SK, Zhou Y, Dilawari R, Routh AL, Popov V, Kenney LJ
bioRxiv, 26 Oct 2023
Cited by: 0 articles | PPR: PPR748692
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Diverse Clinical Manifestations and Challenges of Mucormycosis: Insights From Serial Cases.
Nielsen MC, Cerqueira FM, Kavuri SB, Raymond CM, Muneeb A, Kudlicki AS, Tariq S, Liu M, Routh AL, Qiu S, Ren P
Open Forum Infect Dis, 10(11):ofad527, 24 Oct 2023
Cited by: 0 articles | PMID: 39139204 | PMCID: PMC11320587
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Loss-of-function mutation in Omicron variants reduces spike protein expression and attenuates SARS-CoV-2 infection
Vu MN, Alvarado RE, Morris DR, Lokugamage KG, Zhou Y, Morgan AL, Estes LK, McLeland AM, Schindewolf C, Plante JA, Ahearn YP, Meyers WM, Murray JT, Crocquet-Valdes PA, Weaver SC, Walker DH, Russell WK, Routh AL, Plante KS, Menachery V
bioRxiv, 18 Apr 2023
Cited by: 0 articles | PPR: PPR646440
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ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids.
Sotcheff S, Zhou Y, Yeung J, Sun Y, Johnson JE, Torbett BE, Routh AL
Gigascience, 12:giad009, 20 Mar 2023
Cited by: 9 articles | PMID: 36939008 | PMCID: PMC10025937
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SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3.
Schindewolf C, Lokugamage K, Vu MN, Johnson BA, Scharton D, Plante JA, Kalveram B, Crocquet-Valdes PA, Sotcheff S, Jaworski E, Alvarado RE, Debbink K, Daugherty MD, Weaver SC, Routh AL, Walker DH, Plante KS, Menachery VD
J Virol, 97(2):e0153222, 01 Feb 2023
Cited by: 12 articles | PMID: 36722972 | PMCID: PMC9973020
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Nucleocapsid mutations in SARS-CoV-2 augment replication and pathogenesis.
Johnson BA, Zhou Y, Lokugamage KG, Vu MN, Bopp N, Crocquet-Valdes PA, Kalveram B, Schindewolf C, Liu Y, Scharton D, Plante JA, Xie X, Aguilar P, Weaver SC, Shi PY, Walker DH, Routh AL, Plante KS, Menachery VD
PLoS Pathog, 18(6):e1010627, 21 Jun 2022
Cited by: 85 articles | PMID: 35728038 | PMCID: PMC9275689
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224 Ends of Endemics: Capturing Viral UTRs in Clinically Relevant Arbovirus Samples
Morris V, Zhou Y, Yun R, Thompson J, Khan B, Bolling B, Weaver S, Routh A
J Clin Transl Sci, 6(suppl 1):36-36, 04 Jul 2022
Cited by: 0 articles | PMCID: PMC9209170
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ViReMaShiny: an interactive application for analysis of viral recombination data.
Yeung J, Routh AL
Bioinformatics, 38(18):4420-4422, 01 Sep 2022
Cited by: 3 articles | PMID: 35904541 | PMCID: PMC9477530
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SARS-CoV-2 Uses Nonstructural Protein 16 to Evade Restriction by IFIT1 and IFIT3
Schindewolf C, Lokugamage K, Vu MN, Johnson BA, Scharton D, Plante JA, Kalveram B, Crocquet-Valdes PA, Sotcheff S, Jaworski E, Alvarado RE, Debbink K, Daugherty MD, Weaver SC, Routh AL, Walker DH, Plante KS, Menachery VD
bioRxiv, 26 Sep 2022
Cited by: 0 articles | PPR: PPR550249
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Selective ablation of 3' RNA ends and processive RTs facilitate direct cDNA sequencing of full-length host cell and viral transcripts.
Gallardo CM, Nguyen AT, Routh AL, Torbett BE
Nucleic Acids Res, 50(17):e98, 01 Sep 2022
Cited by: 5 articles | PMID: 35736235 | PMCID: PMC9508845
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Zika Virus Infection Alters Gene Expression and Poly-Adenylation Patterns in Placental Cells.
Sotcheff SL, Chen JY, Elrod N, Cao J, Jaworski E, Kuyumcu-Martinez MN, Shi PY, Routh AL
Pathogens, 11(8):936, 18 Aug 2022
Cited by: 1 article | PMID: 36015056 | PMCID: PMC9414685
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Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability
Zhou Y, Routh AL
bioRxiv, 29 Jul 2022
Cited by: 0 articles | PPR: PPR525208
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QTQTN motif upstream of the furin-cleavage site plays a key role in SARS-CoV-2 infection and pathogenesis.
Vu MN, Lokugamage KG, Plante JA, Scharton D, Bailey AO, Sotcheff S, Swetnam DM, Johnson BA, Schindewolf C, Alvarado RE, Crocquet-Valdes PA, Debbink K, Weaver SC, Walker DH, Russell WK, Routh AL, Plante KS, Menachery VD
Proc Natl Acad Sci U S A, 119(32):e2205690119, 26 Jul 2022
Cited by: 26 articles | PMID: 35881779 | PMCID: PMC9371735
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Next-generation sequencing: A new avenue to understand viral RNA-protein interactions.
Zhou Y, Sotcheff SL, Routh AL
J Biol Chem, 298(5):101924, 09 Apr 2022
Cited by: 3 articles | PMID: 35413291 | PMCID: PMC8994257
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Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa.
Wang S, Sotcheff SL, Gallardo CM, Jaworski E, Torbett BE, Routh AL
Nucleic Acids Res, 50(7):e41, 01 Apr 2022
Cited by: 5 articles | PMID: 35018461 | PMCID: PMC9023271
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Chikungunya Virus Infects the Heart and Induces Heart-Specific Transcriptional Changes in an Immunodeficient Mouse Model of Infection.
Langsjoen RM, Zhou Y, Holcomb RJ, Routh AL
Am J Trop Med Hyg, 106(1):99-104, 29 Nov 2021
Cited by: 5 articles | PMID: 34844209 | PMCID: PMC8733537
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ViReMaShiny: An Interactive Application for Analysis of Viral Recombination Data
Yeung J, Routh AL
bioRxiv, 06 Apr 2022
Cited by: 0 articles | PPR: PPR479080
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ViReMa: A Virus Recombination Mapper of Next-Generation Sequencing data characterizes diverse recombinant viral nucleic acids
Sotcheff S, Zhou Y, Sun Y, Johnson JE, Torbett BE, Routh AL
bioRxiv, 13 Mar 2022
Cited by: 0 articles | PPR: PPR468073
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Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants.
Jaworski E, Langsjoen RM, Mitchell B, Judy B, Newman P, Plante JA, Plante KS, Miller AL, Zhou Y, Swetnam D, Sotcheff S, Morris V, Saada N, Machado RR, McConnell A, Widen SG, Thompson J, Dong J, Ren P, [...] Routh AL
Elife, 10:e68479, 28 Sep 2021
Cited by: 20 articles | PMID: 34581669 | PMCID: PMC8478411
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Selective Ablation of 3’ RNA ends and Processive RTs Facilitate Direct cDNA Sequencing of Full-length Host Cell and Viral Transcripts
Gallardo CM, Nguyen AT, Routh AL, Torbett BE
bioRxiv, 28 Jan 2022
Cited by: 0 articles | PPR: PPR447237
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QTQTN motif upstream of the furin-cleavage site plays key role in SARS-CoV-2 infection and pathogenesis
Vu MN, Lokugamage KG, Plante JA, Scharton D, Johnson BA, Sotcheff S, Swetnam DM, Schindewolf C, Alvarado RE, Crocquet-Valdes PA, Debbink K, Weaver SC, Walker DH, Routh AL, Plante KS, Menachery VD
bioRxiv, 17 Dec 2021
Cited by: 0 articles | PPR: PPR433484
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This article is in the Europe PMC Open access subset. Refer to the copyright information in the article for licensing details.
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Nucleocapsid mutations in SARS-CoV-2 augment replication and pathogenesis
Johnson BA, Zhou Y, Lokugamage KG, Vu MN, Bopp N, Crocquet-Valdes PA, Kalveram B, Schindewolf C, Liu Y, Scharton D, Plante JA, Xie X, Aguilar P, Weaver SC, Shi P, Walker DH, Routh AL, Plante KS, Menachery VD
bioRxiv, 15 Oct 2021
Cited by: 0 articles | PPR: PPR407583
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Co-variation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa
Wang S, Sotcheff SL, Gallardo CM, Jaworski E, Torbett BE, Routh AL
bioRxiv, 16 Sep 2021
Cited by: 0 articles | PPR: PPR395911
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1-25 of 42 results

