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Oncogenic ETS fusions promote DNA damage and proinflammatory responses via pericentromeric RNAs in extracellular vesicles.
Ruzanov P, Evdokimova V, Pachva MC, Minkovich A, Zhang Z, Langman S, Gassmann H, Thiel U, Orlic-Milacic M, Zaidi SH, Peltekova V, Heisler LE, Sharma M, Cox ME, McKee TD, Zaidi M, Lapouble E, McPherson JD, Delattre O, [...] Sorensen PH
J Clin Invest, 134(9):e169470, 26 Mar 2024
Cited by: 0 articles | PMID: 38530366 | PMCID: PMC11060741
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Ewing Sarcoma-Derived Extracellular Vesicles Impair Dendritic Cell Maturation and Function.
Gassmann H, Schneider K, Evdokimova V, Ruzanov P, Schober SJ, Xue B, von Heyking K, Thiede M, Richter GHS, Pfaffl MW, Noessner E, Stein LD, Sorensen PH, Burdach SEG, Thiel U
Cells, 10(8):2081, 13 Aug 2021
Cited by: 15 articles | PMID: 34440851 | PMCID: PMC8391167
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Exosomes transmit retroelement RNAs to drive inflammation and immunosuppression in Ewing Sarcoma
Evdokimova V, Ruzanov P, Gassmann H, Zaidi SH, Peltekova V, Heisler LE, McPherson JD, Orlic-Milacic M, Specht K, Steiger K, Schober SJ, Thiel U, McKee TD, Zaidi M, Spring CM, Lapouble E, Delattre O, Burdach S, Stein LD, Sorensen PH
bioRxiv, 16 Oct 2019
Cited by: 1 article | PPR: PPR98413
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Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE.
Trinh QM, Jen FY, Zhou Z, Chu KM, Perry MD, Kephart ET, Contrino S, Ruzanov P, Stein LD
BMC Genomics, 14:494, 22 Jul 2013
Cited by: 3 articles | PMID: 23875683 | PMCID: PMC3734164
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The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details.
Washington NL, Stinson EO, Perry MD, Ruzanov P, Contrino S, Smith R, Zha Z, Lyne R, Carr A, Lloyd P, Kephart E, McKay SJ, Micklem G, Stein LD, Lewis SE
Database (Oxford), 2011:bar023, 19 Aug 2011
Cited by: 25 articles | PMID: 21856757 | PMCID: PMC3170170
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modMine: flexible access to modENCODE data.
Contrino S, Smith RN, Butano D, Carr A, Hu F, Lyne R, Rutherford K, Kalderimis A, Sullivan J, Carbon S, Kephart ET, Lloyd P, Stinson EO, Washington NL, Perry MD, Ruzanov P, Zha Z, Lewis SE, Stein LD, Micklem G
Nucleic Acids Res, 40(database issue):D1082-8, 12 Nov 2011
Cited by: 94 articles | PMID: 22080565 | PMCID: PMC3245176
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Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, [...] Waterston RH
Science, 330(6012):1775-1787, 22 Dec 2010
Cited by: 675 articles | PMID: 21177976 | PMCID: PMC3142569
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Identification of functional elements and regulatory circuits by Drosophila modENCODE.
modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, [...] Kellis M
Science, 330(6012):1787-1797, 22 Dec 2010
Cited by: 820 articles | PMID: 21177974 | PMCID: PMC3192495
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Deep SAGE analysis of the Caenorhabditis elegans transcriptome.
Ruzanov P, Riddle DL
Nucleic Acids Res, 38(10):3252-3262, 03 Feb 2010
Cited by: 11 articles | PMID: 20129939 | PMCID: PMC2879516
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Translational activation of snail1 and other developmentally regulated transcription factors by YB-1 promotes an epithelial-mesenchymal transition.
Evdokimova V, Tognon C, Ng T, Ruzanov P, Melnyk N, Fink D, Sorokin A, Ovchinnikov LP, Davicioni E, Triche TJ, Sorensen PH
Cancer Cell, 15(5):402-415, 01 May 2009
Cited by: 302 articles | PMID: 19411069
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ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult.
McGhee JD, Fukushige T, Krause MW, Minnema SE, Goszczynski B, Gaudet J, Kohara Y, Bossinger O, Zhao Y, Khattra J, Hirst M, Jones SJ, Marra MA, Ruzanov P, Warner A, Zapf R, Moerman DG, Kalb JM
Dev Biol, 327(2):551-565, 09 Dec 2008
Cited by: 103 articles | PMID: 19111532 | PMCID: PMC2706090
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Discovery of novel alternatively spliced C. elegans transcripts by computational analysis of SAGE data.
Ruzanov P, Jones SJ, Riddle DL
BMC Genomics, 8:447, 30 Nov 2007
Cited by: 6 articles | PMID: 18053145 | PMCID: PMC2216036
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Genes that may modulate longevity in C. elegans in both dauer larvae and long-lived daf-2 adults.
Ruzanov P, Riddle DL, Marra MA, McKay SJ, Jones SM
Exp Gerontol, 42(8):825-839, 21 Apr 2007
Cited by: 20 articles | PMID: 17543485 | PMCID: PMC2755518
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Akt-mediated YB-1 phosphorylation activates translation of silent mRNA species.
Evdokimova V, Ruzanov P, Anglesio MS, Sorokin AV, Ovchinnikov LP, Buckley J, Triche TJ, Sonenberg N, Sorensen PH
Mol Cell Biol, 26(1):277-292, 01 Jan 2006
Cited by: 174 articles | PMID: 16354698 | PMCID: PMC1317623
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An interactive tool for visualization of relationships between gene expression profiles.
Ruzanov P, Jones SJ
BMC Bioinformatics, 7:193, 06 Apr 2006
Cited by: 1 article | PMID: 16600045 | PMCID: PMC1456991
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[Major mRNP proteins in the structural organization and function of mRNA in eukaryotic cells].
Ovchinnikov LP, Skabkin MA, Ruzanov PV, Evdokimova VM
Mol Biol (Mosk), 35(4):548-558, 01 Jul 2001
Cited by: 7 articles | PMID: 11524943
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The major mRNA-associated protein YB-1 is a potent 5' cap-dependent mRNA stabilizer.
Evdokimova V, Ruzanov P, Imataka H, Raught B, Svitkin Y, Ovchinnikov LP, Sonenberg N
EMBO J, 20(19):5491-5502, 01 Oct 2001
Cited by: 179 articles | PMID: 11574481 | PMCID: PMC125650
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Interaction of the universal mRNA-binding protein, p50, with actin: a possible link between mRNA and microfilaments.
Ruzanov PV, Evdokimova VM, Korneeva NL, Hershey JW, Ovchinnikov LP
J Cell Sci, 112 ( Pt 20):3487-3496, 01 Oct 1999
Cited by: 35 articles | PMID: 10504297
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cDNA cloning, genomic structure, and chromosome mapping of the human epithelial membrane protein CL-20 gene (EMP1), a member of the PMP22 family.
Chen Y, Medvedev A, Ruzanov P, Marvin KW, Jetten AM
Genomics, 41(1):40-48, 01 Apr 1997
Cited by: 17 articles | PMID: 9126480
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