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Search life-sciences literature (45,103,589 articles, preprints and more)

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1-25 of 38 results

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Yeast heterochromatin stably silences only weak regulatory elements by altering burst duration.
Wu K, Dhillon N, Bajor A, Abrahamsson S, Kamakaka RT
Cell Rep, 43(4):113983, 21 Mar 2024
Cited by: 1 article | PMID: 38517895 | PMCID: PMC11141299
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The Genetic Mechanisms Underlying the Concerted Expression of the yellow and tan Genes in Complex Patterns on the Abdomen and Wings of Drosophila guttifera.
Raja KKB, Bachman EA, Fernholz CE, Trine DS, Hobmeier RE, Maki NJ, Massoglia TJ, Werner T
Genes (Basel), 14(2):304, 24 Jan 2023
Cited by: 1 article | PMID: 36833231 | PMCID: PMC9957387
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Genetic-interaction screens uncover novel biological roles and regulators of transcription factors in fission yeast.
Chatfield-Reed K, Marno Jones K, Shah F, Chua G
G3 (Bethesda), 12(9):jkac194, 01 Aug 2022
Cited by: 1 article | PMID: 35924983 | PMCID: PMC9434175
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Dynamic motif occupancy (DynaMO) analysis identifies transcription factors and their binding sites driving dynamic biological processes.
Kuang Z, Ji Z, Boeke JD, Ji H
Nucleic Acids Res, 46(1):e2, 01 Jan 2018
Cited by: 9 articles | PMID: 29325176 | PMCID: PMC5758894
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Inference and interrogation of a coregulatory network in the context of lipid accumulation in Yarrowia lipolytica.
Trébulle P, Nicaud JM, Leplat C, Elati M
NPJ Syst Biol Appl, 3:21, 11 Aug 2017
Cited by: 8 articles | PMID: 28955503 | PMCID: PMC5554221
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Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors.
Österlund T, Bordel S, Nielsen J
Integr Biol (Camb), 7(5):560-568, 09 Apr 2015
Cited by: 8 articles | PMID: 25855217
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Mapping yeast transcriptional networks.
Hughes TR, de Boer CG
Genetics, 195(1):9-36, 01 Sep 2013
Cited by: 52 articles | PMID: 24018767 | PMCID: PMC3761317
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Predicting gene function from uncontrolled expression variation among individual wild-type Arabidopsis plants.
Bhosale R, Jewell JB, Hollunder J, Koo AJ, Vuylsteke M, Michoel T, Hilson P, Goossens A, Howe GA, Browse J, Maere S
Plant Cell, 25(8):2865-2877, 13 Aug 2013
Cited by: 29 articles | PMID: 23943861
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Saccharomyces genome database provides new regulation data.
Costanzo MC, Engel SR, Wong ED, Lloyd P, Karra K, Chan ET, Weng S, Paskov KM, Roe GR, Binkley G, Hitz BC, Cherry JM
Nucleic Acids Res, 42(database issue):D717-25, 21 Nov 2013
Cited by: 42 articles | PMID: 24265222 | PMCID: PMC3965049
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Functional characterization of fission yeast transcription factors by overexpression analysis.
Vachon L, Wood J, Kwon EJ, Laderoute A, Chatfield-Reed K, Karagiannis J, Chua G
Genetics, 194(4):873-884, 20 May 2013
Cited by: 12 articles | PMID: 23695302 | PMCID: PMC3730917
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Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers.
Reimand J, Bader GD
Mol Syst Biol, 9:637, 01 Jan 2013
Cited by: 170 articles | PMID: 23340843 | PMCID: PMC3564258
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Modeling the evolution of a classic genetic switch.
Josephides C, Moses AM
BMC Syst Biol, 5:24, 05 Feb 2011
Cited by: 5 articles | PMID: 21294912 | PMCID: PMC3048525
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Inferring gene correlation networks from transcription factor binding sites.
Mahdevar G, Nowzari-Dalini A, Sadeghi M
Genes Genet Syst, 88(5):301-309, 01 Jan 2013
Cited by: 2 articles | PMID: 24694393
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Functional analysis with a barcoder yeast gene overexpression system.
Douglas AC, Smith AM, Sharifpoor S, Yan Z, Durbic T, Heisler LE, Lee AY, Ryan O, Göttert H, Surendra A, van Dyk D, Giaever G, Boone C, Nislow C, Andrews BJ
G3 (Bethesda), 2(10):1279-1289, 01 Oct 2012
Cited by: 52 articles | PMID: 23050238 | PMCID: PMC3464120
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Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison.
Titsias MK, Honkela A, Lawrence ND, Rattray M
BMC Syst Biol, 6:53, 30 May 2012
Cited by: 6 articles | PMID: 22647244 | PMCID: PMC3527261
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Inflammatory gene regulatory networks in amnion cells following cytokine stimulation: translational systems approach to modeling human parturition.
Li R, Ackerman WE, Summerfield TL, Yu L, Gulati P, Zhang J, Huang K, Romero R, Kniss DA
PLoS One, 6(6):e20560, 02 Jun 2011
Cited by: 17 articles | PMID: 21655103 | PMCID: PMC3107214
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Learning transcriptional regulation on a genome scale: a theoretical analysis based on gene expression data.
Wu M, Chan C
Brief Bioinform, 13(2):150-161, 26 May 2011
Cited by: 13 articles | PMID: 21622543 | PMCID: PMC3294238
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Distant cis-regulatory elements in human skeletal muscle differentiation.
McCord RP, Zhou VW, Yuh T, Bulyk ML
Genomics, 98(6):401-411, 23 Aug 2011
Cited by: 10 articles | PMID: 21907276 | PMCID: PMC3229301
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Information propagation within the Genetic Network of Saccharomyces cerevisiae.
Chowdhury S, Lloyd-Price J, Smolander OP, Baici WC, Hughes TR, Yli-Harja O, Chua G, Ribeiro AS
BMC Syst Biol, 4:143, 26 Oct 2010
Cited by: 7 articles | PMID: 20977725 | PMCID: PMC2975643
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Computational approaches to the integration of gene expression, ChIP-chip and sequence data in the inference of gene regulatory networks.
Cooke EJ, Savage RS, Wild DL
Semin Cell Dev Biol, 20(7):863-868, 12 Aug 2009
Cited by: 9 articles | PMID: 19682595
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PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae.
Stark C, Su TC, Breitkreutz A, Lourenco P, Dahabieh M, Breitkreutz BJ, Tyers M, Sadowski I
Database (Oxford), 2010:bap026, 28 Jan 2010
Cited by: 62 articles | PMID: 20428315 | PMCID: PMC2860897
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Reconstructing transcriptional regulatory networks through genomics data.
Sun N, Zhao H
Stat Methods Med Res, 18(6):595-617, 01 Dec 2009
Cited by: 6 articles | PMID: 20048387 | PMCID: PMC3666560
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NETWORKS, BIOLOGY AND SYSTEMS ENGINEERING: A CASE STUDY IN INFLAMMATION.
Foteinou PT, Yang E, Androulakis IP
Comput Chem Eng, 33(12):2028-2041, 01 Dec 2009
Cited by: 9 articles | PMID: 20161495 | PMCID: PMC2796781
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Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster.
Marco A, Konikoff C, Karr TL, Kumar S
Bioinformatics, 25(19):2473-2477, 24 Jul 2009
Cited by: 35 articles | PMID: 19633094 | PMCID: PMC2752616
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Investigating transcriptional regulation: from analysis of complex networks to discovery of cis-regulatory elements.
Janky R, Helden Jv, Babu MM
Methods, 48(3):277-286, 18 May 2009
Cited by: 1 article | PMID: 19450688
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1-25 of 38 results

