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Search life-sciences literature (45,103,589 articles, preprints and more)

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Combinatorial control of <i>Pseudomonas aeruginosa</i> biofilm development by quorum-sensing and nutrient-sensing regulators.
Chen G, Fanouraki G, Anandhi Rangarajan A, Winkelman BT, Winkelman JT, Waters CM, Mukherjee S
mSystems, 9(9):e0037224, 14 Aug 2024
Cited by: 1 article | PMID: 39140783 | PMCID: PMC11406991
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Combinatorial control of biofilm development by quorum-sensing and nutrient-sensing regulators inPseudomonas aeruginosa
Chen G, Fanouraki G, Rangarajan AA, Winkelman BT, Winkelman JT, Waters CM, Mukherjee S
bioRxiv, 28 Sep 2022
Cited by: 0 articles | PPR: PPR551608
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Structural and mechanistic basis of σ-dependent transcriptional pausing.
Pukhrambam C, Molodtsov V, Kooshkbaghi M, Tareen A, Vu H, Skalenko KS, Su M, Yin Z, Winkelman JT, Kinney JB, Ebright RH, Nickels BE
Proc Natl Acad Sci U S A, 119(23):e2201301119, 02 Jun 2022
Cited by: 7 articles | PMID: 35653571 | PMCID: PMC9191641
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Structural and mechanistic basis of σ-dependent transcriptional pausing
Pukhrambam C, Molodtsov V, Kooshbaghi M, Tareen A, Vu H, Skalenko KS, Su M, Zhou Y, Winkelman JT, Kinney JB, Ebright RH, Nickels BE
bioRxiv, 25 Jan 2022
Cited by: 0 articles | PPR: PPR446188
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Structural and mechanistic basis of reiterative transcription initiation.
Liu Y, Yu L, Pukhrambam C, Winkelman JT, Firlar E, Kaelber JT, Zhang Y, Nickels BE, Ebright RH
Proc Natl Acad Sci U S A, 119(5):e2115746119, 01 Feb 2022
Cited by: 2 articles | PMID: 35082149 | PMCID: PMC8812562
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Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli.
Skalenko KS, Li L, Zhang Y, Vvedenskaya IO, Winkelman JT, Cope AL, Taylor DM, Shah P, Ebright RH, Kinney JB, Zhang Y, Nickels BE
Proc Natl Acad Sci U S A, 118(27):e2106388118, 01 Jul 2021
Cited by: 5 articles | PMID: 34187896 | PMCID: PMC8271711
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Promoter-sequence determinants and structural basis of primer-dependent transcription initiation inEscherichia coli
Skalenko KS, Li L, Zhang Y, Vvedenskaya IO, Winkelman JT, Cope A, Taylor DM, Shah P, Ebright RH, Kinney JB, Zhang Y, Nickels BE
bioRxiv, 07 Apr 2021
Cited by: 0 articles | PPR: PPR308163
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Structural and mechanistic basis of reiterative transcription initiation
Liu Y, Winkelman JT, Yu L, Pukhrambam C, Firlar E, Kaelber JT, Zhang Y, Nickels BE, Ebright RH
bioRxiv, 09 May 2021
Cited by: 0 articles | PPR: PPR337360
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XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing.
Winkelman JT, Pukhrambam C, Vvedenskaya IO, Zhang Y, Taylor DM, Shah P, Ebright RH, Nickels BE
Mol Cell, 79(5):797-811.e8, 03 Aug 2020
Cited by: 13 articles | PMID: 32750314 | PMCID: PMC7484426
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Stepwise Promoter Melting by Bacterial RNA Polymerase.
Chen J, Chiu C, Gopalkrishnan S, Chen AY, Olinares PDB, Saecker RM, Winkelman JT, Maloney MF, Chait BT, Ross W, Gourse RL, Campbell EA, Darst SA
Mol Cell, 78(2):275-288.e6, 10 Mar 2020
Cited by: 64 articles | PMID: 32160514 | PMCID: PMC7166197
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XACT-seq comprehensively defines the promoter-position and promoter-sequence determinants for initial-transcription pausing
Winkelman JT, Pukhrambam C, Vvedenskaya IO, Zhang Y, Taylor DM, Shah P, Ebright RH, Nickels BE
bioRxiv, 23 Dec 2019
Cited by: 0 articles | PPR: PPR106842
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The mechanism of variability in transcription start site selection.
Yu L, Winkelman JT, Pukhrambam C, Strick TR, Nickels BE, Ebright RH
Elife, 6:e32038, 23 Nov 2017
Cited by: 11 articles | PMID: 29168694 | PMCID: PMC5730371
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The mechanism of transcription start site selection
Yu L, Winkelman JT, Pukhrambam C, Strick TR, Nickels BE, Ebright RH
bioRxiv, 28 Jun 2017
Cited by: 0 articles | PPR: PPR21579
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6S RNA Mimics B-Form DNA to Regulate Escherichia coli RNA Polymerase.
Chen J, Wassarman KM, Feng S, Leon K, Feklistov A, Winkelman JT, Li Z, Walz T, Campbell EA, Darst SA
Mol Cell, 68(2):388-397.e6, 05 Oct 2017
Cited by: 41 articles | PMID: 28988932 | PMCID: PMC5683422
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Open complex DNA scrunching: A key to transcription start site selection and promoter escape.
Winkelman JT, Gourse RL
Bioessays, 39(2), 04 Jan 2017
Cited by: 13 articles | PMID: 28052345 | PMCID: PMC5313389
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Open complex scrunching before nucleotide addition accounts for the unusual transcription start site of E. coli ribosomal RNA promoters.
Winkelman JT, Chandrangsu P, Ross W, Gourse RL
Proc Natl Acad Sci U S A, 113(13):E1787-95, 14 Mar 2016
Cited by: 38 articles | PMID: 26976590 | PMCID: PMC4822585
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Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection.
Winkelman JT, Vvedenskaya IO, Zhang Y, Zhang Y, Bird JG, Taylor DM, Gourse RL, Ebright RH, Nickels BE
Science, 351(6277):1090-1093, 01 Mar 2016
Cited by: 43 articles | PMID: 26941320 | PMCID: PMC4797950
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TRANSCRIPTION. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies.
Yang Y, Darbari VC, Zhang N, Lu D, Glyde R, Wang YP, Winkelman JT, Gourse RL, Murakami KS, Buck M, Zhang X
Science, 349(6250):882-885, 01 Aug 2015
Cited by: 48 articles | PMID: 26293966 | PMCID: PMC4681505
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Crosslink Mapping at Amino Acid-Base Resolution Reveals the Path of Scrunched DNA in Initial Transcribing Complexes.
Winkelman JT, Winkelman BT, Boyce J, Maloney MF, Chen AY, Ross W, Gourse RL
Mol Cell, 59(5):768-780, 06 Aug 2015
Cited by: 37 articles | PMID: 26257284 | PMCID: PMC4561013
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RemA is a DNA-binding protein that activates biofilm matrix gene expression in Bacillus subtilis.
Winkelman JT, Bree AC, Bate AR, Eichenberger P, Gourse RL, Kearns DB
Mol Microbiol, 88(5):984-997, 07 May 2013
Cited by: 29 articles | PMID: 23646920 | PMCID: PMC3732408
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RemA (YlzA) and RemB (YaaB) regulate extracellular matrix operon expression and biofilm formation in Bacillus subtilis.
Winkelman JT, Blair KM, Kearns DB
J Bacteriol, 191(12):3981-3991, 10 Apr 2009
Cited by: 28 articles | PMID: 19363116 | PMCID: PMC2698397
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A molecular clutch disables flagella in the Bacillus subtilis biofilm.
Blair KM, Turner L, Winkelman JT, Berg HC, Kearns DB
Science, 320(5883):1636-1638, 01 Jun 2008
Cited by: 192 articles | PMID: 18566286
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1-22 of 22 results

