GRANT_AGENCY_ID:"218205/Z/19/Z_agency_Wellcome Trust" - Search results

Development and implementation of a core genome multilocus sequence typing scheme for Haemophilus influenzae.

Krisna MA, Jolley KA, Monteith W, Boubour A, Hamers RL, Brueggemann AB, Harrison OB, Maiden MCJ

Microb Genom, 10(8), 01 Aug 2024

Cited by: 0 articles | PMID: 39120932 | PMCID: PMC11315579

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Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structure.

Jansen van Rensburg MJ, Berger DJ, Yassine I, Shaw D, Fohrmann A, Bray JE, Jolley KA, Maiden MCJ, Brueggemann AB

Microb Genom, 10(8), 01 Aug 2024

Cited by: 1 article | PMID: 39137139 | PMCID: PMC11321556

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Genomic diversity and antimicrobial susceptibility of invasive Neisseria meningitidis in South Africa, 2016-2021.

Mikhari RL, Meiring S, de Gouveia L, Chan WY, Jolley KA, Van Tyne D, Harrison LH, Marjuki H, Ismail A, Quan V, Cohen C, Walaza S, von Gottberg A, du Plessis M

J Infect Dis, jiae225, 30 Apr 2024

Cited by: 0 articles | PMID: 38687883

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Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus.

Lin GL, Drysdale SB, Snape MD, O'Connor D, Brown A, MacIntyre-Cockett G, Mellado-Gomez E, de Cesare M, Ansari MA, Bonsall D, Bray JE, Jolley KA, Bowden R, Aerssens J, Bont L, Openshaw PJM, Martinon-Torres F, Nair H, Golubchik T, [...] RESCEU Consortium

Nat Commun, 15(1):2379, 16 Mar 2024

Cited by: 5 articles | PMID: 38493135 | PMCID: PMC10944482

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Recombinational exchange of M-fibril and T-pilus genes generates extensive cell surface diversity in the global group A Streptococcus population.

Bessen DE, Beall BW, Hayes A, Huang W, DiChiara JM, Velusamy S, Tettelin H, Jolley KA, Fallon JT, Chochua S, Alobaidallah MSA, Higgs C, Barnett TC, Steemson JT, Proft T, Davies MR

mBio, 15(5):e0069324, 09 Apr 2024

Cited by: 0 articles | PMID: 38587426 | PMCID: PMC11078000

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Characterizing the diversity and commensal origins of penA mosaicism in the genus Neisseria.

Unitt A, Maiden M, Harrison O

Microb Genom, 10(2), 01 Feb 2024

Cited by: 1 article | PMID: 38381035 | PMCID: PMC10926701

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Bacterial strain nomenclature in the genomic era: Life Identification Numbers using a gene-by-gene approach

Palma F, Hennart M, Jolley KA, Crestani C, Wyres KL, Bridel S, Yeats CA, Brancotte B, Raffestin B, David S, Lam MMC, Izdebski R, Passet V, Rodrigues C, Rethoret-Pasty M, Maiden MCJ, Aanensen DM, Holt KE, Criscuolo A, Brisse S

bioRxiv, 12 Mar 2024

Cited by: 0 articles | PPR: PPR818598

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Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structure

Jansen van Rensburg MJ, Berger DJ, Fohrmann A, Bray JE, Jolley KA, Maiden MC, Brueggemann AB

bioRxiv, 19 Dec 2023

Cited by: 0 articles | PPR: PPR775902

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Trends in invasive bacterial diseases during the first 2 years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries and territories in the IRIS Consortium

Shaw D, Abad R, Amin-Chowdhury Z, Bautista A, Bennett D, Broughton K, Cao B, Casanova C, Choi E, Chu Y, Claus H, Coelho J, Corcoran M, Cottrell S, Cunney R, Cuypers L, Dalby T, Davies H, de Gouveia L, [...] Brueggemann A

Lancet Digit Health, 5(9):e582-e593, 27 Jul 2023

Cited by: 0 articles | PMCID: PMC10914672

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Trends in invasive bacterial diseases during the first 2 years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries and territories in the IRIS Consortium.

Shaw D, Abad R, Amin-Chowdhury Z, Bautista A, Bennett D, Broughton K, Cao B, Casanova C, Choi EH, Chu YW, Claus H, Coelho J, Corcoran M, Cottrell S, Cunney R, Cuypers L, Dalby T, Davies H, de Gouveia L, [...] Brueggemann AB

Lancet Digit Health, 5(9):e582-e593, 27 Jul 2023

Cited by: 19 articles | PMID: 37516557

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Nasopharyngeal competition dynamics are likely to be altered following vaccine introduction: bacteriocin prevalence and diversity among Icelandic and Kenyan pneumococci.

