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Search life-sciences literature (45,103,589 articles, preprints and more)

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Unravelling the Genetic Landscape of Hemiplegic Migraine: Exploring Innovative Strategies and Emerging Approaches.
Alfayyadh MM, Maksemous N, Sutherland HG, Lea RA, Griffiths LR
Genes (Basel), 15(4):443, 31 Mar 2024
Cited by: 0 articles | PMID: 38674378 | PMCID: PMC11049430
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T proliferating cells derived autophagy signature associated with prognosis and immunotherapy resistance in a pan-cancer analysis.
Fan Z, Liu Y, Li C, Jiang Y, Wang N, Wang M, Li C, Diao Y, Qiu W, Zhu X, Wang G, Cai S, Yang T, Lv G
iScience, 27(1):108701, 08 Dec 2023
Cited by: 2 articles | PMID: 38222108 | PMCID: PMC10784705
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Classification of HER2-negative breast cancers by ERBB2 copy number alteration status reveals molecular differences associated with chromosome 17 gene aberrations.
Loh JW, Lim AH, Chan JY, Yap YS
Ther Adv Med Oncol, 15:17588359231206259, 31 Oct 2023
Cited by: 0 articles | PMID: 37920257 | PMCID: PMC10619358
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PUREE: accurate pan-cancer tumor purity estimation from gene expression data.
Revkov E, Kulshrestha T, Sung KW, Skanderup AJ
Commun Biol, 6(1):394, 11 Apr 2023
Cited by: 8 articles | PMID: 37041233 | PMCID: PMC10090153
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clevRvis: visualization techniques for clonal evolution.
Sandmann S, Inserte C, Varghese J
Gigascience, 12:giad020, 01 Dec 2022
Cited by: 4 articles | PMID: 37039116 | PMCID: PMC10087014
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ploidyfrost: Reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graphs.
Sun M, Pang E, Bai WN, Zhang DY, Lin K
Mol Ecol Resour, 23(2):499-510, 01 Nov 2022
Cited by: 5 articles | PMID: 36239149 | PMCID: PMC10092044
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Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer.
Joanito I, Wirapati P, Zhao N, Nawaz Z, Yeo G, Lee F, Eng CLP, Macalinao DC, Kahraman M, Srinivasan H, Lakshmanan V, Verbandt S, Tsantoulis P, Gunn N, Venkatesh PN, Poh ZW, Nahar R, Oh HLJ, Loo JM, [...] Tan IB
Nat Genet, 54(7):963-975, 30 Jun 2022
Cited by: 116 articles | PMID: 35773407 | PMCID: PMC9279158
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Identification of Copy Number Alterations from Next-Generation Sequencing Data.
Nabavi S, Zare F
Adv Exp Med Biol, 1361:55-74, 01 Jan 2022
Cited by: 1 article | PMID: 35230683
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The Analysis of Gene Expression Data Incorporating Tumor Purity Information.
Ahn S, Grimes T, Datta S
Front Genet, 12:642759, 23 Aug 2021
Cited by: 1 article | PMID: 34497631 | PMCID: PMC8419469
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Computational analysis of cancer genome sequencing data.
Cortés-Ciriano I, Gulhan DC, Lee JJ, Melloni GEM, Park PJ
Nat Rev Genet, 23(5):298-314, 08 Dec 2021
Cited by: 38 articles | PMID: 34880424
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HCMMCNVs: hierarchical clustering mixture model of copy number variants detection using whole exome sequencing technology.
Song C, Su SC, Huo Z, Vural S, Galvin JE, Chang LC
Bioinformatics, 37(18):3026-3028, 01 Sep 2021
Cited by: 0 articles | PMID: 33714997 | PMCID: PMC8479678
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Genomic characteristics of invasive mucinous adenocarcinoma of the lung with multiple pulmonary sites of involvement.
Kim M, Hwang J, Kim KA, Hwang S, Lee HJ, Jung JY, Lee JG, Cha YJ, Shim HS
Mod Pathol, 35(2):202-209, 21 Jul 2021
Cited by: 10 articles | PMID: 34290355 | PMCID: PMC8786658
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Tissue-specific cell-free DNA degradation quantifies circulating tumor DNA burden.
Zhu G, Guo YA, Ho D, Poon P, Poh ZW, Wong PM, Gan A, Chang MM, Kleftogiannis D, Lau YT, Tay B, Lim WJ, Chua C, Tan TJ, Koo SL, Chong DQ, Yap YS, Tan I, Ng S, Skanderup AJ
Nat Commun, 12(1):2229, 13 Apr 2021
Cited by: 31 articles | PMID: 33850132 | PMCID: PMC8044092
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Comment on 'The expression landscape of cachexia-inducing factors in human cancers' by Freire et al.
Xie L, Guo X
J Cachexia Sarcopenia Muscle, 12(2):523-524, 13 Jan 2021
Cited by: 1 article | PMID: 33442951 | PMCID: PMC8061422
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Ploidy- and Purity-Adjusted Allele-Specific DNA Analysis Using CLONETv2.
Prandi D, Demichelis F
Curr Protoc Bioinformatics, 67(1):e81, 01 Sep 2019
Cited by: 10 articles | PMID: 31524989 | PMCID: PMC6778654
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Comparison of in situ and extraction-based methods for the detection of MET amplifications in solid tumors.
Heydt C, Becher AK, Wagener-Ryczek S, Ball M, Schultheis AM, Schallenberg S, Rüsseler V, Büttner R, Merkelbach-Bruse S
Comput Struct Biotechnol J, 17:1339-1347, 11 Sep 2019
Cited by: 13 articles | PMID: 31762957 | PMCID: PMC6861603
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Gliosarcoma Is Driven by Alterations in PI3K/Akt, RAS/MAPK Pathways and Characterized by Collagen Gene Expression Signature.
Wojtas B, Gielniewski B, Wojnicki K, Maleszewska M, Mondal SS, Nauman P, Grajkowska W, Glass R, Schüller U, Herold-Mende C, Kaminska B
Cancers (Basel), 11(3):E284, 27 Feb 2019
Cited by: 14 articles | PMID: 30818875 | PMCID: PMC6468745
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MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design.
Cai W, Zhou D, Wu W, Tan WL, Wang J, Zhou C, Lou Y
BMC Genomics, 19(1):582, 03 Aug 2018
Cited by: 30 articles | PMID: 30075702 | PMCID: PMC6090856
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Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity.
Heindl A, Khan AM, Rodrigues DN, Eason K, Sadanandam A, Orbegoso C, Punta M, Sottoriva A, Lise S, Banerjee S, Yuan Y
Nat Commun, 9(1):3917, 25 Sep 2018
Cited by: 25 articles | PMID: 30254278 | PMCID: PMC6156340
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Forward and reverse mutations in stages of cancer development.
Hu T, Kumar Y, Shazia I, Duan SJ, Li Y, Chen L, Chen JF, Yin R, Kwong A, Leung GK, Mat WK, Wu Z, Long X, Chan CH, Chen S, Lee P, Ng SK, Ho TYC, Yang J, [...] Xue H
Hum Genomics, 12(1):40, 22 Aug 2018
Cited by: 7 articles | PMID: 30134973 | PMCID: PMC6104001
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ploidyNGS: visually exploring ploidy with Next Generation Sequencing data.
Augusto Corrêa Dos Santos R, Goldman GH, Riaño-Pachón DM
Bioinformatics, 33(16):2575-2576, 01 Aug 2017
Cited by: 29 articles | PMID: 28383704
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Universal informative CpG sites for inferring tumor purity from DNA methylation microarray data.
Dou H, Fang Y, Zheng X
J Bioinform Comput Biol, 16(3):1750030, 28 Dec 2017
Cited by: 0 articles | PMID: 29347875
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Accounting for tumor purity improves cancer subtype classification from DNA methylation data.
Zhang W, Feng H, Wu H, Zheng X
Bioinformatics, 33(17):2651-2657, 01 Sep 2017
Cited by: 15 articles | PMID: 28472248 | PMCID: PMC6410888
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Quantification of Multiple Tumor Clones Using Gene Array and Sequencing Data.
Cheng Y, Dai JY, Paulson TG, Wang X, Li X, Reid BJ, Kooperberg C
Ann Appl Stat, 11(2):967-991, 01 Jun 2017
Cited by: 3 articles | PMID: 29250210 | PMCID: PMC5728449
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Cell subpopulation deconvolution reveals breast cancer heterogeneity based on DNA methylation signature.
Wen Y, Wei Y, Zhang S, Li S, Liu H, Wang F, Zhao Y, Zhang D, Zhang Y
Brief Bioinform, 18(3):426-440, 01 May 2017
Cited by: 14 articles | PMID: 27016391
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1-25 of 31 results