Search life-sciences literature (45,103,589 articles, preprints and more)

Search results

Combinatorial control of <i>Pseudomonas aeruginosa</i> biofilm development by quorum-sensing and nutrient-sensing regulators.

Combinatorial control of biofilm development by quorum-sensing and nutrient-sensing regulators inPseudomonas aeruginosa

Structural and mechanistic basis of σ-dependent transcriptional pausing.

Structural and mechanistic basis of σ-dependent transcriptional pausing

Structural and mechanistic basis of reiterative transcription initiation.

Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli.

Promoter-sequence determinants and structural basis of primer-dependent transcription initiation inEscherichia coli

Structural and mechanistic basis of reiterative transcription initiation

XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing.

Stepwise Promoter Melting by Bacterial RNA Polymerase.

XACT-seq comprehensively defines the promoter-position and promoter-sequence determinants for initial-transcription pausing

The mechanism of variability in transcription start site selection.

The mechanism of transcription start site selection

6S RNA Mimics B-Form DNA to Regulate Escherichia coli RNA Polymerase.

Open complex DNA scrunching: A key to transcription start site selection and promoter escape.

Open complex scrunching before nucleotide addition accounts for the unusual transcription start site of E. coli ribosomal RNA promoters.

Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection.

TRANSCRIPTION. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies.

Crosslink Mapping at Amino Acid-Base Resolution Reveals the Path of Scrunched DNA in Initial Transcribing Complexes.

RemA is a DNA-binding protein that activates biofilm matrix gene expression in Bacillus subtilis.

RemA (YlzA) and RemB (YaaB) regulate extracellular matrix operon expression and biofilm formation in Bacillus subtilis.

A molecular clutch disables flagella in the Bacillus subtilis biofilm.

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