Butler MEB, Jansen van Rensburg MJ, Karani A, Mvera B, Akech D, Akter A, Forrest C, van Tonder AJ, Quirk SJ, Haraldsson G, Bentley SD, Erlendsdóttir H, Haraldsson Á, Kristinsson KG, Scott JAG, Brueggemann AB

Microb Genom, 9(7), 01 Jul 2023

Cited by: 1 article | PMID: 37436819 | PMCID: PMC10438807

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Exploiting Real-Time Genomic Surveillance Data To Assess 4CMenB Meningococcal Vaccine Performance in Scotland, 2015 to 2022.

Rodrigues CMC, MacDonald L, Ure R, Smith A, Cameron JC, Maiden MCJ

mBio, 14(2):e0049923, 10 Apr 2023

Cited by: 1 article | PMID: 37036356 | PMCID: PMC10127610

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Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis.

Kalizang'oma A, Kwambana-Adams B, Chan JM, Viswanath A, Gori A, Richard D, Jolley KA, Lees J, Goldblatt D, Beleza S, Bentley SD, Heyderman RS, Chaguza C

J Clin Microbiol, 61(1):e0080222, 14 Dec 2022

Cited by: 2 articles | PMID: 36515506 | PMCID: PMC9879099

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Association between disease severity and co-detection of respiratory pathogens in infants with RSV infection

Lin G, Drysdale SB, Snape MD, O’Connor D, Brown A, MacIntyre-Cockett G, Mellado-Gomez E, de Cesare M, Ansari MA, Bonsall D, Bray JE, Jolley KA, Bowden R, Aerssens J, Bont L, Openshaw PJM, Martinon-Torres F, Nair H, Golubchik T, Pollard AJ

medRxiv, 15 Feb 2023

Cited by: 0 articles | PPR: PPR617632

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Sustained reductions in life-threatening invasive bacterial diseases during the first two years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries participating in the IRIS Consortium

Shaw D, Abad R, Abad R, Amin-Chowdhury Z, Bautista A, Bennett D, Broughton K, Cao B, Casanova C, Choi EH, Chu Y, Claus H, Coelho J, Corcoran M, Cottrell S, Cunney R, Cuypers L, Dalby T, Davies H, [...] Brueggemann AB

medRxiv, 17 Dec 2022

Cited by: 0 articles | PPR: PPR585733

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Genome-Wide Association Studies Identify an Association of Transferrin Binding Protein B Variation and Invasive Serogroup Y Meningococcal Disease in Older Adults.

Maynard-Smith L, Derrick JP, Borrow R, Lucidarme J, Maiden MCJ, Heyderman RS, Harrison OB

J Infect Dis, 226(12):2204-2214, 01 Dec 2022

Cited by: 1 article | PMID: 36322504 | PMCID: PMC9748998

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A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains.

Hennart M, Guglielmini J, Bridel S, Maiden MCJ, Jolley KA, Criscuolo A, Brisse S

Mol Biol Evol, 39(7):msac135, 01 Jul 2022

Cited by: 33 articles | PMID: 35700230 | PMCID: PMC9254007

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Ribosomal MLST nucleotide identity (rMLST-NI), a rapid bacterial species identification method: application to Klebsiella and Raoultella genomic species validation.

Bray JE, Correia A, Varga M, Jolley KA, Maiden MCJ, Rodrigues CMC

Microb Genom, 8(9), 01 Sep 2022

Cited by: 3 articles | PMID: 36098501 | PMCID: PMC9676034

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A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies.

Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S

Nat Commun, 13(1):3807, 01 Jul 2022

Cited by: 9 articles | PMID: 35778384 | PMCID: PMC9249784

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The Neisseria gonorrhoeae Accessory Genome and Its Association with the Core Genome and Antimicrobial Resistance.

de Korne-Elenbaas J, Bruisten SM, van Dam AP, Maiden MCJ, Harrison OB

Microbiol Spectr, 10(3):e0265421, 23 May 2022

Cited by: 6 articles | PMID: 35604129 | PMCID: PMC9241924

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Neisseria gonorrhoeae Population Genomics: Use of the Gonococcal Core Genome to Improve Surveillance of Antimicrobial Resistance.

Harrison OB, Cehovin A, Skett J, Jolley KA, Massari P, Genco CA, Tang CM, Maiden MCJ

J Infect Dis, 222(11):1816-1825, 01 Nov 2020

Cited by: 30 articles | PMID: 32163580 | PMCID: PMC7653085

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Recent advances in understanding and combatting Neisseria gonorrhoeae: a genomic perspective.