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Search life-sciences literature (45,103,589 articles, preprints and more)

Search results

Yeast heterochromatin stably silences only weak regulatory elements by altering burst duration.

The Genetic Mechanisms Underlying the Concerted Expression of the yellow and tan Genes in Complex Patterns on the Abdomen and Wings of Drosophila guttifera.

Genetic-interaction screens uncover novel biological roles and regulators of transcription factors in fission yeast.

Dynamic motif occupancy (DynaMO) analysis identifies transcription factors and their binding sites driving dynamic biological processes.

Inference and interrogation of a coregulatory network in the context of lipid accumulation in Yarrowia lipolytica.

Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors.

Mapping yeast transcriptional networks.

Predicting gene function from uncontrolled expression variation among individual wild-type Arabidopsis plants.

Saccharomyces genome database provides new regulation data.

Functional characterization of fission yeast transcription factors by overexpression analysis.

Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers.

Modeling the evolution of a classic genetic switch.

Inferring gene correlation networks from transcription factor binding sites.

Functional analysis with a barcoder yeast gene overexpression system.

Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison.

Inflammatory gene regulatory networks in amnion cells following cytokine stimulation: translational systems approach to modeling human parturition.

Learning transcriptional regulation on a genome scale: a theoretical analysis based on gene expression data.

Distant cis-regulatory elements in human skeletal muscle differentiation.

Information propagation within the Genetic Network of Saccharomyces cerevisiae.

Computational approaches to the integration of gene expression, ChIP-chip and sequence data in the inference of gene regulatory networks.

PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae.

Reconstructing transcriptional regulatory networks through genomics data.

NETWORKS, BIOLOGY AND SYSTEMS ENGINEERING: A CASE STUDY IN INFLAMMATION.

Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster.

Investigating transcriptional regulation: from analysis of complex networks to discovery of cis-regulatory elements.

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