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Search life-sciences literature (45,103,589 articles, preprints and more)

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The crucial role of bioimage analysts in scientific research and publication.
Cimini BA, Bankhead P, D'Antuono R, Fazeli E, Fernandez-Rodriguez J, Fuster-Barceló C, Haase R, Jambor HK, Jones ML, Jug F, Klemm AH, Kreshuk A, Marcotti S, Martins GG, McArdle S, Miura K, Muñoz-Barrutia A, Murphy LC, Nelson MS, [...] Eliceiri KW
J Cell Sci, 137(20):jcs262322, 30 Oct 2024
Cited by: 0 articles | PMID: 39475207
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Community-developed checklists for publishing images and image analyses.
Schmied C, Nelson MS, Avilov S, Bakker GJ, Bertocchi C, Bischof J, Boehm U, Brocher J, Carvalho MT, Chiritescu C, Christopher J, Cimini BA, Conde-Sousa E, Ebner M, Ecker R, Eliceiri K, Fernandez-Rodriguez J, Gaudreault N, Gelman L, [...] Jambor HK
Nat Methods, 21(2):170-181, 14 Sep 2023
Cited by: 19 articles | PMID: 37710020
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SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data.
Lee L, Yu H, Jia BB, Jussila A, Zhu C, Chen J, Xie L, Hafner A, Mishra S, Wang DD, Strambio-De-Castillia C, Boettiger A, Ren B, Li Y, Hu M
Nat Commun, 14(1):4873, 12 Aug 2023
Cited by: 4 articles | PMID: 37573342 | PMCID: PMC10423204
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Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.
Dekker J, Alber F, Aufmkolk S, Beliveau BJ, Bruneau BG, Belmont AS, Bintu L, Boettiger A, Calandrelli R, Disteche CM, Gilbert DM, Gregor T, Hansen AS, Huang B, Huangfu D, Kalhor R, Leslie CS, Li W, Li Y, [...] Zhong S
Mol Cell, 83(15):2624-2640, 06 Jul 2023
Cited by: 21 articles | PMID: 37419111 | PMCID: PMC10528254
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Toward a common standard for data and specimen provenance in life sciences.
Wittner R, Holub P, Mascia C, Frexia F, Müller H, Plass M, Allocca C, Betsou F, Burdett T, Cancio I, Chapman A, Chapman M, Courtot M, Curcin V, Eder J, Elliot M, Exter K, Goble C, Golebiewski M, [...] Geiger J
Learn Health Syst, 8(1):e10365, 18 Apr 2023
Cited by: 5 articles | PMID: 38249839 | PMCID: PMC10797572
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SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
Lee L, Yu H, Jia BB, Jussila A, Zhu C, Chen J, Xie L, Hafner A, Strambio-De-Castillia C, Boettiger A, Ren B, Li Y, Hu M
bioRxiv, 19 Dec 2022
Cited by: 0 articles | PPR: PPR586854
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Author Correction: QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.
Boehm U, Nelson G, Brown CM, Bagley S, Bajcsy P, Bischof J, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O, Fernandez-Rodriguez J, Ferrand A, Gelman L, Gheisari A, Hartmann H, Kukat C, Laude A, Mitkovski M, Munck S, [...] Nitschke R
Nat Methods, 19(2):256, 01 Feb 2022
Cited by: 0 articles | PMID: 34980905
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Author Correction: Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.
Rigano A, Ehmsen S, Öztürk SU, Ryan J, Balashov A, Hammer M, Kirli K, Boehm U, Brown CM, Bellve K, Chambers JJ, Cosolo A, Coleman RA, Faklaris O, Fogarty KE, Guilbert T, Hamacher AB, Itano MS, Keeley DP, [...] Strambio-De-Castillia C
Nat Methods, 19(2):256, 01 Feb 2022
Cited by: 0 articles | PMID: 34952955 | PMCID: PMC8828465
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QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.
Boehm U, Nelson G, Brown CM, Bagley S, Bajcsy P, Bischof J, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O, Fernandez-Rodriguez J, Ferrand A, Gelman L, Gheisari A, Hartmann H, Kukat C, Laude A, Mitkovski M, Munck S, [...] Nitschke R
Nat Methods, 18(12):1423-1426, 01 Dec 2021
Cited by: 34 articles | PMID: 34021279 | PMCID: PMC9443067
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Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.
Hammer M, Huisman M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P, Brown CM, Corbett AD, Faklaris O, Lacoste J, Laude A, Nelson G, Nitschke R, Farzam F, Smith CS, [...] Strambio-De-Castillia C
Nat Methods, 18(12):1427-1440, 01 Dec 2021
Cited by: 25 articles | PMID: 34862501 | PMCID: PMC9271325
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Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.
Rigano A, Ehmsen S, Öztürk SU, Ryan J, Balashov A, Hammer M, Kirli K, Boehm U, Brown CM, Bellve K, Chambers JJ, Cosolo A, Coleman RA, Faklaris O, Fogarty KE, Guilbert T, Hamacher AB, Itano MS, Keeley DP, [...] Strambio-De-Castillia C
Nat Methods, 18(12):1489-1495, 03 Dec 2021
Cited by: 18 articles | PMID: 34862503 | PMCID: PMC8648560
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Author Correction: Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.