Harrison OB, Maiden MC

Fac Rev, 10:65, 27 Aug 2021

Cited by: 3 articles | PMID: 34557869 | PMCID: PMC8442004

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Changes in the incidence of invasive disease due to Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis during the COVID-19 pandemic in 26 countries and territories in the Invasive Respiratory Infection Surveillance Initiative: a prospective analysis of surveillance data.

Brueggemann AB, Jansen van Rensburg MJ, Shaw D, McCarthy ND, Jolley KA, Maiden MCJ, van der Linden MPG, Amin-Chowdhury Z, Bennett DE, Borrow R, Brandileone MC, Broughton K, Campbell R, Cao B, Casanova C, Choi EH, Chu YW, Clark SA, Claus H, [...] Zhou F

Lancet Digit Health, 3(6):e360-e370, 01 Jun 2021

Cited by: 213 articles | PMID: 34045002 | PMCID: PMC8166576

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Genome-wide association studies reveal the role of polymorphisms affecting factor H binding protein expression in host invasion by Neisseria meningitidis.

Earle SG, Lobanovska M, Lavender H, Tang C, Exley RM, Ramos-Sevillano E, Browning DF, Kostiou V, Harrison OB, Bratcher HB, Varani G, Tang CM, Wilson DJ, Maiden MCJ

PLoS Pathog, 17(10):e1009992, 18 Oct 2021

Cited by: 8 articles | PMID: 34662348 | PMCID: PMC8553145

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Meningococcal Deduced Vaccine Antigen Reactivity (MenDeVAR) Index: a Rapid and Accessible Tool That Exploits Genomic Data in Public Health and Clinical Microbiology Applications.

Rodrigues CMC, Jolley KA, Smith A, Cameron JC, Feavers IM, Maiden MCJ

J Clin Microbiol, 59(1):e02161-20, 17 Dec 2020

Cited by: 18 articles | PMID: 33055180 | PMCID: PMC7771438

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Development and implementation of a core genome multilocus sequence typing scheme for Haemophilus influenzae.

Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structure.

Genomic diversity and antimicrobial susceptibility of invasive Neisseria meningitidis in South Africa, 2016-2021.

Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus.

Recombinational exchange of M-fibril and T-pilus genes generates extensive cell surface diversity in the global group A Streptococcus population.

Characterizing the diversity and commensal origins of penA mosaicism in the genus Neisseria.

Bacterial strain nomenclature in the genomic era: Life Identification Numbers using a gene-by-gene approach

Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define pneumococcal population structure

Trends in invasive bacterial diseases during the first 2 years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries and territories in the IRIS Consortium

Trends in invasive bacterial diseases during the first 2 years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries and territories in the IRIS Consortium.

Nasopharyngeal competition dynamics are likely to be altered following vaccine introduction: bacteriocin prevalence and diversity among Icelandic and Kenyan pneumococci.

Exploiting Real-Time Genomic Surveillance Data To Assess 4CMenB Meningococcal Vaccine Performance in Scotland, 2015 to 2022.

Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis.

Association between disease severity and co-detection of respiratory pathogens in infants with RSV infection

Sustained reductions in life-threatening invasive bacterial diseases during the first two years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries participating in the IRIS Consortium

Genome-Wide Association Studies Identify an Association of Transferrin Binding Protein B Variation and Invasive Serogroup Y Meningococcal Disease in Older Adults.

A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains.

Ribosomal MLST nucleotide identity (rMLST-NI), a rapid bacterial species identification method: application to Klebsiella and Raoultella genomic species validation.

A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies.

The Neisseria gonorrhoeae Accessory Genome and Its Association with the Core Genome and Antimicrobial Resistance.

Neisseria gonorrhoeae Population Genomics: Use of the Gonococcal Core Genome to Improve Surveillance of Antimicrobial Resistance.

Recent advances in understanding and combatting Neisseria gonorrhoeae: a genomic perspective.

Changes in the incidence of invasive disease due to Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis during the COVID-19 pandemic in 26 countries and territories in the Invasive Respiratory Infection Surveillance Initiative: a prospective analysis of surveillance data.

Genome-wide association studies reveal the role of polymorphisms affecting factor H binding protein expression in host invasion by Neisseria meningitidis.

Meningococcal Deduced Vaccine Antigen Reactivity (MenDeVAR) Index: a Rapid and Accessible Tool That Exploits Genomic Data in Public Health and Clinical Microbiology Applications.

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