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Search life-sciences literature (45,104,206 articles, preprints and more)

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Macromolecular Crowding and DNA: Bridging the Gap between In Vitro and In Vivo.
Collette D, Dunlap D, Finzi L
Int J Mol Sci, 24(24):17502, 15 Dec 2023
Cited by: 1 article | PMID: 38139331 | PMCID: PMC10744201
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Local and Large-Scale Conformational Dynamics in Unfolded Proteins and IDPs. I. Effect of Solvent Viscosity and Macromolecular Crowding.
Stecher K, Krieger F, Schleeger M, Kiefhaber T
J Phys Chem B, 127(38):8095-8105, 18 Sep 2023
Cited by: 0 articles | PMID: 37722681 | PMCID: PMC10544011
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Understanding DNA interactions in crowded environments with a coarse-grained model.
Hong F, Schreck JS, Šulc P
Nucleic Acids Res, 48(19):10726-10738, 01 Nov 2020
Cited by: 10 articles | PMID: 33045749 | PMCID: PMC7641764
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Structural Basis of Enhanced Facilitated Diffusion of DNA-Binding Protein in Crowded Cellular Milieu.
Dey P, Bhattacherjee A
Biophys J, 118(2):505-517, 29 Nov 2019
Cited by: 7 articles | PMID: 31862109 | PMCID: PMC6976804
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Ergodic properties of heterogeneous diffusion processes in a potential well.
Wang X, Deng W, Chen Y
J Chem Phys, 150(16):164121, 01 Apr 2019
Cited by: 0 articles | PMID: 31042889
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Comparative study of the crowding-induced collapse effect in hard-sphere, flexible polymer and rod-like polymer systems.
Chen A, Zhao N
Phys Chem Chem Phys, 21(23):12335-12345, 29 May 2019
Cited by: 2 articles | PMID: 31140498
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Crowding-Activity Coupling Effect on Conformational Change of a Semi-Flexible Polymer.
Cao X, Zhang B, Zhao N
Polymers (Basel), 11(6):E1021, 10 Jun 2019
Cited by: 3 articles | PMID: 31185626 | PMCID: PMC6631676
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Unusual crowding-induced chain looping kinetics in hard-sphere fluids: a contrastive study with polymer solutions.
Bian Y, Yan R, Li P, Zhao N
Soft Matter, 15(24):4976-4988, 01 Jun 2019
Cited by: 0 articles | PMID: 31173026
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DNA size in confined environments.
Zoli M
Phys Chem Chem Phys, 21(23):12566-12575, 31 May 2019
Cited by: 3 articles | PMID: 31149680
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Disparity in anomalous diffusion of proteins searching for their target DNA sites in a crowded medium is controlled by the size, shape and mobility of macromolecular crowders.
Dey P, Bhattacherjee A
Soft Matter, 15(9):1960-1969, 01 Feb 2019
Cited by: 6 articles | PMID: 30539954
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The role of solvent quality and chain stiffness on the end-to-end contact kinetics of semiflexible polymers.
Wu J, Huang Y, Yin H, Chen T
J Chem Phys, 149(23):234903, 01 Dec 2018
Cited by: 1 article | PMID: 30579311
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Fibrous polymer nanomaterials for biomedical applications and their transport by fluids: an overview.
Pawłowska S, Kowalewski TA, Pierini F
Soft Matter, 14(42):8421-8444, 01 Oct 2018
Cited by: 6 articles | PMID: 30339174
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Understanding chain looping kinetics in polymer solutions: crowding effects of microviscosity and collapse.
Bian Y, Cao X, Li P, Zhao N
Soft Matter, 14(39):8060-8072, 01 Oct 2018
Cited by: 1 article | PMID: 30255917
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Crowding Induces Entropically-Driven Changes to DNA Dynamics That Depend on Crowder Structure and Ionic Conditions.
Mardoum WM, Gorczyca SM, Regan KE, Wu TC, Robertson-Anderson RM
Front Phys, 6:53, 05 Jun 2018
Cited by: 6 articles | PMID: 31667164 | PMCID: PMC6820857
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Elasticity-based polymer sorting in active fluids: a Brownian dynamics study.
Shin J, Cherstvy AG, Kim WK, Zaburdaev V
Phys Chem Chem Phys, 19(28):18338-18347, 01 Jul 2017
Cited by: 6 articles | PMID: 28678228
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Soft Interactions with Model Crowders and Non-canonical Interactions with Cellular Proteins Stabilize RNA Folding.
Daher M, Widom JR, Tay W, Walter NG
J Mol Biol, 430(4):509-523, 08 Nov 2017
Cited by: 16 articles | PMID: 29128594 | PMCID: PMC5805602
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Charging and Release Mechanisms of Flexible Macromolecules in Droplets.
Oh MI, Consta S
J Am Soc Mass Spectrom, 28(11):2262-2279, 11 Aug 2017
Cited by: 1 article | PMID: 28801879
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DNA melting in the presence of molecular crowders.
Singh A, Singh N
Phys Chem Chem Phys, 19(29):19452-19460, 01 Jul 2017
Cited by: 8 articles | PMID: 28718468
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Making microenvironments: A look into incorporating macromolecular crowding into in vitro experiments, to generate biomimetic microenvironments which are capable of directing cell function for tissue engineering applications.
Benny P, Raghunath M
J Tissue Eng, 8:2041731417730467, 01 Jan 2017
Cited by: 18 articles | PMID: 29051808 | PMCID: PMC5638150
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Tracer diffusion in a sea of polymers with binding zones: mobile vs. frozen traps.
Samanta N, Chakrabarti R
Soft Matter, 12(41):8554-8563, 01 Oct 2016
Cited by: 10 articles | PMID: 27714359
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How nonspecifically DNA-binding proteins search for the target in crowded environments.
Ma Y, Chen Y, Yu W, Luo K
J Chem Phys, 144(12):125102, 01 Mar 2016
Cited by: 5 articles | PMID: 27036479
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Polymer segregation under confinement: Influences of macromolecular crowding and the interaction between the polymer and crowders.
Chen Y, Yu W, Wang J, Luo K
J Chem Phys, 143(13):134904, 01 Oct 2015
Cited by: 4 articles | PMID: 26450331
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Ion specificity of macromolecules in crowded environments.
Song W, Liu L, Liu G
Soft Matter, 11(29):5940-5946, 01 Aug 2015
Cited by: 2 articles | PMID: 26119620
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Unusual domain movement in a multidomain protein in the presence of macromolecular crowders.
Biswas S, Chowdhury PK
Phys Chem Chem Phys, 17(30):19820-19833, 09 Jul 2015
Cited by: 3 articles | PMID: 26156390
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Protein abundance may regulate sensitivity to external cues in polarized cells.
Sturrock M, Dawes AT
J R Soc Interface, 12(106):20150150, 01 May 2015
Cited by: 0 articles | PMID: 25878132 | PMCID: PMC4424693
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