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Search life-sciences literature (45,104,206 articles, preprints and more)

Search results

SARS-CoV-2 EndoU-ribonuclease regulates RNA recombination and impacts viral fitness

Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability.

RpoS activates formation ofSalmonellaTyphi biofilms and drives persistence in the gall bladder

Diverse Clinical Manifestations and Challenges of Mucormycosis: Insights From Serial Cases.

Loss-of-function mutation in Omicron variants reduces spike protein expression and attenuates SARS-CoV-2 infection

ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids.

SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3.

Nucleocapsid mutations in SARS-CoV-2 augment replication and pathogenesis.

224 Ends of Endemics: Capturing Viral UTRs in Clinically Relevant Arbovirus Samples

ViReMaShiny: an interactive application for analysis of viral recombination data.

SARS-CoV-2 Uses Nonstructural Protein 16 to Evade Restriction by IFIT1 and IFIT3

Selective ablation of 3' RNA ends and processive RTs facilitate direct cDNA sequencing of full-length host cell and viral transcripts.

Zika Virus Infection Alters Gene Expression and Poly-Adenylation Patterns in Placental Cells.

Bipartite viral RNA genome heterodimerization influences genome packaging and virion thermostability

QTQTN motif upstream of the furin-cleavage site plays a key role in SARS-CoV-2 infection and pathogenesis.

Next-generation sequencing: A new avenue to understand viral RNA-protein interactions.

Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa.

Chikungunya Virus Infects the Heart and Induces Heart-Specific Transcriptional Changes in an Immunodeficient Mouse Model of Infection.

ViReMaShiny: An Interactive Application for Analysis of Viral Recombination Data

ViReMa: A Virus Recombination Mapper of Next-Generation Sequencing data characterizes diverse recombinant viral nucleic acids

Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants.

Selective Ablation of 3’ RNA ends and Processive RTs Facilitate Direct cDNA Sequencing of Full-length Host Cell and Viral Transcripts

QTQTN motif upstream of the furin-cleavage site plays key role in SARS-CoV-2 infection and pathogenesis

Nucleocapsid mutations in SARS-CoV-2 augment replication and pathogenesis

Co-variation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa

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