Hammer M, Huisman M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P, Brown CM, Corbett AD, Faklaris O, Lacoste J, Laude A, Nelson G, Nitschke R, Farzam F, Smith CS, [...] Strambio-De-Castillia C
Nat Methods, 19(2):255, 01 Feb 2022
Cited by: 0 articles | PMID: 34980906
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MethodsJ2: a software tool to capture metadata and generate comprehensive microscopy methods text.
Ryan J, Pengo T, Rigano A, Llopis PM, Itano MS, Cameron LA, Marqués G, Strambio-De-Castillia C, Sanders MA, Brown CM
Nat Methods, 18(12):1414-1416, 01 Dec 2021
Cited by: 8 articles | PMID: 34654919 | PMCID: PMC9488561
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MDEmic: a metadata annotation tool to facilitate management of FAIR image data in the bioimaging community.
Kunis S, Hänsch S, Schmidt C, Wong F, Strambio-De-Castillia C, Weidtkamp-Peters S
Nat Methods, 18(12):1416-1417, 01 Dec 2021
Cited by: 11 articles | PMID: 34635849 | PMCID: PMC9514507
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REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.
Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, [...] Brazma A
Nat Methods, 18(12):1418-1422, 01 Dec 2021
Cited by: 48 articles | PMID: 34021280 | PMCID: PMC8606015
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MethodsJ2: A Software Tool to Improve Microscopy Methods Reporting
Ryan J, Pengo T, Rigano A, Llopis PM, Itano MS, Cameron L, Marqués G, Strambio-De-Castillia C, Sanders MA, Brown CM
bioRxiv, 24 Jun 2021
Cited by: 0 articles | PPR: PPR361025
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QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy.
Nelson G, Boehm U, Bagley S, Bajcsy P, Bischof J, Brown CM, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O, Fernandez-Rodriguez J, Ferrand A, Gelman L, Gheisari A, Hartmann H, Kukat C, Laude A, Mitkovski M, Munck S, [...] Nitschke R
J Microsc, 284(1):56-73, 11 Aug 2021
Cited by: 28 articles | PMID: 34214188 | PMCID: PMC10388377
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Micro-Meta App: an interactive software tool to facilitate the collection of microscopy metadata based on community-driven specifications
Rigano A, Ehmsen S, Ozturk SU, Ryan J, Balashov A, Hammer M, Kirli K, Bellve K, Boehm U, Brown CM, Chambers JJ, Coleman RA, Cosolo A, Faklaris O, Fogarty K, Guilbert T, Hamacher AB, Itano MS, Keeley DP, [...] Strambio-De-Castillia C
bioRxiv, 31 May 2021
Cited by: 0 articles | PPR: PPR350018
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Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
Hammer M, Huisman M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P, Brown CM, Corbett AD, Faklaris O, Lacoste J, Laude A, Nelson G, Nitschke R, Farzam F, Smith CS, [...] Strambio-De-Castillia C
bioRxiv, 26 Apr 2021
Cited by: 0 articles | PPR: PPR316507
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The DHODH inhibitor PTC299 arrests SARS-CoV-2 replication and suppresses induction of inflammatory cytokines.
Luban J, Sattler RA, Mühlberger E, Graci JD, Cao L, Weetall M, Trotta C, Colacino JM, Bavari S, Strambio-De-Castillia C, Suder EL, Wang Y, Soloveva V, Cintron-Lue K, Naryshkin NA, Pykett M, Welch EM, O'Keefe K, Kong R, [...] Peltz SW
Virus Res, 292:198246, 26 Nov 2020
Cited by: 40 articles | PMID: 33249060 | PMCID: PMC7690341
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The DHODH Inhibitor PTC299 Arrests SARS-CoV-2 Replication and Suppresses Induction of Inflammatory Cytokines
Luban J, Sattler R, Mühlberger E, Graci JD, Cao L, Weetall M, Trotta C, Colacino JM, Bavari S, Strambio-De-Castillia C, Suder EL, Wang Y, Soloveva V, Cintron-Lue K, Naryshkin NA, Pykett M, Welch EM, O’Keefe K, Kong R, [...] Peltz S
bioRxiv, 05 Aug 2020
Cited by: 0 articles | PPR: PPR197190
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Cyclophilin A protects HIV-1 from restriction by human TRIM5α.
Kim K, Dauphin A, Komurlu S, McCauley SM, Yurkovetskiy L, Carbone C, Diehl WE, Strambio-De-Castillia C, Campbell EM, Luban J
Nat Microbiol, 4(12):2044-2051, 21 Oct 2019
Cited by: 89 articles | PMID: 31636416 | PMCID: PMC6879858
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Cyclophilin A protects HIV-1 from restriction by human TRIM5α
Kim K, Dauphin A, Komurlu S, Yurkovetskiy L, Diehl WE, McCauley SM, Carbone C, Strambio-De-Castillia C, Campbell EM, Luban J
bioRxiv, 25 Mar 2019
Cited by: 0 articles | PPR: PPR74141
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OMEGA: a software tool for the management, analysis, and dissemination of intracellular trafficking data that incorporates motion type classification and quality control
Rigano A, Galli V, Clark JM, Pereira LE, Grossi L, Luban J, Giulietti R, Leidi T, Hunter E, Valle M, Sbalzarini IF, Strambio-De-Castillia C
bioRxiv, 23 Feb 2018
Cited by: 1 article | PPR: PPR18202
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Proposal for minimum information guidelines to report and reproduce results of particle tracking and motion analysis
Rigano A, Strambio-De-Castillia C
bioRxiv, 13 Jul 2017
Cited by: 1 article | PPR: PPR27487
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