1 2

Search life-sciences literature (45,103,589 articles, preprints and more)

Search results

Unravelling the Genetic Landscape of Hemiplegic Migraine: Exploring Innovative Strategies and Emerging Approaches.

T proliferating cells derived autophagy signature associated with prognosis and immunotherapy resistance in a pan-cancer analysis.

Classification of HER2-negative breast cancers by ERBB2 copy number alteration status reveals molecular differences associated with chromosome 17 gene aberrations.

PUREE: accurate pan-cancer tumor purity estimation from gene expression data.

clevRvis: visualization techniques for clonal evolution.

ploidyfrost: Reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graphs.

Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer.

Identification of Copy Number Alterations from Next-Generation Sequencing Data.

The Analysis of Gene Expression Data Incorporating Tumor Purity Information.

Computational analysis of cancer genome sequencing data.

HCMMCNVs: hierarchical clustering mixture model of copy number variants detection using whole exome sequencing technology.

Genomic characteristics of invasive mucinous adenocarcinoma of the lung with multiple pulmonary sites of involvement.

Tissue-specific cell-free DNA degradation quantifies circulating tumor DNA burden.

Comment on 'The expression landscape of cachexia-inducing factors in human cancers' by Freire et al.

Ploidy- and Purity-Adjusted Allele-Specific DNA Analysis Using CLONETv2.

Comparison of in situ and extraction-based methods for the detection of MET amplifications in solid tumors.

Gliosarcoma Is Driven by Alterations in PI3K/Akt, RAS/MAPK Pathways and Characterized by Collagen Gene Expression Signature.

MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design.

Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity.

Forward and reverse mutations in stages of cancer development.

ploidyNGS: visually exploring ploidy with Next Generation Sequencing data.

Universal informative CpG sites for inferring tumor purity from DNA methylation microarray data.

Accounting for tumor purity improves cancer subtype classification from DNA methylation data.

Quantification of Multiple Tumor Clones Using Gene Array and Sequencing Data.

Cell subpopulation deconvolution reveals breast cancer heterogeneity based on DNA methylation signature.

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